BioC 3.3: CHECK report for coGPS on windows2.bioconductor.org
This page was generated on 2015-10-27 12:14:59 -0400 (Tue, 27 Oct 2015).
coGPS 1.15.0 Yingying Wei
Snapshot Date: 2015-10-26 20:20:04 -0400 (Mon, 26 Oct 2015) | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/coGPS | Last Changed Rev: 109592 / Revision: 109948 | Last Changed Date: 2015-10-13 15:59:53 -0400 (Tue, 13 Oct 2015) |
| linux2.bioconductor.org | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | OK | |  |
windows2.bioconductor.org | Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | [ OK ] | OK |  |
Summary
Package: coGPS
|
Version: 1.15.0
|
Command: rm -rf coGPS.buildbin-libdir coGPS.Rcheck && mkdir coGPS.buildbin-libdir coGPS.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=coGPS.buildbin-libdir coGPS_1.15.0.tar.gz >coGPS.Rcheck\00install.out 2>&1 && cp coGPS.Rcheck\00install.out coGPS-install.out && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=coGPS.buildbin-libdir --install="check:coGPS-install.out" --force-multiarch --no-vignettes --timings coGPS_1.15.0.tar.gz
|
StartedAt: 2015-10-27 01:34:42 -0400 (Tue, 27 Oct 2015)
|
EndedAt: 2015-10-27 01:35:12 -0400 (Tue, 27 Oct 2015)
|
EllapsedTime: 30.4 seconds
|
RetCode: 0
|
Status: OK
|
CheckDir: coGPS.Rcheck
|
Warnings: 0
|
Command output
##############################################################################
##############################################################################
###
### Running command:
###
### rm -rf coGPS.buildbin-libdir coGPS.Rcheck && mkdir coGPS.buildbin-libdir coGPS.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=coGPS.buildbin-libdir coGPS_1.15.0.tar.gz >coGPS.Rcheck\00install.out 2>&1 && cp coGPS.Rcheck\00install.out coGPS-install.out && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=coGPS.buildbin-libdir --install="check:coGPS-install.out" --force-multiarch --no-vignettes --timings coGPS_1.15.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'c:/biocbld/bbs-3.3-bioc/meat/coGPS.Rcheck'
* using R Under development (unstable) (2015-09-22 r69418)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'coGPS/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'coGPS' version '1.15.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'coGPS' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [6s] OK
** running examples for arch 'x64' ... [7s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'c:/biocbld/bbs-3.3-bioc/meat/coGPS.Rcheck/00check.log'
for details.
coGPS.Rcheck/00install.out:
install for i386
* installing *source* package 'coGPS' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'coGPS' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'coGPS' as coGPS_1.15.0.zip
* DONE (coGPS)
coGPS.Rcheck/examples_i386/coGPS-Ex.timings:
name | user | system | elapsed
|
PCOPA | 1.28 | 0.02 | 1.29 |
|
PatientSpecificGeneList | 1.20 | 0.00 | 1.21 |
|
PlotTopPCOPA | 1.17 | 0.00 | 1.17 |
|
permCOPA | 2.08 | 0.01 | 2.09 |
|
coGPS.Rcheck/examples_x64/coGPS-Ex.timings:
name | user | system | elapsed
|
PCOPA | 1.43 | 0.05 | 1.48 |
|
PatientSpecificGeneList | 1.46 | 0.01 | 1.47 |
|
PlotTopPCOPA | 1.36 | 0.03 | 1.39 |
|
permCOPA | 2.45 | 0.02 | 2.47 |
|