BioC 3.3: CHECK report for qvalue on linux2.bioconductor.org
This page was generated on 2015-10-27 12:11:23 -0400 (Tue, 27 Oct 2015).
qvalue 2.3.0 John D. Storey , Andrew J. Bass
Snapshot Date: 2015-10-26 20:20:04 -0400 (Mon, 26 Oct 2015) | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/qvalue | Last Changed Rev: 109592 / Revision: 109948 | Last Changed Date: 2015-10-13 15:59:53 -0400 (Tue, 13 Oct 2015) |
| linux2.bioconductor.org | Linux (Ubuntu 14.04.2 LTS) / x86_64 | OK | OK | [ OK ] | |  |
windows2.bioconductor.org | Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK | OK |  |
Summary
Package: qvalue |
Version: 2.3.0 |
Command: /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD check --no-vignettes --timings qvalue_2.3.0.tar.gz |
StartedAt: 2015-10-27 07:07:32 -0400 (Tue, 27 Oct 2015) |
EndedAt: 2015-10-27 07:07:58 -0400 (Tue, 27 Oct 2015) |
EllapsedTime: 25.5 seconds |
RetCode: 0 |
Status: OK |
CheckDir: qvalue.Rcheck |
Warnings: 0 |
Command output
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### Running command:
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### /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD check --no-vignettes --timings qvalue_2.3.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.3-bioc/meat/qvalue.Rcheck’
* using R Under development (unstable) (2015-09-09 r69333)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘qvalue/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘qvalue’ version ‘2.3.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘qvalue’ can be installed ... [1s/1s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [6s/6s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
qvalue.Rcheck/00install.out:
* installing *source* package ‘qvalue’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (qvalue)
qvalue.Rcheck/qvalue-Ex.timings:
name | user | system | elapsed
|
empPvals | 0.232 | 0.008 | 0.240 |
|
hedenfalk | 0.926 | 0.016 | 0.942 |
|
hist.qvalue | 0.328 | 0.008 | 0.336 |
|
lfdr | 0.565 | 0.004 | 0.569 |
|
pi0est | 1.240 | 0.012 | 1.254 |
|
plot.qvalue | 0.660 | 0.000 | 0.661 |
|
qvalue | 1.216 | 0.000 | 1.218 |
|
summary.qvalue | 0.07 | 0.00 | 0.07 |
|
write.qvalue | 0.097 | 0.000 | 0.097 |
|