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BioC 3.3: CHECK report for LPE on windows2.bioconductor.org

This page was generated on 2015-10-27 12:13:56 -0400 (Tue, 27 Oct 2015).

Package 574/1104HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
LPE 1.45.0
Nitin Jain
Snapshot Date: 2015-10-26 20:20:04 -0400 (Mon, 26 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/LPE
Last Changed Rev: 109592 / Revision: 109948
Last Changed Date: 2015-10-13 15:59:53 -0400 (Tue, 13 Oct 2015)
linux2.bioconductor.org Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
windows2.bioconductor.org Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64  OK  OK [ OK ] OK UNNEEDED, same version exists in internal repository

Summary

Package: LPE
Version: 1.45.0
Command: rm -rf LPE.buildbin-libdir LPE.Rcheck && mkdir LPE.buildbin-libdir LPE.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=LPE.buildbin-libdir LPE_1.45.0.tar.gz >LPE.Rcheck\00install.out 2>&1 && cp LPE.Rcheck\00install.out LPE-install.out && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=LPE.buildbin-libdir --install="check:LPE-install.out" --force-multiarch --no-vignettes --timings LPE_1.45.0.tar.gz
StartedAt: 2015-10-27 03:38:40 -0400 (Tue, 27 Oct 2015)
EndedAt: 2015-10-27 03:39:08 -0400 (Tue, 27 Oct 2015)
EllapsedTime: 28.4 seconds
RetCode: 0
Status:  OK  
CheckDir: LPE.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf LPE.buildbin-libdir LPE.Rcheck && mkdir LPE.buildbin-libdir LPE.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=LPE.buildbin-libdir LPE_1.45.0.tar.gz >LPE.Rcheck\00install.out 2>&1 && cp LPE.Rcheck\00install.out LPE-install.out  && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=LPE.buildbin-libdir --install="check:LPE-install.out" --force-multiarch --no-vignettes --timings LPE_1.45.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'c:/biocbld/bbs-3.3-bioc/meat/LPE.Rcheck'
* using R Under development (unstable) (2015-09-22 r69418)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'LPE/DESCRIPTION' ... OK
* this is package 'LPE' version '1.45.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'LPE' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [5s] OK
** running examples for arch 'x64' ... [5s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

LPE.Rcheck/00install.out:


install for i386

* installing *source* package 'LPE' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'LPE' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'LPE' as LPE_1.45.0.zip
* DONE (LPE)

LPE.Rcheck/examples_i386/LPE-Ex.timings:

nameusersystemelapsed
am.trans000
baseOlig.error0.280.000.28
baseOlig.error.step10.120.000.12
baseOlig.error.step20.210.020.22
fdr.adjust1.170.001.17
fixbounds.predict.smooth.spline0.200.000.21
iqr000
lowess.normalize0.050.000.04
lpe0.400.000.41
mt.rawp2adjp0.410.000.40
n.genes.adaptive.int0.150.000.16
permute000
preprocess0.100.000.09
quan.norm000
quartile.normalize0.040.010.07
resamp.adj1.210.001.20

LPE.Rcheck/examples_x64/LPE-Ex.timings:

nameusersystemelapsed
am.trans000
baseOlig.error0.360.000.36
baseOlig.error.step10.140.000.14
baseOlig.error.step20.180.000.19
fdr.adjust1.130.001.13
fixbounds.predict.smooth.spline0.230.000.23
iqr000
lowess.normalize0.040.000.03
lpe0.450.020.47
mt.rawp2adjp0.340.000.34
n.genes.adaptive.int0.140.000.14
permute000
preprocess0.10.00.1
quan.norm000
quartile.normalize0.010.010.03
resamp.adj1.460.001.45