GenomicRanges 1.23.1
Bioconductor Package Maintainer
| Snapshot Date: 2015-10-26 20:20:04 -0400 (Mon, 26 Oct 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GenomicRanges | | Last Changed Rev: 109852 / Revision: 109948 | | Last Changed Date: 2015-10-22 23:04:27 -0400 (Thu, 22 Oct 2015) |
| linux2.bioconductor.org | Linux (Ubuntu 14.04.2 LTS) / x86_64 | OK | OK | WARNINGS | |  |
| windows2.bioconductor.org | Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64 | [ OK ] | OK | WARNINGS | OK | |
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### Running command:
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### C:\cygwin64\bin\curl.exe -O http://linux2.bioconductor.org/BBS/3.3/bioc/src/contrib/GenomicRanges_1.23.1.tar.gz && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch GenomicRanges_1.23.1.tar.gz && rm GenomicRanges_1.23.1.tar.gz
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install for i386
* installing to library 'c:/biocbld/bbs-3.3-bioc/R/library'
* installing *source* package 'GenomicRanges' ...
** libs
gcc -m32 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I"c:/biocbld/bbs-3.3-bioc/R/library/S4Vectors/include" -I"c:/biocbld/bbs-3.3-bioc/R/library/IRanges/include" -I"d:/RCompile/r-compiling/local/local320/include" -O3 -Wall -std=gnu99 -mtune=core2 -c IRanges_stubs.c -o IRanges_stubs.o
gcc -m32 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I"c:/biocbld/bbs-3.3-bioc/R/library/S4Vectors/include" -I"c:/biocbld/bbs-3.3-bioc/R/library/IRanges/include" -I"d:/RCompile/r-compiling/local/local320/include" -O3 -Wall -std=gnu99 -mtune=core2 -c R_init_GenomicRanges.c -o R_init_GenomicRanges.o
gcc -m32 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I"c:/biocbld/bbs-3.3-bioc/R/library/S4Vectors/include" -I"c:/biocbld/bbs-3.3-bioc/R/library/IRanges/include" -I"d:/RCompile/r-compiling/local/local320/include" -O3 -Wall -std=gnu99 -mtune=core2 -c S4Vectors_stubs.c -o S4Vectors_stubs.o
gcc -m32 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I"c:/biocbld/bbs-3.3-bioc/R/library/S4Vectors/include" -I"c:/biocbld/bbs-3.3-bioc/R/library/IRanges/include" -I"d:/RCompile/r-compiling/local/local320/include" -O3 -Wall -std=gnu99 -mtune=core2 -c transcript_utils.c -o transcript_utils.o
transcript_utils.c: In function 'tlocs2rlocs':
transcript_utils.c:143:38: warning: 'end' may be used uninitialized in this function [-Wuninitialized]
transcript_utils.c:120:24: note: 'end' was declared here
transcript_utils.c:143:38: warning: 'start' may be used uninitialized in this function [-Wuninitialized]
transcript_utils.c:120:17: note: 'start' was declared here
gcc -m32 -shared -s -static-libgcc -o GenomicRanges.dll tmp.def IRanges_stubs.o R_init_GenomicRanges.o S4Vectors_stubs.o transcript_utils.o -Ld:/RCompile/r-compiling/local/local320/lib/i386 -Ld:/RCompile/r-compiling/local/local320/lib -Lc:/biocbld/BBS-3˜1.3-B/R/bin/i386 -lR
installing to c:/biocbld/bbs-3.3-bioc/R/library/GenomicRanges/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing to library 'c:/biocbld/bbs-3.3-bioc/R/library'
* installing *source* package 'GenomicRanges' ...
** libs
gcc -m64 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I"c:/biocbld/bbs-3.3-bioc/R/library/S4Vectors/include" -I"c:/biocbld/bbs-3.3-bioc/R/library/IRanges/include" -I"d:/RCompile/r-compiling/local/local320/include" -O2 -Wall -std=gnu99 -mtune=core2 -c IRanges_stubs.c -o IRanges_stubs.o
gcc -m64 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I"c:/biocbld/bbs-3.3-bioc/R/library/S4Vectors/include" -I"c:/biocbld/bbs-3.3-bioc/R/library/IRanges/include" -I"d:/RCompile/r-compiling/local/local320/include" -O2 -Wall -std=gnu99 -mtune=core2 -c R_init_GenomicRanges.c -o R_init_GenomicRanges.o
gcc -m64 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I"c:/biocbld/bbs-3.3-bioc/R/library/S4Vectors/include" -I"c:/biocbld/bbs-3.3-bioc/R/library/IRanges/include" -I"d:/RCompile/r-compiling/local/local320/include" -O2 -Wall -std=gnu99 -mtune=core2 -c S4Vectors_stubs.c -o S4Vectors_stubs.o
gcc -m64 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I"c:/biocbld/bbs-3.3-bioc/R/library/S4Vectors/include" -I"c:/biocbld/bbs-3.3-bioc/R/library/IRanges/include" -I"d:/RCompile/r-compiling/local/local320/include" -O2 -Wall -std=gnu99 -mtune=core2 -c transcript_utils.c -o transcript_utils.o
transcript_utils.c: In function 'tlocs2rlocs':
transcript_utils.c:143:38: warning: 'end' may be used uninitialized in this function [-Wuninitialized]
transcript_utils.c:120:24: note: 'end' was declared here
transcript_utils.c:143:38: warning: 'start' may be used uninitialized in this function [-Wuninitialized]
transcript_utils.c:120:17: note: 'start' was declared here
gcc -m64 -shared -s -static-libgcc -o GenomicRanges.dll tmp.def IRanges_stubs.o R_init_GenomicRanges.o S4Vectors_stubs.o transcript_utils.o -Ld:/RCompile/r-compiling/local/local320/lib/x64 -Ld:/RCompile/r-compiling/local/local320/lib -Lc:/biocbld/BBS-3˜1.3-B/R/bin/x64 -lR
installing to c:/biocbld/bbs-3.3-bioc/R/library/GenomicRanges/libs/x64
** testing if installed package can be loaded
* DONE (GenomicRanges)