ChemmineOB 1.9.0
Thomas Girke
| Snapshot Date: 2015-10-26 20:20:04 -0400 (Mon, 26 Oct 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ChemmineOB | | Last Changed Rev: 109592 / Revision: 109948 | | Last Changed Date: 2015-10-13 15:59:53 -0400 (Tue, 13 Oct 2015) |
| linux2.bioconductor.org | Linux (Ubuntu 14.04.2 LTS) / x86_64 | OK | OK | WARNINGS | |  |
| windows2.bioconductor.org | Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64 | [ OK ] | OK | WARNINGS | OK | |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin64\bin\curl.exe -O http://linux2.bioconductor.org/BBS/3.3/bioc/src/contrib/ChemmineOB_1.9.0.tar.gz && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch ChemmineOB_1.9.0.tar.gz && rm ChemmineOB_1.9.0.tar.gz
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 957k 100 957k 0 0 78.9M 0 --:--:-- --:--:-- --:--:-- 133M
install for i386
* installing to library 'c:/biocbld/bbs-3.3-bioc/R/library'
* installing *source* package 'ChemmineOB' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
g++ -m32 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I"c:/biocbld/bbs-3.3-bioc/R/library/BH/include" -I"c:/biocbld/bbs-3.3-bioc/R/library/Rcpp/include" -I"d:/RCompile/r-compiling/local/local320/include" -Ic:/openbabel_src/i386/include -O2 -Wall -mtune=core2 -c ChemmineOB.cpp -o ChemmineOB.o
ChemmineOB.cpp: In function 'SEXPREC* SWIG_MakePtr(void*, const char*, R_SWIG_Owner)':
ChemmineOB.cpp:953:15: warning: variable 'p' set but not used [-Wunused-but-set-variable]
g++ -m32 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I"c:/biocbld/bbs-3.3-bioc/R/library/BH/include" -I"c:/biocbld/bbs-3.3-bioc/R/library/Rcpp/include" -I"d:/RCompile/r-compiling/local/local320/include" -Ic:/openbabel_src/i386/include -O2 -Wall -mtune=core2 -c canonical.cpp -o canonical.o
g++ -m32 -shared -s -static-libgcc -o ChemmineOB.dll tmp.def ChemmineOB.o canonical.o -Lc:/openbabel/i386/bin -lopenbabel -LC:/biocbld/bbs-3.3-bioc/R/library/zlibbioc/libs/i386 -lzlib1bioc -Ld:/RCompile/r-compiling/local/local320/lib/i386 -Ld:/RCompile/r-compiling/local/local320/lib -Lc:/biocbld/BBS-3˜1.3-B/R/bin/i386 -lR
installing to c:/biocbld/bbs-3.3-bioc/R/library/ChemmineOB/libs/i386
** R
** inst
** preparing package for lazy loading
Creating a generic function for 'print' from package 'base' in package 'ChemmineOB'
in method for 'copyToR' with signature '"_p_std::pair<(unsigned int,unsigned int)>"': no definition for class "_p_std::pair<(unsigned int,unsigned int)>"
in method for 'copyToR' with signature '"_p_OpenBabel::DoubleType"': no definition for class "_p_OpenBabel::DoubleType"
in method for 'copyToR' with signature '"_p_OpenBabel::CharPtrLess"': no definition for class "_p_OpenBabel::CharPtrLess"
in method for 'copyToR' with signature '"_p_OpenBabel::FptIndexHeader"': no definition for class "_p_OpenBabel::FptIndexHeader"
in method for 'copyToR' with signature '"_p_OpenBabel::LineSearchType"': no definition for class "_p_OpenBabel::LineSearchType"
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing to library 'c:/biocbld/bbs-3.3-bioc/R/library'
* installing *source* package 'ChemmineOB' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
g++ -m64 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I"c:/biocbld/bbs-3.3-bioc/R/library/BH/include" -I"c:/biocbld/bbs-3.3-bioc/R/library/Rcpp/include" -I"d:/RCompile/r-compiling/local/local320/include" -Ic:/openbabel_src/x64/include -O2 -Wall -mtune=core2 -c ChemmineOB.cpp -o ChemmineOB.o
ChemmineOB.cpp: In function 'SEXPREC* SWIG_MakePtr(void*, const char*, R_SWIG_Owner)':
ChemmineOB.cpp:953:15: warning: variable 'p' set but not used [-Wunused-but-set-variable]
g++ -m64 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I"c:/biocbld/bbs-3.3-bioc/R/library/BH/include" -I"c:/biocbld/bbs-3.3-bioc/R/library/Rcpp/include" -I"d:/RCompile/r-compiling/local/local320/include" -Ic:/openbabel_src/x64/include -O2 -Wall -mtune=core2 -c canonical.cpp -o canonical.o
g++ -m64 -shared -s -static-libgcc -o ChemmineOB.dll tmp.def ChemmineOB.o canonical.o -Lc:/openbabel/x64/bin -lopenbabel -LC:/biocbld/bbs-3.3-bioc/R/library/zlibbioc/libs/x64 -lzlib1bioc -Ld:/RCompile/r-compiling/local/local320/lib/x64 -Ld:/RCompile/r-compiling/local/local320/lib -Lc:/biocbld/BBS-3˜1.3-B/R/bin/x64 -lR
installing to c:/biocbld/bbs-3.3-bioc/R/library/ChemmineOB/libs/x64
** testing if installed package can be loaded
* DONE (ChemmineOB)