BioC 3.3: CHECK report for PANR on windows2.bioconductor.org
This page was generated on 2015-10-27 12:14:53 -0400 (Tue, 27 Oct 2015).
PANR 1.17.0 Xin Wang
Snapshot Date: 2015-10-26 20:20:04 -0400 (Mon, 26 Oct 2015) | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/PANR | Last Changed Rev: 109592 / Revision: 109948 | Last Changed Date: 2015-10-13 15:59:53 -0400 (Tue, 13 Oct 2015) |
| linux2.bioconductor.org | Linux (Ubuntu 14.04.2 LTS) / x86_64 | OK | OK | OK | |  |
windows2.bioconductor.org | Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | [ OK ] | OK |  |
Summary
Package: PANR
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Version: 1.17.0
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Command: rm -rf PANR.buildbin-libdir PANR.Rcheck && mkdir PANR.buildbin-libdir PANR.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=PANR.buildbin-libdir PANR_1.17.0.tar.gz >PANR.Rcheck\00install.out 2>&1 && cp PANR.Rcheck\00install.out PANR-install.out && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=PANR.buildbin-libdir --install="check:PANR-install.out" --force-multiarch --no-vignettes --timings PANR_1.17.0.tar.gz
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StartedAt: 2015-10-27 04:49:54 -0400 (Tue, 27 Oct 2015)
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EndedAt: 2015-10-27 04:51:32 -0400 (Tue, 27 Oct 2015)
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EllapsedTime: 97.9 seconds
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RetCode: 0
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Status: OK
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CheckDir: PANR.Rcheck
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Warnings: 0
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Command output
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### Running command:
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### rm -rf PANR.buildbin-libdir PANR.Rcheck && mkdir PANR.buildbin-libdir PANR.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=PANR.buildbin-libdir PANR_1.17.0.tar.gz >PANR.Rcheck\00install.out 2>&1 && cp PANR.Rcheck\00install.out PANR-install.out && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=PANR.buildbin-libdir --install="check:PANR-install.out" --force-multiarch --no-vignettes --timings PANR_1.17.0.tar.gz
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* using log directory 'c:/biocbld/bbs-3.3-bioc/meat/PANR.Rcheck'
* using R Under development (unstable) (2015-09-22 r69418)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'PANR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'PANR' version '1.17.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'PANR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [31s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
fitNULL 28.83 0.13 29.28
** running examples for arch 'x64' ... [26s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
fitNULL 23.84 0.03 23.87
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
PANR.Rcheck/00install.out:
install for i386
* installing *source* package 'PANR' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'PANR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'PANR' as PANR_1.17.0.zip
* DONE (PANR)
PANR.Rcheck/examples_i386/PANR-Ex.timings:
name | user | system | elapsed
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BetaMixture-class | 0 | 0 | 0 |
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PAN-class | 0 | 0 | 0 |
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SNR2p | 0 | 0 | 0 |
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assoScore | 0.01 | 0.00 | 0.02 |
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buildPAN | 0.52 | 0.01 | 0.53 |
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cosineSim | 0 | 0 | 0 |
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data-Bakal2007 | 0.01 | 0.00 | 0.02 |
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exportPAN | 0 | 0 | 0 |
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fitBM | 0 | 0 | 0 |
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fitNULL | 28.83 | 0.13 | 29.28 |
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infer | 0.48 | 0.00 | 0.49 |
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p2SNR | 0 | 0 | 0 |
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permNULL | 0.02 | 0.00 | 0.01 |
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pvclustModule | 0 | 0 | 0 |
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sigModules | 0 | 0 | 0 |
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summarize | 0.01 | 0.00 | 0.02 |
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view | 0.29 | 0.00 | 0.28 |
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viewLegend | 0.01 | 0.00 | 0.02 |
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viewNestedModules | 0 | 0 | 0 |
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viewPAN | 0 | 0 | 0 |
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PANR.Rcheck/examples_x64/PANR-Ex.timings:
name | user | system | elapsed
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BetaMixture-class | 0 | 0 | 0 |
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PAN-class | 0 | 0 | 0 |
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SNR2p | 0 | 0 | 0 |
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assoScore | 0.02 | 0.00 | 0.02 |
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buildPAN | 0.62 | 0.00 | 0.62 |
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cosineSim | 0.02 | 0.00 | 0.02 |
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data-Bakal2007 | 0.02 | 0.00 | 0.02 |
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exportPAN | 0 | 0 | 0 |
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fitBM | 0 | 0 | 0 |
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fitNULL | 23.84 | 0.03 | 23.87 |
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infer | 0.69 | 0.00 | 0.69 |
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p2SNR | 0 | 0 | 0 |
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permNULL | 0.01 | 0.00 | 0.02 |
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pvclustModule | 0 | 0 | 0 |
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sigModules | 0 | 0 | 0 |
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summarize | 0.02 | 0.01 | 0.03 |
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view | 0.25 | 0.02 | 0.27 |
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viewLegend | 0 | 0 | 0 |
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viewNestedModules | 0 | 0 | 0 |
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viewPAN | 0 | 0 | 0 |
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