BioC 3.3: CHECK report for SIMAT on linux2.bioconductor.org
This page was generated on 2015-10-27 12:12:53 -0400 (Tue, 27 Oct 2015).
SIMAT 1.3.0 Mo R. Nezami Ranjbar
Snapshot Date: 2015-10-26 20:20:04 -0400 (Mon, 26 Oct 2015) | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/SIMAT | Last Changed Rev: 109592 / Revision: 109948 | Last Changed Date: 2015-10-13 15:59:53 -0400 (Tue, 13 Oct 2015) |
| linux2.bioconductor.org | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | [ OK ] | |  |
windows2.bioconductor.org | Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | OK | OK |  |
Summary
Package: SIMAT |
Version: 1.3.0 |
Command: /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD check --no-vignettes --timings SIMAT_1.3.0.tar.gz |
StartedAt: 2015-10-27 08:08:05 -0400 (Tue, 27 Oct 2015) |
EndedAt: 2015-10-27 08:09:03 -0400 (Tue, 27 Oct 2015) |
EllapsedTime: 57.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: SIMAT.Rcheck |
Warnings: 0 |
Command output
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### Running command:
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### /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD check --no-vignettes --timings SIMAT_1.3.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.3-bioc/meat/SIMAT.Rcheck’
* using R Under development (unstable) (2015-09-09 r69333)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SIMAT/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘SIMAT’ version ‘1.3.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SIMAT’ can be installed ... [4s/4s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [13s/13s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’ [2s/2s]
[2s/2s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SIMAT.Rcheck/00install.out:
* installing *source* package ‘SIMAT’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (SIMAT)
SIMAT.Rcheck/SIMAT-Ex.timings:
name | user | system | elapsed
|
Library | 0.008 | 0.000 | 0.008 |
|
RItable | 0.002 | 0.000 | 0.002 |
|
Run | 0.098 | 0.020 | 0.118 |
|
Targets | 0.002 | 0.000 | 0.002 |
|
getEIC | 0.221 | 0.008 | 0.231 |
|
getPeak | 0.549 | 0.017 | 0.567 |
|
getPeakScore | 0.347 | 0.016 | 0.363 |
|
getRI | 0.001 | 0.000 | 0.002 |
|
getRIStandard | 0.004 | 0.000 | 0.004 |
|
getScore | 0.001 | 0.000 | 0.001 |
|
getTarget | 3.441 | 0.000 | 3.443 |
|
getTargetTable | 0.003 | 0.000 | 0.003 |
|
optFrag | 3.286 | 0.000 | 3.285 |
|
plotEIC | 1.255 | 0.008 | 1.265 |
|
plotTIC | 0.461 | 0.004 | 0.468 |
|
putTargetTable | 0.003 | 0.000 | 0.003 |
|
readCDF | 1.731 | 0.004 | 1.735 |
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