BioC 3.3: CHECK report for mogsa on windows2.bioconductor.org
This page was generated on 2015-10-27 12:16:02 -0400 (Tue, 27 Oct 2015).
mogsa 1.3.0 Chen Meng
Snapshot Date: 2015-10-26 20:20:04 -0400 (Mon, 26 Oct 2015) | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/mogsa | Last Changed Rev: 109592 / Revision: 109948 | Last Changed Date: 2015-10-13 15:59:53 -0400 (Tue, 13 Oct 2015) |
| linux2.bioconductor.org | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | OK | |  |
windows2.bioconductor.org | Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | [ OK ] | OK |  |
Summary
Package: mogsa
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Version: 1.3.0
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Command: rm -rf mogsa.buildbin-libdir mogsa.Rcheck && mkdir mogsa.buildbin-libdir mogsa.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=mogsa.buildbin-libdir mogsa_1.3.0.tar.gz >mogsa.Rcheck\00install.out 2>&1 && cp mogsa.Rcheck\00install.out mogsa-install.out && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=mogsa.buildbin-libdir --install="check:mogsa-install.out" --force-multiarch --no-vignettes --timings mogsa_1.3.0.tar.gz
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StartedAt: 2015-10-27 04:18:01 -0400 (Tue, 27 Oct 2015)
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EndedAt: 2015-10-27 04:20:57 -0400 (Tue, 27 Oct 2015)
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EllapsedTime: 176.5 seconds
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RetCode: 0
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Status: OK
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CheckDir: mogsa.Rcheck
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Warnings: 0
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Command output
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### Running command:
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### rm -rf mogsa.buildbin-libdir mogsa.Rcheck && mkdir mogsa.buildbin-libdir mogsa.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=mogsa.buildbin-libdir mogsa_1.3.0.tar.gz >mogsa.Rcheck\00install.out 2>&1 && cp mogsa.Rcheck\00install.out mogsa-install.out && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=mogsa.buildbin-libdir --install="check:mogsa-install.out" --force-multiarch --no-vignettes --timings mogsa_1.3.0.tar.gz
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* using log directory 'c:/biocbld/bbs-3.3-bioc/meat/mogsa.Rcheck'
* using R Under development (unstable) (2015-09-22 r69418)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'mogsa/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'mogsa' version '1.3.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'mogsa' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [39s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
mbpca 4.39 0.02 9.88
moGap 1.76 0.03 5.92
** running examples for arch 'x64' ... [23s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
mogsa.Rcheck/00install.out:
install for i386
* installing *source* package 'mogsa' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'mogsa' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'mogsa' as mogsa_1.3.0.zip
* DONE (mogsa)
mogsa.Rcheck/examples_i386/mogsa-Ex.timings:
name | user | system | elapsed
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GIS | 1.23 | 0.05 | 1.89 |
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annotate.gs | 0.44 | 0.00 | 0.65 |
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bootMbpca | 0 | 0 | 0 |
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box.gs.feature | 0.52 | 0.00 | 0.90 |
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combine-methods | 0.69 | 0.00 | 1.23 |
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decompose.gs.group | 0.36 | 0.00 | 0.50 |
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decompose.gs.ind | 0.37 | 0.00 | 0.64 |
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distMoa | 0.46 | 0.01 | 0.67 |
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getmgsa | 0.32 | 0.02 | 0.58 |
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matpower | 0 | 0 | 0 |
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mbpca | 4.39 | 0.02 | 9.88 |
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mgsa-class | 0.32 | 0.03 | 0.95 |
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moGap | 1.76 | 0.03 | 5.92 |
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moa-class | 0.14 | 0.00 | 0.14 |
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moa | 0.21 | 0.00 | 0.21 |
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moa.sup-class | 0.18 | 0.00 | 0.18 |
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moaCoef | 0.54 | 0.00 | 0.53 |
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moaScore | 0.54 | 0.00 | 0.55 |
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mogsa-package | 0.55 | 0.00 | 0.55 |
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mogsa | 0.58 | 0.00 | 0.58 |
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pairwise.rv | 0.03 | 0.00 | 0.03 |
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plotGS | 0.34 | 0.01 | 0.36 |
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prepGraphite | 0.16 | 0.00 | 0.15 |
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prepMsigDB | 0.01 | 0.00 | 0.02 |
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prepSupMoa | 1.36 | 0.05 | 1.41 |
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softK | 0 | 0 | 0 |
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sup.moa | 0.72 | 0.00 | 0.72 |
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wsvd | 0 | 0 | 0 |
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mogsa.Rcheck/examples_x64/mogsa-Ex.timings:
name | user | system | elapsed
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GIS | 1.23 | 0.01 | 1.25 |
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annotate.gs | 0.42 | 0.04 | 0.46 |
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bootMbpca | 0 | 0 | 0 |
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box.gs.feature | 0.55 | 0.00 | 0.54 |
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combine-methods | 0.77 | 0.00 | 0.76 |
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decompose.gs.group | 0.45 | 0.00 | 0.47 |
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decompose.gs.ind | 0.22 | 0.00 | 0.22 |
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distMoa | 0.60 | 0.02 | 0.61 |
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getmgsa | 0.18 | 0.01 | 0.20 |
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matpower | 0 | 0 | 0 |
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mbpca | 4.21 | 0.03 | 4.23 |
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mgsa-class | 0.76 | 0.00 | 0.77 |
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moGap | 1.91 | 0.02 | 1.92 |
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moa-class | 0.15 | 0.00 | 0.16 |
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moa | 0.24 | 0.00 | 0.23 |
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moa.sup-class | 0.37 | 0.00 | 0.38 |
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moaCoef | 0.43 | 0.03 | 0.45 |
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moaScore | 0.68 | 0.00 | 0.69 |
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mogsa-package | 0.39 | 0.00 | 0.39 |
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mogsa | 0.64 | 0.00 | 0.64 |
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pairwise.rv | 0.04 | 0.00 | 0.03 |
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plotGS | 0.46 | 0.00 | 0.47 |
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prepGraphite | 0.13 | 0.02 | 0.14 |
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prepMsigDB | 0 | 0 | 0 |
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prepSupMoa | 1.54 | 0.07 | 1.63 |
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softK | 0 | 0 | 0 |
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sup.moa | 0.76 | 0.04 | 0.79 |
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wsvd | 0 | 0 | 0 |
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