BioC 3.3: CHECK report for RedeR on windows2.bioconductor.org
This page was generated on 2015-10-27 12:14:51 -0400 (Tue, 27 Oct 2015).
RedeR 1.19.0
Mauro Castro
| Snapshot Date: 2015-10-26 20:20:04 -0400 (Mon, 26 Oct 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/RedeR | | Last Changed Rev: 109592 / Revision: 109948 | | Last Changed Date: 2015-10-13 15:59:53 -0400 (Tue, 13 Oct 2015) |
| linux2.bioconductor.org | Linux (Ubuntu 14.04.2 LTS) / x86_64 | OK | OK | OK | |  |
| windows2.bioconductor.org | Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | [ OK ] | OK | |
Summary
| Package: RedeR
|
| Version: 1.19.0
|
| Command: rm -rf RedeR.buildbin-libdir RedeR.Rcheck && mkdir RedeR.buildbin-libdir RedeR.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=RedeR.buildbin-libdir RedeR_1.19.0.tar.gz >RedeR.Rcheck\00install.out 2>&1 && cp RedeR.Rcheck\00install.out RedeR-install.out && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=RedeR.buildbin-libdir --install="check:RedeR-install.out" --force-multiarch --no-vignettes --timings RedeR_1.19.0.tar.gz
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| StartedAt: 2015-10-27 05:26:47 -0400 (Tue, 27 Oct 2015)
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| EndedAt: 2015-10-27 05:27:34 -0400 (Tue, 27 Oct 2015)
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| EllapsedTime: 47.5 seconds
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| RetCode: 0
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| Status: OK
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| CheckDir: RedeR.Rcheck
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| Warnings: 0
|
Command output
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###
### Running command:
###
### rm -rf RedeR.buildbin-libdir RedeR.Rcheck && mkdir RedeR.buildbin-libdir RedeR.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=RedeR.buildbin-libdir RedeR_1.19.0.tar.gz >RedeR.Rcheck\00install.out 2>&1 && cp RedeR.Rcheck\00install.out RedeR-install.out && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=RedeR.buildbin-libdir --install="check:RedeR-install.out" --force-multiarch --no-vignettes --timings RedeR_1.19.0.tar.gz
###
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* using log directory 'c:/biocbld/bbs-3.3-bioc/meat/RedeR.Rcheck'
* using R Under development (unstable) (2015-09-22 r69418)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'RedeR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'RedeR' version '1.19.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'RedeR' can be installed ... OK
* checking installed package size ... NOTE
installed size is 8.8Mb
sub-directories of 1Mb or more:
data 3.2Mb
java 4.3Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
addSubgraph.list,RedPort: no visible global function definition for
'G<-'
addSubgraph,RedPort: no visible global function definition for 'G<-'
nesthc,RedPort: no visible global function definition for 'pvpick'
Undefined global functions or variables:
G<- pvpick
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [1s] OK
** running examples for arch 'x64' ... [1s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
'c:/biocbld/bbs-3.3-bioc/meat/RedeR.Rcheck/00check.log'
for details.
RedeR.Rcheck/00install.out:
install for i386
* installing *source* package 'RedeR' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'RedeR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RedeR' as RedeR_1.19.0.zip
* DONE (RedeR)
RedeR.Rcheck/examples_i386/RedeR-Ex.timings:
| name | user | system | elapsed
|
| RedPort-class | 0 | 0 | 0 |
|
| RedPort | 0 | 0 | 0 |
|
| RedeR.data | 0.51 | 0.00 | 0.51 |
|
| addEdgeBetweenContainers | 0 | 0 | 0 |
|
| addEdges | 0 | 0 | 0 |
|
| addGraph | 0 | 0 | 0 |
|
| addLegend | 0 | 0 | 0 |
|
| addNodes | 0 | 0 | 0 |
|
| addSeries | 0.02 | 0.00 | 0.02 |
|
| addSubgraph | 0 | 0 | 0 |
|
| addSubgraph.list | 0 | 0 | 0 |
|
| att | 0.08 | 0.00 | 0.08 |
|
| calld | 0 | 0 | 0 |
|
| cea | 0.06 | 0.00 | 0.06 |
|
| deSelectEdges | 0 | 0 | 0 |
|
| deSelectGraph | 0 | 0 | 0 |
|
| deSelectNodes | 0 | 0 | 0 |
|
| deleteEdges | 0 | 0 | 0 |
|
| deleteNodes | 0 | 0 | 0 |
|
| deleteSelectedEdges | 0 | 0 | 0 |
|
| deleteSelectedNodes | 0 | 0 | 0 |
|
| duplicateGraph | 0 | 0 | 0 |
|
| exitd | 0 | 0 | 0 |
|
| getContainerComponets | 0 | 0 | 0 |
|
| getEdgeIDs | 0.02 | 0.00 | 0.02 |
|
| getEdges | 0 | 0 | 0 |
|
| getGraph | 0 | 0 | 0 |
|
| getNodeIDs | 0 | 0 | 0 |
|
| getNodes | 0 | 0 | 0 |
|
| getSourceEdgeIDs | 0 | 0 | 0 |
|
| getTargetEdgeIDs | 0 | 0 | 0 |
|
| gtoy.rm | 0 | 0 | 0 |
|
| isDynamicsActive | 0 | 0 | 0 |
|
| mergeNodes | 0 | 0 | 0 |
|
| mergeOutEdges | 0 | 0 | 0 |
|
| nestNodes | 0 | 0 | 0 |
|
| nesthc | 0 | 0 | 0 |
|
| ping | 0 | 0 | 0 |
|
| relax | 0 | 0 | 0 |
|
| resetd | 0 | 0 | 0 |
|
| selectAllEdges | 0 | 0 | 0 |
|
| selectAllNodes | 0 | 0 | 0 |
|
| selectEdges | 0.01 | 0.00 | 0.01 |
|
| selectGraph | 0 | 0 | 0 |
|
| selectNodes | 0 | 0 | 0 |
|
| setArrowDirection | 0 | 0 | 0 |
|
| subg | 0.08 | 0.00 | 0.08 |
|
| updateContainerSize | 0 | 0 | 0 |
|
| updateGraph | 0 | 0 | 0 |
|
| version | 0 | 0 | 0 |
|
RedeR.Rcheck/examples_x64/RedeR-Ex.timings:
| name | user | system | elapsed
|
| RedPort-class | 0 | 0 | 0 |
|
| RedPort | 0 | 0 | 0 |
|
| RedeR.data | 0.46 | 0.01 | 0.47 |
|
| addEdgeBetweenContainers | 0 | 0 | 0 |
|
| addEdges | 0.00 | 0.02 | 0.01 |
|
| addGraph | 0 | 0 | 0 |
|
| addLegend | 0 | 0 | 0 |
|
| addNodes | 0 | 0 | 0 |
|
| addSeries | 0 | 0 | 0 |
|
| addSubgraph | 0 | 0 | 0 |
|
| addSubgraph.list | 0 | 0 | 0 |
|
| att | 0.07 | 0.00 | 0.08 |
|
| calld | 0 | 0 | 0 |
|
| cea | 0.05 | 0.00 | 0.05 |
|
| deSelectEdges | 0 | 0 | 0 |
|
| deSelectGraph | 0 | 0 | 0 |
|
| deSelectNodes | 0 | 0 | 0 |
|
| deleteEdges | 0 | 0 | 0 |
|
| deleteNodes | 0 | 0 | 0 |
|
| deleteSelectedEdges | 0 | 0 | 0 |
|
| deleteSelectedNodes | 0 | 0 | 0 |
|
| duplicateGraph | 0 | 0 | 0 |
|
| exitd | 0 | 0 | 0 |
|
| getContainerComponets | 0 | 0 | 0 |
|
| getEdgeIDs | 0 | 0 | 0 |
|
| getEdges | 0 | 0 | 0 |
|
| getGraph | 0 | 0 | 0 |
|
| getNodeIDs | 0 | 0 | 0 |
|
| getNodes | 0 | 0 | 0 |
|
| getSourceEdgeIDs | 0 | 0 | 0 |
|
| getTargetEdgeIDs | 0 | 0 | 0 |
|
| gtoy.rm | 0 | 0 | 0 |
|
| isDynamicsActive | 0 | 0 | 0 |
|
| mergeNodes | 0.01 | 0.00 | 0.02 |
|
| mergeOutEdges | 0 | 0 | 0 |
|
| nestNodes | 0 | 0 | 0 |
|
| nesthc | 0 | 0 | 0 |
|
| ping | 0 | 0 | 0 |
|
| relax | 0 | 0 | 0 |
|
| resetd | 0 | 0 | 0 |
|
| selectAllEdges | 0 | 0 | 0 |
|
| selectAllNodes | 0 | 0 | 0 |
|
| selectEdges | 0.02 | 0.00 | 0.01 |
|
| selectGraph | 0 | 0 | 0 |
|
| selectNodes | 0 | 0 | 0 |
|
| setArrowDirection | 0 | 0 | 0 |
|
| subg | 0.08 | 0.00 | 0.08 |
|
| updateContainerSize | 0 | 0 | 0 |
|
| updateGraph | 0 | 0 | 0 |
|
| version | 0 | 0 | 0 |
|