BioC 3.3: CHECK report for mogsa on windows2.bioconductor.org

Package: mogsa

Version: 1.3.0

Command: rm -rf mogsa.buildbin-libdir mogsa.Rcheck && mkdir mogsa.buildbin-libdir mogsa.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=mogsa.buildbin-libdir mogsa_1.3.0.tar.gz >mogsa.Rcheck\00install.out 2>&1 && cp mogsa.Rcheck\00install.out mogsa-install.out && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=mogsa.buildbin-libdir --install="check:mogsa-install.out" --force-multiarch --no-vignettes --timings mogsa_1.3.0.tar.gz

StartedAt: 2015-10-27 04:18:01 -0400 (Tue, 27 Oct 2015)

EndedAt: 2015-10-27 04:20:57 -0400 (Tue, 27 Oct 2015)

EllapsedTime: 176.5 seconds

RetCode: 0

Status:  OK

CheckDir: mogsa.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf mogsa.buildbin-libdir mogsa.Rcheck && mkdir mogsa.buildbin-libdir mogsa.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=mogsa.buildbin-libdir mogsa_1.3.0.tar.gz >mogsa.Rcheck\00install.out 2>&1 && cp mogsa.Rcheck\00install.out mogsa-install.out  && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=mogsa.buildbin-libdir --install="check:mogsa-install.out" --force-multiarch --no-vignettes --timings mogsa_1.3.0.tar.gz
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* using log directory 'c:/biocbld/bbs-3.3-bioc/meat/mogsa.Rcheck'
* using R Under development (unstable) (2015-09-22 r69418)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'mogsa/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'mogsa' version '1.3.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'mogsa' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [39s] OK
Examples with CPU or elapsed time > 5s
      user system elapsed
mbpca 4.39   0.02    9.88
moGap 1.76   0.03    5.92
** running examples for arch 'x64' ... [23s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

install for i386

* installing *source* package 'mogsa' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'mogsa' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'mogsa' as mogsa_1.3.0.zip
* DONE (mogsa)

name	user	system	elapsed
GIS	1.23	0.05	1.89
annotate.gs	0.44	0.00	0.65
bootMbpca	0	0	0
box.gs.feature	0.52	0.00	0.90
combine-methods	0.69	0.00	1.23
decompose.gs.group	0.36	0.00	0.50
decompose.gs.ind	0.37	0.00	0.64
distMoa	0.46	0.01	0.67
getmgsa	0.32	0.02	0.58
matpower	0	0	0
mbpca	4.39	0.02	9.88
mgsa-class	0.32	0.03	0.95
moGap	1.76	0.03	5.92
moa-class	0.14	0.00	0.14
moa	0.21	0.00	0.21
moa.sup-class	0.18	0.00	0.18
moaCoef	0.54	0.00	0.53
moaScore	0.54	0.00	0.55
mogsa-package	0.55	0.00	0.55
mogsa	0.58	0.00	0.58
pairwise.rv	0.03	0.00	0.03
plotGS	0.34	0.01	0.36
prepGraphite	0.16	0.00	0.15
prepMsigDB	0.01	0.00	0.02
prepSupMoa	1.36	0.05	1.41
softK	0	0	0
sup.moa	0.72	0.00	0.72
wsvd	0	0	0

name	user	system	elapsed
GIS	1.23	0.01	1.25
annotate.gs	0.42	0.04	0.46
bootMbpca	0	0	0
box.gs.feature	0.55	0.00	0.54
combine-methods	0.77	0.00	0.76
decompose.gs.group	0.45	0.00	0.47
decompose.gs.ind	0.22	0.00	0.22
distMoa	0.60	0.02	0.61
getmgsa	0.18	0.01	0.20
matpower	0	0	0
mbpca	4.21	0.03	4.23
mgsa-class	0.76	0.00	0.77
moGap	1.91	0.02	1.92
moa-class	0.15	0.00	0.16
moa	0.24	0.00	0.23
moa.sup-class	0.37	0.00	0.38
moaCoef	0.43	0.03	0.45
moaScore	0.68	0.00	0.69
mogsa-package	0.39	0.00	0.39
mogsa	0.64	0.00	0.64
pairwise.rv	0.04	0.00	0.03
plotGS	0.46	0.00	0.47
prepGraphite	0.13	0.02	0.14
prepMsigDB	0	0	0
prepSupMoa	1.54	0.07	1.63
softK	0	0	0
sup.moa	0.76	0.04	0.79
wsvd	0	0	0