BioC 3.3: CHECK report for flowFit on windows2.bioconductor.org
This page was generated on 2015-10-27 12:15:17 -0400 (Tue, 27 Oct 2015).
flowFit 1.9.0
Davide Rambaldi
| Snapshot Date: 2015-10-26 20:20:04 -0400 (Mon, 26 Oct 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/flowFit | | Last Changed Rev: 109592 / Revision: 109948 | | Last Changed Date: 2015-10-13 15:59:53 -0400 (Tue, 13 Oct 2015) |
| linux2.bioconductor.org | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | OK | |  |
| windows2.bioconductor.org | Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | [ OK ] | OK | |
Summary
| Package: flowFit
|
| Version: 1.9.0
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| Command: rm -rf flowFit.buildbin-libdir flowFit.Rcheck && mkdir flowFit.buildbin-libdir flowFit.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=flowFit.buildbin-libdir flowFit_1.9.0.tar.gz >flowFit.Rcheck\00install.out 2>&1 && cp flowFit.Rcheck\00install.out flowFit-install.out && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=flowFit.buildbin-libdir --install="check:flowFit-install.out" --force-multiarch --no-vignettes --timings flowFit_1.9.0.tar.gz
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| StartedAt: 2015-10-27 02:25:03 -0400 (Tue, 27 Oct 2015)
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| EndedAt: 2015-10-27 02:26:52 -0400 (Tue, 27 Oct 2015)
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| EllapsedTime: 109.0 seconds
|
| RetCode: 0
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| Status: OK
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| CheckDir: flowFit.Rcheck
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| Warnings: 0
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Command output
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###
### Running command:
###
### rm -rf flowFit.buildbin-libdir flowFit.Rcheck && mkdir flowFit.buildbin-libdir flowFit.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=flowFit.buildbin-libdir flowFit_1.9.0.tar.gz >flowFit.Rcheck\00install.out 2>&1 && cp flowFit.Rcheck\00install.out flowFit-install.out && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=flowFit.buildbin-libdir --install="check:flowFit-install.out" --force-multiarch --no-vignettes --timings flowFit_1.9.0.tar.gz
###
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* using log directory 'c:/biocbld/bbs-3.3-bioc/meat/flowFit.Rcheck'
* using R Under development (unstable) (2015-09-22 r69418)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'flowFit/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'flowFit' version '1.9.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'flowFit' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
plot,parentFittingData-ANY: warning in axis(1, .ticks$all, label =
FALSE): partial argument match of 'label' to 'labels'
plot,proliferationFittingData-ANY: warning in axis(1, .ticks$all, label
= FALSE): partial argument match of 'label' to 'labels'
plot,parentFittingData-ANY: no visible binding for global variable
'black'
plot,proliferationFittingData-ANY: no visible binding for global
variable 'black'
Undefined global functions or variables:
black
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [23s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
flowFit-package 9.86 0.04 10.03
proliferationFitting 9.41 0.06 9.47
** running examples for arch 'x64' ... [23s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
flowFit-package 10.01 0.03 10.05
proliferationFitting 9.25 0.04 9.29
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'c:/biocbld/bbs-3.3-bioc/meat/flowFit.Rcheck/00check.log'
for details.
flowFit.Rcheck/00install.out:
install for i386
* installing *source* package 'flowFit' ...
** R
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'flowFit' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'flowFit' as flowFit_1.9.0.zip
* DONE (flowFit)
flowFit.Rcheck/examples_i386/flowFit-Ex.timings:
| name | user | system | elapsed
|
| flowFit-package | 9.86 | 0.04 | 10.03 |
|
| generationsDistance | 0 | 0 | 0 |
|
| getGenerations | 0.66 | 0.00 | 0.66 |
|
| logTicks | 0.03 | 0.00 | 0.03 |
|
| parentFitting | 0.42 | 0.01 | 0.44 |
|
| parentFittingData-class | 0.06 | 0.02 | 0.08 |
|
| proliferationFitting | 9.41 | 0.06 | 9.47 |
|
| proliferationFittingData-class | 0.52 | 0.00 | 0.52 |
|
| proliferationGrid | 0.02 | 0.00 | 0.01 |
|
| proliferationIndex | 0.45 | 0.00 | 0.46 |
|
flowFit.Rcheck/examples_x64/flowFit-Ex.timings:
| name | user | system | elapsed
|
| flowFit-package | 10.01 | 0.03 | 10.05 |
|
| generationsDistance | 0 | 0 | 0 |
|
| getGenerations | 0.52 | 0.05 | 0.56 |
|
| logTicks | 0.03 | 0.00 | 0.04 |
|
| parentFitting | 0.55 | 0.00 | 0.54 |
|
| parentFittingData-class | 0.06 | 0.00 | 0.07 |
|
| proliferationFitting | 9.25 | 0.04 | 9.29 |
|
| proliferationFittingData-class | 0.53 | 0.00 | 0.53 |
|
| proliferationGrid | 0 | 0 | 0 |
|
| proliferationIndex | 0.47 | 0.00 | 0.47 |
|