BioC 3.3: CHECK report for piano on windows2.bioconductor.org
This page was generated on 2015-10-27 12:15:16 -0400 (Tue, 27 Oct 2015).
piano 1.11.0
Leif Varemo
| Snapshot Date: 2015-10-26 20:20:04 -0400 (Mon, 26 Oct 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/piano | | Last Changed Rev: 109592 / Revision: 109948 | | Last Changed Date: 2015-10-13 15:59:53 -0400 (Tue, 13 Oct 2015) |
| linux2.bioconductor.org | Linux (Ubuntu 14.04.2 LTS) / x86_64 | OK | OK | WARNINGS | |  |
| windows2.bioconductor.org | Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | [ WARNINGS ] | OK | |
Summary
| Package: piano
|
| Version: 1.11.0
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| Command: rm -rf piano.buildbin-libdir piano.Rcheck && mkdir piano.buildbin-libdir piano.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=piano.buildbin-libdir piano_1.11.0.tar.gz >piano.Rcheck\00install.out 2>&1 && cp piano.Rcheck\00install.out piano-install.out && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=piano.buildbin-libdir --install="check:piano-install.out" --force-multiarch --no-vignettes --timings piano_1.11.0.tar.gz
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| StartedAt: 2015-10-27 04:58:41 -0400 (Tue, 27 Oct 2015)
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| EndedAt: 2015-10-27 05:00:24 -0400 (Tue, 27 Oct 2015)
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| EllapsedTime: 103.0 seconds
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| RetCode: 0
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| Status: WARNINGS
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| CheckDir: piano.Rcheck
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| Warnings: 1
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Command output
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###
### Running command:
###
### rm -rf piano.buildbin-libdir piano.Rcheck && mkdir piano.buildbin-libdir piano.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=piano.buildbin-libdir piano_1.11.0.tar.gz >piano.Rcheck\00install.out 2>&1 && cp piano.Rcheck\00install.out piano-install.out && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=piano.buildbin-libdir --install="check:piano-install.out" --force-multiarch --no-vignettes --timings piano_1.11.0.tar.gz
###
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* using log directory 'c:/biocbld/bbs-3.3-bioc/meat/piano.Rcheck'
* using R Under development (unstable) (2015-09-22 r69418)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'piano/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'piano' version '1.11.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'piano' can be installed ... WARNING
Found the following significant warnings:
Warning: replacing previous import by 'igraph::union' when loading 'piano'
Warning: replacing previous import by 'igraph::normalize' when loading 'piano'
See 'c:/biocbld/bbs-3.3-bioc/meat/piano.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [23s] OK
** running examples for arch 'x64' ... [26s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING
See
'c:/biocbld/bbs-3.3-bioc/meat/piano.Rcheck/00check.log'
for details.
piano.Rcheck/00install.out:
install for i386
* installing *source* package 'piano' ...
** R
** data
** inst
** preparing package for lazy loading
Warning: replacing previous import by 'igraph::union' when loading 'piano'
Warning: replacing previous import by 'igraph::normalize' when loading 'piano'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: replacing previous import by 'igraph::union' when loading 'piano'
Warning: replacing previous import by 'igraph::normalize' when loading 'piano'
install for x64
* installing *source* package 'piano' ...
** testing if installed package can be loaded
Warning: replacing previous import by 'igraph::union' when loading 'piano'
Warning: replacing previous import by 'igraph::normalize' when loading 'piano'
* MD5 sums
packaged installation of 'piano' as piano_1.11.0.zip
* DONE (piano)
piano.Rcheck/examples_i386/piano-Ex.timings:
| name | user | system | elapsed
|
| GSAheatmap | 3.18 | 0.00 | 3.17 |
|
| GSAsummaryTable | 2.92 | 0.00 | 2.92 |
|
| consensusHeatmap | 0.17 | 0.07 | 0.27 |
|
| consensusScores | 0.06 | 0.02 | 0.07 |
|
| diffExp | 2.36 | 0.25 | 3.25 |
|
| extractFactors | 0.25 | 0.02 | 0.26 |
|
| geneSetSummary | 2.97 | 0.00 | 2.97 |
|
| loadGSC | 0.01 | 0.00 | 0.02 |
|
| loadMAdata | 0.25 | 0.00 | 0.25 |
|
| networkPlot | 3.89 | 0.00 | 3.89 |
|
| polarPlot | 0.63 | 0.06 | 0.69 |
|
| runGSA | 2.9 | 0.0 | 2.9 |
|
| runGSAhyper | 0.18 | 0.00 | 0.18 |
|
| runQC | 0.76 | 0.11 | 0.89 |
|
| writeFilesForKiwi | 0.16 | 0.00 | 0.15 |
|
piano.Rcheck/examples_x64/piano-Ex.timings:
| name | user | system | elapsed
|
| GSAheatmap | 3.44 | 0.02 | 3.45 |
|
| GSAsummaryTable | 3.59 | 0.00 | 3.60 |
|
| consensusHeatmap | 0.27 | 0.00 | 0.26 |
|
| consensusScores | 0.09 | 0.00 | 0.10 |
|
| diffExp | 2.80 | 0.23 | 3.03 |
|
| extractFactors | 0.25 | 0.00 | 0.25 |
|
| geneSetSummary | 3.7 | 0.0 | 3.7 |
|
| loadGSC | 0.02 | 0.00 | 0.02 |
|
| loadMAdata | 0.25 | 0.00 | 0.25 |
|
| networkPlot | 4.34 | 0.04 | 4.37 |
|
| polarPlot | 0.49 | 0.09 | 0.58 |
|
| runGSA | 3.68 | 0.00 | 3.69 |
|
| runGSAhyper | 0.19 | 0.00 | 0.19 |
|
| runQC | 0.89 | 0.11 | 1.00 |
|
| writeFilesForKiwi | 0.14 | 0.00 | 0.14 |
|