BioC 3.3: CHECK report for acde on windows2.bioconductor.org
This page was generated on 2015-10-27 12:16:07 -0400 (Tue, 27 Oct 2015).
acde 1.1.0
Juan Pablo Acosta
| Snapshot Date: 2015-10-26 20:20:04 -0400 (Mon, 26 Oct 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/acde | | Last Changed Rev: 109592 / Revision: 109948 | | Last Changed Date: 2015-10-13 15:59:53 -0400 (Tue, 13 Oct 2015) |
| linux2.bioconductor.org | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | OK | |  |
| windows2.bioconductor.org | Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | [ OK ] | OK | |
Summary
| Package: acde
|
| Version: 1.1.0
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| Command: rm -rf acde.buildbin-libdir acde.Rcheck && mkdir acde.buildbin-libdir acde.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=acde.buildbin-libdir acde_1.1.0.tar.gz >acde.Rcheck\00install.out 2>&1 && cp acde.Rcheck\00install.out acde-install.out && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=acde.buildbin-libdir --install="check:acde-install.out" --force-multiarch --no-vignettes --timings acde_1.1.0.tar.gz
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| StartedAt: 2015-10-27 00:25:40 -0400 (Tue, 27 Oct 2015)
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| EndedAt: 2015-10-27 00:27:44 -0400 (Tue, 27 Oct 2015)
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| EllapsedTime: 124.3 seconds
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| RetCode: 0
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| Status: OK
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| CheckDir: acde.Rcheck
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| Warnings: 0
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Command output
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### Running command:
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### rm -rf acde.buildbin-libdir acde.Rcheck && mkdir acde.buildbin-libdir acde.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=acde.buildbin-libdir acde_1.1.0.tar.gz >acde.Rcheck\00install.out 2>&1 && cp acde.Rcheck\00install.out acde-install.out && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=acde.buildbin-libdir --install="check:acde-install.out" --force-multiarch --no-vignettes --timings acde_1.1.0.tar.gz
###
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* using log directory 'c:/biocbld/bbs-3.3-bioc/meat/acde.Rcheck'
* using R Under development (unstable) (2015-09-22 r69418)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'acde/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'acde' version '1.1.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'acde' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [46s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
bcaFDR 34.25 0.05 34.29
** running examples for arch 'x64' ... [52s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
bcaFDR 39.56 0.03 39.61
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'runTests.R' [1s]
[1s] OK
** running tests for arch 'x64' ...
Running 'runTests.R' [1s]
[1s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
acde.Rcheck/00install.out:
install for i386
* installing *source* package 'acde' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'acde' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'acde' as acde_1.1.0.zip
* DONE (acde)
acde.Rcheck/examples_i386/acde-Ex.timings:
| name | user | system | elapsed
|
| ac | 0.17 | 0.00 | 0.17 |
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| acde-package | 3.11 | 0.04 | 3.16 |
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| bcaFDR | 34.25 | 0.05 | 34.29 |
|
| fdr | 0.50 | 0.02 | 0.52 |
|
| phytophthora | 0.02 | 0.00 | 0.01 |
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| plot.STP | 0.58 | 0.00 | 0.58 |
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| plot.TC | 1.95 | 0.00 | 1.96 |
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| print.STP | 0.64 | 0.01 | 0.65 |
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| print.TC | 1.7 | 0.0 | 1.7 |
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| qval | 0.55 | 0.00 | 0.55 |
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| stp | 0.78 | 0.00 | 0.78 |
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| tc | 1.81 | 0.00 | 1.81 |
|
acde.Rcheck/examples_x64/acde-Ex.timings:
| name | user | system | elapsed
|
| ac | 0.21 | 0.00 | 0.21 |
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| acde-package | 2.62 | 0.00 | 2.62 |
|
| bcaFDR | 39.56 | 0.03 | 39.61 |
|
| fdr | 0.69 | 0.00 | 0.69 |
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| phytophthora | 0.02 | 0.00 | 0.01 |
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| plot.STP | 0.62 | 0.00 | 0.63 |
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| plot.TC | 2 | 0 | 2 |
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| print.STP | 0.69 | 0.00 | 0.69 |
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| print.TC | 1.98 | 0.00 | 1.98 |
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| qval | 0.63 | 0.00 | 0.63 |
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| stp | 0.72 | 0.00 | 0.72 |
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| tc | 1.94 | 0.00 | 1.93 |
|