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BioC 3.3: BUILD BIN report for BioQC on morelia

This page was generated on 2016-04-21 13:27:16 -0700 (Thu, 21 Apr 2016).

Package 115/1210HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BioQC 0.99.3
Jitao David Zhang
Snapshot Date: 2016-04-20 17:20:35 -0700 (Wed, 20 Apr 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/BioQC
Last Changed Rev: 111096 / Revision: 116626
Last Changed Date: 2015-12-01 14:52:06 -0800 (Tue, 01 Dec 2015)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: BioQC
Version: 0.99.3
Command: rm -rf BioQC.buildbin-libdir && mkdir BioQC.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh BioQC_0.99.3.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R BioQC.buildbin-libdir
StartedAt: 2016-04-21 08:43:47 -0700 (Thu, 21 Apr 2016)
EndedAt: 2016-04-21 08:43:59 -0700 (Thu, 21 Apr 2016)
EllapsedTime: 11.3 seconds
RetCode: 0
Status:  OK 
PackageFile: BioQC_0.99.3.tgz
PackageFileSize: 264.4 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf BioQC.buildbin-libdir && mkdir BioQC.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh BioQC_0.99.3.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R BioQC.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=BioQC.buildbin-libdir BioQC_0.99.3.tar.gz'
>>>>>>> 

* installing *source* package ‘BioQC’ ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG `/Library/Frameworks/R.framework/Resources/bin/Rscript -e 'Rcpp:::CxxFlags()'` -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c bioqc.c -o bioqc.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG `/Library/Frameworks/R.framework/Resources/bin/Rscript -e 'Rcpp:::CxxFlags()'` -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c gini.c -o gini.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG `/Library/Frameworks/R.framework/Resources/bin/Rscript -e 'Rcpp:::CxxFlags()'` -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c read_gmt.cpp -o read_gmt.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG `/Library/Frameworks/R.framework/Resources/bin/Rscript -e 'Rcpp:::CxxFlags()'` -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c stat_rank.c -o stat_rank.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG `/Library/Frameworks/R.framework/Resources/bin/Rscript -e 'Rcpp:::CxxFlags()'` -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c wmw_test_R.c -o wmw_test_R.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o BioQC.so bioqc.o gini.o read_gmt.o stat_rank.o wmw_test_R.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.3-bioc/meat/BioQC.buildbin-libdir/BioQC/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (BioQC)


>>>>>>> 
>>>>>>> FIXING LINKS FOR BioQC.buildbin-libdir/BioQC/libs//BioQC.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libgcc_s.1.dylib" "BioQC.buildbin-libdir/BioQC/libs//BioQC.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libgfortran.3.dylib" "BioQC.buildbin-libdir/BioQC/libs//BioQC.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libreadline.5.2.dylib" "BioQC.buildbin-libdir/BioQC/libs//BioQC.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libreadline.dylib" "BioQC.buildbin-libdir/BioQC/libs//BioQC.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libquadmath.0.dylib" "BioQC.buildbin-libdir/BioQC/libs//BioQC.so"