| Back to Long Tests report for BioC 3.21 |
This page was generated on 2025-03-15 23:55 -0400 (Sat, 15 Mar 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-03-13 r87965) -- "Unsuffered Consequences" | 196 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences" | 4537 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" | 4567 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 6/30 | Hostname | OS / Arch | CHECK | |||||||
| biodbChebi 1.13.0 (landing page) Pierrick Roger
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | ERROR | |||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | ||||||||
|
To the developers/maintainers of the biodbChebi package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: biodbChebi |
| Version: 1.13.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.13.0.tar.gz |
| StartedAt: 2025-03-15 16:01:07 -0400 (Sat, 15 Mar 2025) |
| EndedAt: 2025-03-15 16:05:44 -0400 (Sat, 15 Mar 2025) |
| EllapsedTime: 276.9 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: biodbChebi.Rcheck |
| Warnings: 0 |
biodbChebi.Rcheck/tests/testthat.Rout
R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2025-03-15 16:01:44.559][biodb::testContext]
biodb.INFO [2025-03-15 16:01:44.562][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-15 16:01:44.562][biodb::testContext] Test context - Generic long tests
biodb.INFO [2025-03-15 16:01:44.563][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-15 16:01:44.564][biodb::testContext]
biodb.INFO [2025-03-15 16:01:44.570][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.15.0.
biodb.DEBUG[2025-03-15 16:01:44.571][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-03-15 16:01:44.577][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-15 16:01:44.577][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-03-15 16:01:44.578][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-03-15 16:01:44.579][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:44.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:44.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:44.581][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-03-15 16:01:44.595][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-03-15 16:01:44.596][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:44.597][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:44.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:44.598][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-03-15 16:01:44.599][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-03-15 16:01:44.600][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:44.600][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:44.601][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:44.602][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-03-15 16:01:44.603][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-03-15 16:01:44.603][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-03-15 16:01:44.604][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:44.605][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:44.606][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:44.607][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-03-15 16:01:44.608][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-03-15 16:01:44.608][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-03-15 16:01:44.609][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:44.610][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:44.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:44.611][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-03-15 16:01:44.612][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-03-15 16:01:44.613][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:44.613][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:44.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:44.615][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-03-15 16:01:44.616][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-03-15 16:01:44.617][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-03-15 16:01:44.617][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:44.618][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:44.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:44.619][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-03-15 16:01:44.620][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-03-15 16:01:44.621][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:44.621][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:44.622][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:44.623][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-03-15 16:01:44.624][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-03-15 16:01:44.624][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-03-15 16:01:44.625][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:44.626][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:44.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:44.627][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-03-15 16:01:44.628][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-03-15 16:01:44.629][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-03-15 16:01:44.630][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-03-15 16:01:44.630][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-03-15 16:01:44.631][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-03-15 16:01:44.632][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:44.633][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:44.633][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:44.634][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-03-15 16:01:44.635][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-03-15 16:01:44.636][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:44.637][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:44.637][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:44.638][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-03-15 16:01:44.639][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-03-15 16:01:44.639][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:44.640][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:44.641][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:44.642][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-03-15 16:01:44.643][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-03-15 16:01:44.643][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:44.644][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:44.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:44.645][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-03-15 16:01:44.646][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-03-15 16:01:44.647][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:44.648][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:44.648][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:44.649][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-03-15 16:01:44.650][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-03-15 16:01:44.650][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:44.651][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:44.652][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:44.653][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-03-15 16:01:44.653][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-03-15 16:01:44.671][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-03-15 16:01:44.672][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:44.673][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:44.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:44.674][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-03-15 16:01:44.675][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-03-15 16:01:44.676][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-03-15 16:01:44.676][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:44.677][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:44.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:44.681][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-03-15 16:01:44.706][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-15 16:01:44.725][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-03-15 16:01:44.726][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-15 16:01:44.727][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-15 16:01:44.728][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-15 16:01:44.729][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-15 16:01:44.730][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-15 16:01:44.730][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-15 16:01:44.731][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-15 16:01:44.732][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-15 16:01:44.733][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-15 16:01:44.734][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-03-15 16:01:44.735][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-15 16:01:44.736][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:01:44.736][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-15 16:01:44.737][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-15 16:01:44.737][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-15 16:01:44.737][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-15 16:01:44.737][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-15 16:01:44.737][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-15 16:01:44.738][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-15 16:01:44.739][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:01:44.740][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:01:44.741][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-15 16:01:44.741][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:01:44.742][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:01:44.743][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-15 16:01:44.744][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:01:44.744][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-15 16:01:44.745][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-15 16:01:44.746][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-15 16:01:44.747][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:01:44.748][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-03-15 16:01:44.749][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-15 16:01:44.750][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-03-15 16:01:44.751][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-15 16:01:44.752][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-15 16:01:44.753][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-15 16:01:44.753][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-15 16:01:44.754][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-15 16:01:44.755][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-15 16:01:44.756][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-15 16:01:44.757][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-15 16:01:44.757][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-15 16:01:44.758][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-03-15 16:01:44.759][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-15 16:01:44.760][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:01:44.761][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-15 16:01:44.761][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-15 16:01:44.761][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-15 16:01:44.761][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-15 16:01:44.761][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-15 16:01:44.761][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-15 16:01:44.762][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-15 16:01:44.763][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:01:44.764][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:01:44.765][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-15 16:01:44.766][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:01:44.766][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:01:44.767][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-15 16:01:44.768][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:01:44.769][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-15 16:01:44.770][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-15 16:01:44.770][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-15 16:01:44.771][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:01:44.772][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-03-15 16:01:44.774][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-15 16:01:44.775][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-03-15 16:01:44.776][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-15 16:01:44.776][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-15 16:01:44.777][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-15 16:01:44.778][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-15 16:01:44.779][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-15 16:01:44.780][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-15 16:01:44.781][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-15 16:01:44.782][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-15 16:01:44.782][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-15 16:01:44.783][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-03-15 16:01:44.784][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-15 16:01:44.785][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:01:44.786][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-15 16:01:44.787][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:01:44.788][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-15 16:01:44.788][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:01:44.789][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:01:44.790][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-15 16:01:44.791][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:01:44.791][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:01:44.792][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-15 16:01:44.793][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:01:44.794][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-15 16:01:44.794][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-15 16:01:44.795][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-15 16:01:44.796][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:01:44.797][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-03-15 16:01:44.798][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-15 16:01:44.799][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-03-15 16:01:44.800][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-15 16:01:44.801][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-15 16:01:44.802][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-15 16:01:44.803][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-15 16:01:44.803][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-15 16:01:44.804][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-15 16:01:44.805][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-15 16:01:44.806][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-15 16:01:44.807][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-15 16:01:44.807][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-03-15 16:01:44.808][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-15 16:01:44.809][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:01:44.810][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-15 16:01:44.810][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:01:44.811][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-15 16:01:44.812][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:01:44.813][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:01:44.814][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-15 16:01:44.814][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:01:44.815][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:01:44.816][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-15 16:01:44.817][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:01:44.817][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-15 16:01:44.818][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-15 16:01:44.819][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-15 16:01:44.820][self$setPropertyValue]
biodb.DEBUG[2025-03-15 16:01:44.823][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-15 16:01:44.823][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:44.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:44.825][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:44.825][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:44.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:44.827][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:44.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:44.828][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:44.829][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:44.829][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:44.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:44.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:44.832][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:44.832][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:44.833][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:44.834][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:44.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:44.835][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:44.835][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:44.836][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:44.837][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:44.837][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:44.838][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:44.839][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:44.840][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:44.840][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:44.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:44.842][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:44.842][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:44.843][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:44.844][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:44.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:44.845][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:44.846][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:44.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:44.847][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:44.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:44.849][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:44.849][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:44.850][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:44.851][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:44.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:44.852][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:44.853][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:44.854][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:44.855][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:44.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:44.856][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:44.857][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:44.858][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:44.858][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:44.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:44.860][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:44.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:44.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:44.862][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:44.863][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:44.864][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:44.865][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:44.869][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:44.870][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:44.871][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:44.871][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:44.872][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:44.873][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:44.873][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:44.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:44.875][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:44.876][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:44.876][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:44.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:44.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:44.878][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:44.879][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:44.880][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:44.880][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:44.881][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:44.882][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:44.883][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:44.883][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:44.884][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:44.885][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:44.886][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:44.886][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:44.887][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:44.888][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:44.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:44.889][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-03-15 16:01:44.893][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-03-15 16:01:44.894][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-03-15 16:01:44.895][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-03-15 16:01:44.896][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-03-15 16:01:44.897][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-15 16:01:44.898][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-03-15 16:01:44.900][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-03-15 16:01:44.901][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-03-15 16:01:44.902][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-15 16:01:44.903][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-15 16:01:44.904][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-03-15 16:01:44.905][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-03-15 16:01:44.906][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-03-15 16:01:44.907][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-03-15 16:01:44.909][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-15 16:01:44.910][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-03-15 16:01:44.911][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-03-15 16:01:44.912][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-03-15 16:01:44.913][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-03-15 16:01:44.914][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-03-15 16:01:44.915][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-03-15 16:01:44.916][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-03-15 16:01:44.917][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-03-15 16:01:44.918][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-03-15 16:01:44.920][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-03-15 16:01:44.921][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-03-15 16:01:44.922][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-03-15 16:01:44.923][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-03-15 16:01:44.924][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-03-15 16:01:44.925][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-03-15 16:01:44.926][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-03-15 16:01:44.927][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-03-15 16:01:44.928][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-03-15 16:01:44.929][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-03-15 16:01:44.930][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-03-15 16:01:44.931][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-03-15 16:01:44.932][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-03-15 16:01:44.933][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-03-15 16:01:44.934][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-03-15 16:01:44.935][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-03-15 16:01:44.937][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-03-15 16:01:44.938][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-03-15 16:01:44.939][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-03-15 16:01:44.940][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-03-15 16:01:44.941][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-03-15 16:01:44.942][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-03-15 16:01:44.943][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-03-15 16:01:44.945][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-03-15 16:01:44.946][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-03-15 16:01:44.947][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-03-15 16:01:44.948][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-03-15 16:01:44.949][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-03-15 16:01:44.950][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-03-15 16:01:44.951][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-03-15 16:01:44.952][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-03-15 16:01:44.953][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-03-15 16:01:44.954][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-03-15 16:01:44.956][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-03-15 16:01:44.957][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-03-15 16:01:44.958][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-03-15 16:01:44.959][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-03-15 16:01:44.960][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-03-15 16:01:44.961][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-03-15 16:01:44.962][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-03-15 16:01:44.963][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-03-15 16:01:44.965][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-03-15 16:01:44.966][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-03-15 16:01:44.967][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-03-15 16:01:44.968][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-03-15 16:01:44.969][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-03-15 16:01:44.970][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-03-15 16:01:44.971][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-03-15 16:01:44.972][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-03-15 16:01:44.973][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-03-15 16:01:44.974][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-03-15 16:01:44.975][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-03-15 16:01:44.976][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-03-15 16:01:44.977][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-03-15 16:01:44.978][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-03-15 16:01:44.980][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-03-15 16:01:44.981][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-03-15 16:01:44.982][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-03-15 16:01:44.986][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-03-15 16:01:44.988][initialize] This is biodb version 1.15.0.
biodb.DEBUG[2025-03-15 16:01:44.990][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-15 16:01:44.991][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:44.992][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:44.992][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:44.993][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:44.997][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:44.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:44.998][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:44.999][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:45.000][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:45.001][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:45.001][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:45.002][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:45.003][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:45.003][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:45.004][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:45.005][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:45.006][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:45.006][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:45.007][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:45.008][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:45.013][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:45.014][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:45.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:45.015][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:45.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:45.017][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:45.017][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:45.018][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:45.018][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:45.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:45.020][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:45.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:45.021][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:45.022][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:45.023][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:45.023][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:45.024][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:45.024][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:45.025][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:45.026][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:45.026][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:45.027][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:45.028][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:45.028][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:45.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:45.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:45.030][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:45.031][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:45.032][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:45.032][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:45.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:45.034][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:45.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:45.035][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:45.036][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:45.036][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:45.037][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:45.038][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:45.039][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:45.040][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:45.041][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:45.041][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:45.042][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:45.043][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:45.044][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:45.045][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:45.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:45.046][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:45.047][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:45.048][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:45.048][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:45.049][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:45.050][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:45.050][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:45.051][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:45.051][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:45.052][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:45.053][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:45.054][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:45.054][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:45.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:45.056][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:45.057][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:45.057][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:45.058][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:45.059][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:45.060][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:45.061][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:45.061][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:45.062][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:45.063][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:45.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:45.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:45.065][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:45.066][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:45.067][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:45.067][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:45.068][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:45.069][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:45.069][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:45.070][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:45.071][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:45.072][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:45.072][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:45.073][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:45.074][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:45.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:45.075][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:45.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:45.077][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:45.078][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:45.078][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:45.079][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:45.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:45.080][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:45.081][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:45.082][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-15 16:01:45.083][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:45.083][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:45.084][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:45.085][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:45.085][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:45.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:45.088][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/definitions.yml".
biodb.DEBUG[2025-03-15 16:01:45.097][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2025-03-15 16:01:45.098][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-15 16:01:45.099][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-03-15 16:01:45.100][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-15 16:01:45.101][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-15 16:01:45.102][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-15 16:01:45.103][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-15 16:01:45.103][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-03-15 16:01:45.104][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2025-03-15 16:01:45.105][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-03-15 16:01:45.106][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-15 16:01:45.107][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-15 16:01:45.108][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2025-03-15 16:01:45.109][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-15 16:01:45.109][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2025-03-15 16:01:45.109][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2025-03-15 16:01:45.109][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2025-03-15 16:01:45.109][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2025-03-15 16:01:45.109][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2025-03-15 16:01:45.109][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2025-03-15 16:01:45.109][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2025-03-15 16:01:45.109][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2025-03-15 16:01:45.109][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2025-03-15 16:01:45.109][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2025-03-15 16:01:45.109][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2025-03-15 16:01:45.111][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-03-15 16:01:45.111][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-15 16:01:45.111][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-15 16:01:45.111][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-15 16:01:45.112][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-03-15 16:01:45.113][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:01:45.114][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:01:45.115][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-15 16:01:45.115][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-15 16:01:45.116][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-15 16:01:45.117][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-15 16:01:45.118][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:01:45.118][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2025-03-15 16:01:45.119][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-15 16:01:45.119][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-15 16:01:45.120][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-03-15 16:01:45.121][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2025-03-15 16:01:45.121][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2025-03-15 16:01:45.126][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-03-15 16:01:45.127][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-15 16:01:45.128][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2025-03-15 16:01:45.129][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-03-15 16:01:45.130][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-03-15 16:01:45.132][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-03-15 16:01:45.150][super$initialize] Initialize connector chebi.
biodb.DEBUG[2025-03-15 16:01:45.152][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2025-03-15 16:01:45.155][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2025-03-15 16:01:45.158][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2025-03-15 16:01:45.161][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-15 16:01:45.189][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-15 16:01:45.190][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2025-03-15 16:01:45.191][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2025-03-15 16:01:45.198][biodb::testThat]
biodb.INFO [2025-03-15 16:01:45.199][biodb::testThat] Running test function test.entry.fields (" Entry fields have a correct value ").
biodb.INFO [2025-03-15 16:01:45.200][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-15 16:01:45.201][biodb::testThat]
biodb.TRACE[2025-03-15 16:01:45.204][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2025-03-15 16:01:45.205][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:01:45.207][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:01:45.213][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:01:45.214][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:45.215][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:45.227][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:45.228][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:45.229][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:45.230][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:01:45.237][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:45.238][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:45.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.239][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:45.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:45.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.254][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:01:45.255][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:01:45.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.256][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.278][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:01:45.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:01:45.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.282][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:01:45.283][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:01:45.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.285][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.286][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:01:45.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:01:45.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.289][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:01:45.290][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:01:45.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.292][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.293][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:01:45.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:01:45.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.296][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:01:45.297][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:01:45.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.298][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.299][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:01:45.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:01:45.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.303][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:45.304][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:45.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.305][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.306][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:45.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:45.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.309][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:01:45.310][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:45.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.312][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.313][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:01:45.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:45.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.317][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:45.317][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:45.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.319][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.320][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:45.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:45.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.323][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:01:45.324][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:01:45.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.326][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.327][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:01:45.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:01:45.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.337][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:01:45.338][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:01:45.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.339][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.340][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:01:45.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:01:45.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.344][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:01:45.345][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:01:45.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.346][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.347][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:01:45.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:01:45.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.351][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:01:45.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:01:45.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.354][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:01:45.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:01:45.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:45.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:45.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.361][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:01:45.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:01:45.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:45.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:45.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.367][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:45.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:45.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.371][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:45.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:45.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:45.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:45.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:45.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:45.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:45.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:45.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:01:45.410][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2025-03-15 16:01:45.413][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:01:45.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:01:45.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.416][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:01:45.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:01:45.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.437][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:01:45.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:01:45.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.445][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:01:45.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:01:45.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.448][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:45.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:45.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.451][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:45.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:45.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.454][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-15 16:01:45.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-15 16:01:45.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.458][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-15 16:01:45.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-15 16:01:45.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.461][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-03-15 16:01:45.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-03-15 16:01:45.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.464][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-03-15 16:01:45.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-03-15 16:01:45.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:45.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:45.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.495][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:01:45.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:01:45.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:45.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:45.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:45.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:45.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.510][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:45.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:45.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:45.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:45.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:45.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:45.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:45.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:45.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.524][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:01:45.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:01:45.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.528][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:01:45.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:01:45.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.531][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:01:45.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:01:45.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:45.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:45.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:45.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:45.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:45.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:45.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.551][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:45.552][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:45.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.554][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:45.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:45.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.565][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:01:45.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:01:45.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.568][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:01:45.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:01:45.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.571][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:01:45.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:01:45.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.579][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:01:45.580][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:01:45.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.581][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.582][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:01:45.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:01:45.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.593][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:01:45.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:01:45.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.596][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:01:45.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:01:45.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.599][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:01:45.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:01:45.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.603][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:01:45.604][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:01:45.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.606][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.606][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:01:45.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:01:45.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.617][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:01:45.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:01:45.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.620][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:01:45.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:01:45.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.623][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:01:45.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:01:45.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.627][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:01:45.627][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:01:45.628][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.629][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.630][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:01:45.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:01:45.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.639][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:45.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:45.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.643][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:45.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:45.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.646][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:45.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:45.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.649][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:45.650][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:45.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.651][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.652][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:45.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:45.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.662][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:45.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:45.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.665][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:45.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:45.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.668][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:45.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:45.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.672][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:45.673][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:45.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.674][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.675][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:45.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:45.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.685][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:01:45.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:01:45.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.688][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:01:45.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:01:45.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.692][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:01:45.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:01:45.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.695][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:01:45.695][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:01:45.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.697][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.698][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:01:45.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:01:45.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.712][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:01:45.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:01:45.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.716][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:01:45.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:01:45.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.719][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:01:45.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:01:45.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.722][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:01:45.723][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:01:45.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.725][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.726][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:01:45.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:01:45.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.736][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:45.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:45.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.740][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:45.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:45.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.743][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:45.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:45.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.747][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:45.748][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:45.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.749][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.750][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:45.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:45.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.760][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:01:45.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:01:45.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.764][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:01:45.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:01:45.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.767][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:01:45.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:01:45.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.770][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:01:45.771][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:01:45.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.773][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.773][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:01:45.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:01:45.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.784][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:01:45.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:01:45.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.788][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:01:45.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:01:45.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.791][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:01:45.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:01:45.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.794][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:01:45.795][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:01:45.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.797][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.797][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:01:45.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:01:45.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.808][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:01:45.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:01:45.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.811][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:01:45.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:01:45.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.814][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:01:45.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:01:45.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.817][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:01:45.818][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:01:45.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.820][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.821][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:01:45.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:01:45.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.835][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:45.836][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:45.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.837][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.842][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:01:45.843][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:01:45.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.844][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.849][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:01:45.850][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:01:45.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.851][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.855][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:01:45.856][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:01:45.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.858][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.862][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:01:45.863][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:01:45.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.865][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.869][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:45.870][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:45.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.871][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.876][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:45.877][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:45.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.879][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.883][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:45.884][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:45.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.886][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.890][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:01:45.891][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:01:45.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.893][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.897][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:01:45.898][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:01:45.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.900][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.904][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:01:45.905][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:01:45.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.907][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.922][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-2528-content.xml".
biodb.DEBUG[2025-03-15 16:01:45.954][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:01:45.955][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:01:45.957][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:01:45.957][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:45.958][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:45.963][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:45.963][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:45.964][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:45.965][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:01:45.967][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:45.968][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:45.969][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.970][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:45.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:45.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.988][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:01:45.989][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:01:45.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.991][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.992][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:01:45.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:01:45.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.995][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:01:45.996][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:01:45.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:45.997][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:45.999][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:01:46.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:01:46.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.002][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:01:46.003][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:01:46.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.005][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.006][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:01:46.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:01:46.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.009][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:01:46.010][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:01:46.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.011][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.012][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:01:46.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:01:46.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.016][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:46.016][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:46.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.018][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.019][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:46.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:46.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.022][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:01:46.023][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:46.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.025][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.026][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:01:46.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:46.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.029][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:46.030][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:46.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.032][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.033][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:46.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:46.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.036][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:01:46.037][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:01:46.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.038][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.040][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:01:46.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:01:46.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.043][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:01:46.044][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:01:46.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.045][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.046][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:01:46.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:01:46.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.049][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:01:46.050][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:01:46.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.052][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.053][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:01:46.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:01:46.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.056][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:01:46.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:01:46.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.060][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:01:46.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:01:46.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:46.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:46.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.066][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:01:46.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:01:46.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.073][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:46.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:46.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:46.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:46.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:46.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:46.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:46.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:46.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:46.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:46.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.090][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:46.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:46.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:01:46.093][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2528.
biodb.TRACE[2025-03-15 16:01:46.110][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:01:46.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:01:46.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.113][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:01:46.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:01:46.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.117][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:01:46.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:01:46.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.120][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:01:46.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:01:46.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.123][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:46.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:46.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.126][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:46.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:46.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.130][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-15 16:01:46.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-15 16:01:46.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.133][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-15 16:01:46.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-15 16:01:46.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.136][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-03-15 16:01:46.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-03-15 16:01:46.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.139][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-03-15 16:01:46.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-03-15 16:01:46.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:46.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:46.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.151][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:01:46.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:01:46.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:46.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:46.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:46.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:46.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:46.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:46.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:46.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:46.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:46.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:46.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:46.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:46.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.180][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:01:46.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:01:46.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:01:46.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:01:46.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.186][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:01:46.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:01:46.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:46.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:46.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:46.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:46.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:46.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:46.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.218][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:46.218][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:46.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.220][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:46.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:46.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.231][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:01:46.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:01:46.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.235][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:01:46.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:01:46.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.238][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:01:46.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:01:46.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.241][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:01:46.242][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:01:46.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.244][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.244][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:01:46.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:01:46.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.255][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:01:46.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:01:46.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.259][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:01:46.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:01:46.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.262][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:01:46.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:01:46.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.265][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:01:46.266][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:01:46.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.268][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.268][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:01:46.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:01:46.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.279][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:01:46.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:01:46.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.283][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:01:46.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:01:46.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.286][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:01:46.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:01:46.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.289][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:01:46.290][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:01:46.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.292][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.293][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:01:46.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:01:46.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.303][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:01:46.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:46.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.306][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:46.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:46.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.310][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:46.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:46.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.313][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:01:46.314][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:46.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.320][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.321][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:01:46.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:46.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.331][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:46.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:46.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.335][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:46.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:46.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.338][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:46.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:46.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.341][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:46.342][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:46.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.343][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.344][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:46.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:46.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.355][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:46.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:46.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.358][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:46.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:46.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.361][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:46.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:46.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.364][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:46.365][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:46.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.367][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.368][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:46.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:46.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.378][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:01:46.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:01:46.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.381][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:01:46.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:01:46.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.385][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:01:46.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:01:46.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.388][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:01:46.389][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:01:46.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.391][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.391][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:01:46.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:01:46.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.402][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:01:46.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:01:46.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.405][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:01:46.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:01:46.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.408][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:01:46.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:01:46.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.411][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:01:46.412][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:01:46.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.414][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.415][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:01:46.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:01:46.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.425][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:46.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:46.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.428][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:46.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:46.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.431][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:46.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:46.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.434][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:46.435][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:46.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.436][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.437][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:46.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:46.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.451][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:01:46.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:01:46.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.454][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:01:46.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:01:46.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.458][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:01:46.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:01:46.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.461][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:01:46.462][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:01:46.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.463][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.464][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:01:46.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:01:46.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.475][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:01:46.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:01:46.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.478][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:01:46.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:01:46.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.482][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:01:46.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:01:46.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.485][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:01:46.486][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:01:46.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.487][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.488][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:01:46.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:01:46.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.498][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:01:46.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:01:46.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.502][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:01:46.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:01:46.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.505][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:01:46.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:01:46.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.509][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:01:46.509][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:01:46.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.511][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.512][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:01:46.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:01:46.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.522][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:46.523][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:46.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.525][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.529][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:01:46.530][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:01:46.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.531][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.536][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:01:46.537][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:01:46.537][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.538][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.543][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:01:46.543][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:01:46.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.545][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.549][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:01:46.550][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:01:46.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.552][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.556][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:46.557][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:46.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.559][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.563][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:46.564][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:46.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.565][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.569][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:46.570][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:46.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.572][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.580][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:01:46.581][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:01:46.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.583][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.587][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:01:46.588][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:01:46.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.589][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.593][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:01:46.594][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:01:46.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.596][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.600][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-7799-content.xml".
biodb.DEBUG[2025-03-15 16:01:46.601][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:01:46.602][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:01:46.604][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:01:46.604][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:46.605][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:46.609][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:46.610][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:46.611][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:46.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:01:46.614][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:46.614][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:46.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.616][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:46.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:46.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.620][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:01:46.621][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:01:46.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.623][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.624][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:01:46.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:01:46.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.627][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:01:46.628][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:01:46.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.630][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.631][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:01:46.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:01:46.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.634][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:01:46.635][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:01:46.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.636][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.637][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:01:46.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:01:46.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.641][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:01:46.641][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:01:46.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.643][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.644][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:01:46.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:01:46.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.647][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:46.648][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:46.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.650][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.651][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:46.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:46.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.654][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:01:46.655][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:46.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.657][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.658][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:01:46.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:46.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.661][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:46.662][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:46.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.663][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.664][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:46.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:46.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.668][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:01:46.669][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:01:46.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.670][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.672][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:01:46.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:01:46.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.675][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:01:46.676][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:01:46.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.677][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.678][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:01:46.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:01:46.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.681][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:01:46.682][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:01:46.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.684][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.685][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:01:46.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:01:46.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.688][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:01:46.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:01:46.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.691][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:01:46.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:01:46.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:46.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:46.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.697][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:01:46.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:01:46.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:46.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:46.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:46.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:46.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:46.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:46.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:46.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:46.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:46.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:46.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:46.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:46.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:01:46.724][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 7799.
biodb.TRACE[2025-03-15 16:01:46.726][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:01:46.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:01:46.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.729][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:01:46.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:01:46.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.732][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:01:46.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:01:46.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.736][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:01:46.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:01:46.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.739][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:46.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:46.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.742][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:46.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:46.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.745][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-15 16:01:46.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-15 16:01:46.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.748][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-15 16:01:46.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-15 16:01:46.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.751][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-03-15 16:01:46.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-03-15 16:01:46.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.754][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-03-15 16:01:46.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-03-15 16:01:46.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:46.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:46.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.765][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:01:46.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:01:46.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:46.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:46.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:46.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:46.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:46.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:46.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:46.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:46.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:46.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:46.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:46.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:46.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:01:46.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:01:46.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.796][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:01:46.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:01:46.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.800][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:01:46.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:01:46.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:46.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:46.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.812][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:46.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:46.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:46.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:46.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.818][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:46.819][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:46.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.824][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:46.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:46.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.835][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:01:46.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:01:46.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.838][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:01:46.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:01:46.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.841][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:01:46.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:01:46.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.845][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:01:46.846][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:01:46.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.847][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.848][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:01:46.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:01:46.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.859][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:01:46.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:01:46.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.862][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:01:46.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:01:46.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.866][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:01:46.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:01:46.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.869][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:01:46.870][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:01:46.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.871][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.872][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:01:46.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:01:46.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.883][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:01:46.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:01:46.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.886][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:01:46.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:01:46.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.889][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:01:46.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:01:46.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.893][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:01:46.893][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:01:46.894][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.895][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.895][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:01:46.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:01:46.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.906][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:46.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:46.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.909][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:46.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:46.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.913][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:46.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:46.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.916][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:46.917][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:46.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.918][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.919][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:46.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:46.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.929][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:46.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:46.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.932][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:46.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:46.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.935][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:46.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:46.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.938][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:46.939][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:46.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.940][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.941][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:46.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:46.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.956][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:46.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:46.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.960][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:46.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:46.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.963][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:46.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:46.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.967][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:46.967][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:46.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.969][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.970][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:46.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:46.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.980][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:01:46.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:01:46.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.984][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:01:46.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:01:46.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.987][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:01:46.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:01:46.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.991][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:01:46.991][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:01:46.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.993][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:46.994][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:01:46.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:01:46.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:46.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:47.004][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:01:47.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:01:47.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:47.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:47.007][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:01:47.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:01:47.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:47.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:47.010][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:01:47.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:01:47.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:47.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:47.013][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:01:47.014][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:01:47.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:47.015][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:47.016][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:01:47.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:01:47.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:47.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:47.026][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:01:47.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:01:47.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:47.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:47.030][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:01:47.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:01:47.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:47.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:47.032][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:01:47.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:01:47.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:47.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:47.036][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:01:47.037][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:01:47.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:47.038][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:47.039][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:01:47.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:01:47.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:47.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:47.049][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:01:47.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:01:47.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:47.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:47.052][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:01:47.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:01:47.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:47.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:47.056][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:01:47.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:01:47.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:47.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:47.058][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:01:47.059][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:01:47.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:47.061][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:47.061][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:01:47.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:01:47.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:47.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:47.076][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:47.077][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:47.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:47.078][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:47.083][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:01:47.084][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:01:47.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:47.085][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:47.090][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:01:47.090][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:01:47.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:47.092][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:47.096][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:01:47.097][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:01:47.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:47.099][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:47.103][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:01:47.104][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:01:47.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:47.105][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:47.110][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:47.111][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:47.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:47.112][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:47.117][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:47.117][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:47.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:47.119][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:47.124][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:47.124][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:47.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:47.126][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:47.130][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:01:47.131][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:01:47.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:47.133][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:47.137][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:01:47.138][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:01:47.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:47.139][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:47.144][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:01:47.145][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:01:47.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:47.146][ef$get] fields variable is a list.
biodb.INFO [2025-03-15 16:01:47.153][biodb::testThat]
biodb.INFO [2025-03-15 16:01:47.154][biodb::testThat] Running test function test.rt.unit (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-03-15 16:01:47.155][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-15 16:01:47.156][biodb::testThat]
biodb.DEBUG[2025-03-15 16:01:47.157][private$loadEntries] Creating entries from ids [3]: "15440, 2528, 7799".
biodb.DEBUG[2025-03-15 16:01:47.163][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
biodb.TRACE[2025-03-15 16:01:47.169][cch$loadFileContent] Trying to load 3 files from cache: [3]: "15440, 2528, 7799".
biodb.TRACE[2025-03-15 16:01:47.171][cch$loadFileContent] file.exist = [3]: "FALSE, TRUE, TRUE".
biodb.TRACE[2025-03-15 16:01:47.173][loadFileContents] Loaded 2 files from cache: [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml".
biodb.DEBUG[2025-03-15 16:01:47.174][conn$getEntryContent] 2 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:01:47.175][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:01:47.176][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:01:47.176][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:01:47.180][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:01:47.181][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:47.181][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:47.186][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:47.187][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:47.188][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:47.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:47.189][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
biodb.DEBUG[2025-03-15 16:01:47.211][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:01:47.211][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:01:47.212][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
biodb.TRACE[2025-03-15 16:01:48.197][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
biodb.DEBUG[2025-03-15 16:01:48.726][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:01:48.728][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5c6fb88c946e8568cc03c0d73dc5603e.content"
biodb.TRACE[2025-03-15 16:01:48.750][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5c6fb88c946e8568cc03c0d73dc5603e.request"
biodb.TRACE[2025-03-15 16:01:48.753][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml"
biodb.DEBUG[2025-03-15 16:01:48.754][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:01:48.755][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2025-03-15 16:01:48.756][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2025-03-15 16:01:48.757][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:01:48.757][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:48.758][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:48.763][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:48.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:48.764][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:48.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:01:48.767][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:48.768][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:48.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:48.769][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:48.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:48.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:48.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:48.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:48.774][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:01:48.775][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:01:48.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:48.776][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:48.777][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:01:48.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:01:48.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:48.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:48.781][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:01:48.782][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:01:48.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:48.783][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:48.784][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:01:48.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:01:48.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:48.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:48.787][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:01:48.788][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:01:48.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:48.790][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:48.791][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:01:48.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:01:48.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:48.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:48.794][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:01:48.795][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:01:48.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:48.797][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:48.798][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:01:48.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:01:48.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:48.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:48.801][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:48.802][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:48.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:48.804][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:48.805][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:48.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:48.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:48.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:48.808][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:01:48.809][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:48.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:48.811][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:48.811][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:01:48.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:48.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:48.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:48.815][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:48.815][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:48.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:48.817][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:48.818][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:48.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:48.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:48.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:48.821][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:01:48.822][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:01:48.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:48.823][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:48.824][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:01:48.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:01:48.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:48.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:48.828][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:01:48.829][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:01:48.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:48.830][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:48.831][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:01:48.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:01:48.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:48.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:48.834][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:01:48.835][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:01:48.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:48.837][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:48.842][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:01:48.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:01:48.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:48.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:48.845][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:01:48.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:01:48.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:48.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:48.848][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:01:48.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:01:48.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:48.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:48.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:48.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:48.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:48.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:48.854][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:01:48.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:01:48.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:48.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:48.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:48.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:48.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:48.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:48.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:48.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:48.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:48.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:48.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:48.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:48.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:48.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:01:48.867][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:01:48.868][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:48.869][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:48.873][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:48.874][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:48.875][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:48.875][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:01:48.877][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:48.878][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:48.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:48.880][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:48.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:48.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:48.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:48.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:48.884][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:01:48.885][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:01:48.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:48.886][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:48.887][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:01:48.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:01:48.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:48.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:48.890][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:01:48.891][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:01:48.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:48.893][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:48.894][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:01:48.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:01:48.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:48.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:48.897][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:01:48.898][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:01:48.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:48.899][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:48.900][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:01:48.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:01:48.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:48.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:48.904][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:01:48.905][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:01:48.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:48.906][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:48.907][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:01:48.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:01:48.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:48.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:48.910][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:48.911][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:48.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:48.912][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:48.913][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:48.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:48.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:48.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:48.917][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:01:48.917][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:48.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:48.919][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:48.920][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:01:48.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:48.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:48.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:48.923][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:48.924][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:48.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:48.925][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:48.926][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:48.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:48.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:48.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:48.934][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:01:48.934][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:01:48.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:48.936][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:48.937][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:01:48.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:01:48.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:48.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:48.940][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:01:48.941][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:01:48.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:48.943][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:48.944][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:01:48.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:01:48.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:48.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:48.947][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:01:48.948][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:01:48.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:48.949][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:48.950][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:01:48.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:01:48.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:48.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:48.954][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:01:48.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:01:48.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:48.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:48.957][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:01:48.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:01:48.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:48.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:48.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:48.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:48.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:48.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:48.964][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:01:48.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:01:48.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:48.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:48.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:48.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:48.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:48.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:48.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:48.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:48.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:48.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:48.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:48.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:48.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:48.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:01:48.977][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:01:48.978][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:48.978][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:48.983][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:48.984][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:48.984][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:48.985][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:01:48.987][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:48.988][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:48.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:48.989][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:48.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:48.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:48.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:48.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:48.994][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:01:48.995][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:01:48.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:48.996][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:48.998][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:01:48.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:01:48.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:49.001][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:01:49.002][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:01:49.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.003][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:49.004][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:01:49.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:01:49.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:49.008][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:01:49.008][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:01:49.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.010][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:49.011][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:01:49.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:01:49.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:49.014][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:01:49.014][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:01:49.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.016][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:49.017][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:01:49.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:01:49.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:49.020][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:49.025][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:49.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.026][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:49.027][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:49.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:49.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:49.030][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:01:49.031][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:49.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.033][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:49.034][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:01:49.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:49.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:49.037][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:49.038][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:49.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.039][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:49.040][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:49.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:49.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:49.044][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:01:49.045][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:01:49.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.046][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:49.047][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:01:49.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:01:49.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:49.051][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:01:49.051][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:01:49.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.053][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:49.054][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:01:49.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:01:49.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:49.057][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:01:49.058][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:01:49.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.060][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:49.061][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:01:49.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:01:49.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:49.064][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:01:49.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:01:49.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:49.067][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:01:49.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:01:49.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:49.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:49.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:49.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:49.073][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:01:49.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:01:49.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:49.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:49.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:49.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:49.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:49.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:49.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:49.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:49.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:49.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:49.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:49.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:49.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:49.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:49.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:49.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:49.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:49.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:49.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:49.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:49.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:49.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:49.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:49.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:49.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:49.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:49.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:49.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:49.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:49.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:49.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:49.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:49.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:49.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:49.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:49.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:49.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:01:49.136][self$createEntryFromContent] Accession numbers: 15440, 2528, 7799.
biodb.TRACE[2025-03-15 16:01:49.137][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-03-15 16:01:49.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-03-15 16:01:49.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:49.140][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-03-15 16:01:49.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-03-15 16:01:49.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:49.143][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-03-15 16:01:49.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-03-15 16:01:49.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:49.151][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-03-15 16:01:49.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-03-15 16:01:49.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:49.154][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-03-15 16:01:49.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-03-15 16:01:49.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:49.157][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-03-15 16:01:49.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-03-15 16:01:49.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:49.164][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-03-15 16:01:49.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-03-15 16:01:49.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:49.167][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-03-15 16:01:49.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-03-15 16:01:49.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:49.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-03-15 16:01:49.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-03-15 16:01:49.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-15 16:01:49.180][biodb::testThat]
biodb.INFO [2025-03-15 16:01:49.181][biodb::testThat] Running test function test.searchForEntries (" We can search for an entry by searchable field ").
biodb.INFO [2025-03-15 16:01:49.182][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-15 16:01:49.183][biodb::testThat]
biodb.TRACE[2025-03-15 16:01:49.186][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:01:49.186][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:01:49.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.188][ef$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:01:49.189][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.TRACE[2025-03-15 16:01:49.212][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:01:49.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:01:49.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:49.215][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:01:49.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:01:49.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:49.218][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:01:49.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:01:49.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:01:49.224][function(conn, opt)] With value "squalene".
biodb.DEBUG[2025-03-15 16:01:49.245][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2025-03-15 16:01:49.248][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:01:49.259][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2025-03-15 16:01:49.261][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:01:49.262][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2025-03-15 16:01:49.265][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:01:49.267][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:01:49.268][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-03-15 16:01:49.270][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:01:49.271][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-03-15 16:01:49.272][function(conn, opt)] With found IDs [1]: "15440".
biodb.TRACE[2025-03-15 16:01:49.284][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:49.285][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:49.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.287][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:49.287][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:49.288][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:49.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.290][ef$get] fields variable is a list.
biodb.INFO [2025-03-15 16:01:49.294][biodb::testThat]
biodb.INFO [2025-03-15 16:01:49.295][biodb::testThat] Running test function test.searchByName (" We can search for an entry by name. ").
biodb.INFO [2025-03-15 16:01:49.295][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-15 16:01:49.296][biodb::testThat]
biodb.TRACE[2025-03-15 16:01:49.321][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:01:49.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:01:49.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:49.324][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:01:49.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:01:49.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:49.328][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:01:49.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:01:49.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:01:49.373][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:01:49.376][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:01:49.377][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-03-15 16:01:49.378][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:01:49.379][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.INFO [2025-03-15 16:01:49.395][biodb::testThat]
biodb.INFO [2025-03-15 16:01:49.396][biodb::testThat] Running test function testEntryLoading (" We can load an entry from the database. ").
biodb.INFO [2025-03-15 16:01:49.396][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-15 16:01:49.397][biodb::testThat]
biodb.TRACE[2025-03-15 16:01:49.411][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:01:49.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:01:49.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:49.415][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:01:49.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:01:49.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:49.418][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:01:49.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:01:49.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:49.421][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:01:49.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:01:49.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:49.424][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:49.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:49.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:49.427][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:49.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:49.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:49.431][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-15 16:01:49.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-15 16:01:49.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:49.434][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-15 16:01:49.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-15 16:01:49.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:49.437][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-03-15 16:01:49.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-03-15 16:01:49.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:49.441][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-03-15 16:01:49.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-03-15 16:01:49.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:49.451][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:01:49.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:01:49.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:49.455][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:01:49.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:01:49.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:49.458][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:01:49.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:01:49.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:49.461][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:01:49.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:01:49.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:49.464][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:49.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:49.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:49.467][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:49.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:49.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:49.471][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-15 16:01:49.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-15 16:01:49.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:49.474][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-15 16:01:49.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-15 16:01:49.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:49.477][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-03-15 16:01:49.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-03-15 16:01:49.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:49.481][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-03-15 16:01:49.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-03-15 16:01:49.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:49.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-15 16:01:49.489][biodb::testThat]
biodb.INFO [2025-03-15 16:01:49.490][biodb::testThat] Running test function test.entry.page.url (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-03-15 16:01:49.491][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-15 16:01:49.496][biodb::testThat]
biodb.INFO [2025-03-15 16:01:49.505][biodb::testThat]
biodb.INFO [2025-03-15 16:01:49.505][biodb::testThat] Running test function test.entry.image.url (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-03-15 16:01:49.506][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-15 16:01:49.507][biodb::testThat]
biodb.INFO [2025-03-15 16:01:49.516][biodb::testThat]
biodb.INFO [2025-03-15 16:01:49.517][biodb::testThat] Running test function test.entry.page.url.download (" The entry page URL can be downloaded. ").
biodb.INFO [2025-03-15 16:01:49.517][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-15 16:01:49.518][biodb::testThat]
biodb.DEBUG[2025-03-15 16:01:49.521][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
biodb.DEBUG[2025-03-15 16:01:50.385][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440.
biodb.INFO [2025-03-15 16:01:51.612][biodb::testThat]
biodb.INFO [2025-03-15 16:01:51.613][biodb::testThat] Running test function test.entry.image.url.download (" The entry image URL can be downloaded. ").
biodb.INFO [2025-03-15 16:01:51.614][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-15 16:01:51.614][biodb::testThat]
biodb.DEBUG[2025-03-15 16:01:52.013][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/displayImage.do?defaultImage=true&imageIndex=0&chebiId=15440&dimensions=400.
biodb.TRACE[2025-03-15 16:01:52.415][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:01:52.417][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:01:52.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.418][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.419][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:52.420][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:52.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.422][ef$get] fields variable is a list.
biodb.INFO [2025-03-15 16:01:52.423][biodb::testThat]
biodb.INFO [2025-03-15 16:01:52.424][biodb::testThat] Running test function test.searchCompound (" We can search for a compound ").
biodb.INFO [2025-03-15 16:01:52.425][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-15 16:01:52.426][biodb::testThat]
biodb.TRACE[2025-03-15 16:01:52.436][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:01:52.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:01:52.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.440][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:01:52.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:01:52.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.443][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:01:52.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:01:52.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:01:52.513][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:01:52.516][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:01:52.517][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-03-15 16:01:52.518][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:01:52.519][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-03-15 16:01:52.572][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:01:52.575][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:01:52.576][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-03-15 16:01:52.577][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:01:52.578][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.TRACE[2025-03-15 16:01:52.590][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-15 16:01:52.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-15 16:01:52.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.598][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:52.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:52.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.601][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:52.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:52.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.604][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:52.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:52.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.606][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:52.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:52.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:52.609][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:52.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:52.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:52.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:01:52.618][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:01:52.621][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:01:52.622][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-03-15 16:01:52.623][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:01:52.624][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-03-15 16:01:52.626][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:01:52.627][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:52.627][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:52.636][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:52.637][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:52.638][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:52.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:52.639][private$loadEntries] Creating entries from ids [1]: "192288".
biodb.DEBUG[2025-03-15 16:01:52.672][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:01:52.674][cch$loadFileContent] Trying to load 1 files from cache: [1]: "192288".
biodb.TRACE[2025-03-15 16:01:52.675][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:01:52.676][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:01:52.677][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:01:52.678][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:01:52.678][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:01:52.679][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:01:52.689][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:01:52.690][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:52.691][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:52.699][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:52.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:52.701][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:52.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:52.703][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=192288".
biodb.DEBUG[2025-03-15 16:01:52.714][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:01:52.715][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:01:52.725][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=192288".
biodb.TRACE[2025-03-15 16:01:53.082][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=192288).
biodb.DEBUG[2025-03-15 16:01:53.441][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:01:53.443][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7e76f7a384ab933ed01801c92c3eec77.content"
biodb.TRACE[2025-03-15 16:01:53.446][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7e76f7a384ab933ed01801c92c3eec77.request"
biodb.TRACE[2025-03-15 16:01:53.448][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/192288.xml"
biodb.DEBUG[2025-03-15 16:01:53.449][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:01:53.450][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:01:53.451][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:01:53.453][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:01:53.453][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:53.454][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:53.459][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:53.459][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:53.460][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:53.461][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:01:53.463][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:53.464][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:53.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:53.465][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:53.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:53.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:53.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:53.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:53.469][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:01:53.470][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:01:53.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:53.472][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:53.473][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:01:53.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:01:53.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:53.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:53.476][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:01:53.477][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:01:53.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:53.479][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:53.480][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:01:53.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:01:53.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:53.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:53.490][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:01:53.491][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:01:53.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:53.493][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:53.494][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:01:53.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:01:53.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:53.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:53.497][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:01:53.498][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:01:53.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:53.500][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:53.501][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:01:53.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:01:53.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:53.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:53.504][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:53.505][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:53.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:53.506][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:53.507][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:01:53.508][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:53.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:53.510][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:53.511][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:01:53.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:53.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:53.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:53.515][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:53.516][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:53.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:53.517][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:53.518][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:53.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:53.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:53.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:53.521][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:01:53.522][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:01:53.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:53.524][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:53.525][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:01:53.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:01:53.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:53.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:53.528][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:01:53.529][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:01:53.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:53.531][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:53.532][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:01:53.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:01:53.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:53.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:53.535][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:01:53.536][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:01:53.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:53.537][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:53.538][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:01:53.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:01:53.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:53.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:53.541][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:01:53.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:01:53.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:53.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:53.545][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:01:53.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:01:53.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:53.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:53.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:53.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:53.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:53.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:53.551][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:01:53.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:01:53.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:53.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:53.554][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:53.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:53.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:53.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:53.557][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:53.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:53.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:53.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:53.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:53.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:53.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:53.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:53.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:53.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:53.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:53.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:53.570][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:53.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:53.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:53.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:53.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:53.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:53.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:53.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:01:53.577][self$createEntryFromContent] Accession numbers: 192288.
biodb.TRACE[2025-03-15 16:01:53.584][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:53.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:53.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:53.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:53.587][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:53.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:53.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:53.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:53.590][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:53.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:53.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:53.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:01:53.594][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:01:53.596][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:01:53.597][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-03-15 16:01:53.598][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:01:53.600][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-03-15 16:01:53.612][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:01:53.613][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:53.613][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:53.618][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:53.619][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:53.619][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:53.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:01:53.621][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:53.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:53.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:53.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:53.624][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:53.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:53.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:53.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:53.627][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:53.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:53.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:53.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:01:53.630][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:01:53.631][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:53.632][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:53.636][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:53.637][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:53.638][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:53.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:53.639][private$loadEntries] Creating entries from ids [1]: "209892".
biodb.DEBUG[2025-03-15 16:01:53.640][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:01:53.641][cch$loadFileContent] Trying to load 1 files from cache: [1]: "209892".
biodb.TRACE[2025-03-15 16:01:53.642][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:01:53.647][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:01:53.648][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:01:53.649][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:01:53.650][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:01:53.651][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:01:53.653][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:01:53.654][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:53.654][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:53.659][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:53.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:53.661][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:53.661][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:53.662][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=209892".
biodb.DEBUG[2025-03-15 16:01:53.664][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:01:53.665][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:01:53.666][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=209892".
biodb.TRACE[2025-03-15 16:01:54.318][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=209892).
biodb.DEBUG[2025-03-15 16:01:54.671][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:01:54.673][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7a3362365076d47cdf0955cccdd37bcf.content"
biodb.TRACE[2025-03-15 16:01:54.676][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7a3362365076d47cdf0955cccdd37bcf.request"
biodb.TRACE[2025-03-15 16:01:54.678][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/209892.xml"
biodb.DEBUG[2025-03-15 16:01:54.679][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:01:54.680][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:01:54.681][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:01:54.682][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:01:54.683][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:54.683][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:54.688][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:54.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:54.690][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:54.690][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:01:54.692][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:54.693][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:54.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:54.694][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:54.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:54.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:54.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:54.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:54.699][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:01:54.699][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:01:54.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:54.701][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:54.702][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:01:54.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:01:54.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:54.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:54.705][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:01:54.706][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:01:54.707][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:54.707][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:54.709][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:01:54.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:01:54.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:54.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:54.712][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:01:54.713][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:01:54.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:54.714][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:54.715][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:01:54.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:01:54.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:54.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:54.718][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:01:54.719][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:01:54.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:54.721][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:54.722][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:01:54.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:01:54.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:54.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:54.725][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:54.726][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:54.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:54.727][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:54.728][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:01:54.735][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:54.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:54.737][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:54.738][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:01:54.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:54.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:54.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:54.741][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:54.742][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:54.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:54.743][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:54.744][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:54.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:54.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:54.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:54.747][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:01:54.748][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:01:54.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:54.749][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:54.750][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:01:54.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:01:54.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:54.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:54.753][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:01:54.754][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:01:54.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:54.756][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:54.757][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:01:54.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:01:54.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:54.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:54.760][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:01:54.761][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:01:54.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:54.762][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:54.763][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:01:54.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:01:54.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:54.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:54.766][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:01:54.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:01:54.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:54.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:54.769][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:01:54.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:01:54.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:54.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:54.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:54.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:54.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:54.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:54.775][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:01:54.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:01:54.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:54.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:54.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:54.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:54.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:54.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:54.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:54.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:54.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:54.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:54.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:54.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:54.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:54.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:54.787][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:54.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:54.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:54.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:54.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:54.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:54.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:54.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:54.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:54.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:54.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:54.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:01:54.796][self$createEntryFromContent] Accession numbers: 209892.
biodb.TRACE[2025-03-15 16:01:54.797][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:54.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:54.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:54.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:54.800][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:54.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:54.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:54.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:54.803][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:54.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:54.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:54.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:01:54.827][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:01:54.830][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:01:54.831][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-03-15 16:01:54.832][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:01:54.833][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-03-15 16:01:54.836][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:01:54.836][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:54.837][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:54.841][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:54.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:54.843][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:54.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:01:54.844][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:54.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:54.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:54.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:54.847][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:54.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:54.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:54.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:54.850][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:54.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:54.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:54.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:01:54.853][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:01:54.854][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:54.855][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:54.859][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:54.860][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:54.860][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:54.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:54.862][private$loadEntries] Creating entries from ids [1]: "26747".
biodb.DEBUG[2025-03-15 16:01:54.863][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:01:54.864][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26747".
biodb.TRACE[2025-03-15 16:01:54.865][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:01:54.866][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:01:54.866][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:01:54.867][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:01:54.868][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:01:54.869][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:01:54.871][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:01:54.871][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:54.872][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:54.877][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:54.878][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:54.879][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:54.879][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:54.880][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747".
biodb.DEBUG[2025-03-15 16:01:54.883][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:01:54.883][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:01:54.885][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747".
biodb.TRACE[2025-03-15 16:01:55.279][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747).
biodb.DEBUG[2025-03-15 16:01:55.645][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:01:55.647][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/462a35453014388bd90df1c9e4ade520.content"
biodb.TRACE[2025-03-15 16:01:55.650][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/462a35453014388bd90df1c9e4ade520.request"
biodb.TRACE[2025-03-15 16:01:55.652][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26747.xml"
biodb.DEBUG[2025-03-15 16:01:55.653][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:01:55.662][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:01:55.663][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:01:55.664][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:01:55.664][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:55.665][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:55.670][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:55.670][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:55.671][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:55.672][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:01:55.674][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:55.674][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:55.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:55.676][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:55.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:55.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:55.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:55.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:55.680][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:01:55.681][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:01:55.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:55.682][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:55.683][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:01:55.684][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:01:55.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:55.686][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:55.687][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:01:55.688][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:01:55.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:55.689][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:55.690][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:01:55.691][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:01:55.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:55.692][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:55.693][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:55.694][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:55.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:55.696][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:55.697][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:01:55.697][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:55.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:55.699][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:55.700][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:55.701][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:55.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:55.702][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:55.703][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:01:55.704][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:01:55.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:55.706][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:55.707][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:01:55.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:01:55.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:55.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:55.710][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:01:55.711][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:01:55.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:55.712][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:55.713][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:01:55.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:01:55.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:55.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:55.716][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:01:55.717][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:01:55.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:55.719][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:55.720][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:01:55.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:01:55.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:55.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:55.723][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:01:55.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:01:55.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:55.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:55.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:55.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:55.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:55.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:55.729][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:01:55.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:01:55.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:55.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:55.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:55.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:55.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:55.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:55.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:55.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:55.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:55.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:55.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:55.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:55.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:55.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:55.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:55.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:55.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:55.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:55.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:55.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:55.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:55.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:55.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:55.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:55.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:55.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:01:55.755][self$createEntryFromContent] Accession numbers: 26747.
biodb.TRACE[2025-03-15 16:01:55.756][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:55.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:55.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:55.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:55.759][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:55.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:55.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:55.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:55.762][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:55.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:55.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:55.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:55.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:55.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:55.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:55.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:55.769][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:55.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:55.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:55.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:01:55.772][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:01:55.773][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:55.773][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:55.778][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:55.778][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:55.779][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:55.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:55.781][private$loadEntries] Creating entries from ids [1]: "59285".
biodb.DEBUG[2025-03-15 16:01:55.782][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:01:55.783][cch$loadFileContent] Trying to load 1 files from cache: [1]: "59285".
biodb.TRACE[2025-03-15 16:01:55.784][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:01:55.785][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:01:55.786][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:01:55.787][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:01:55.788][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:01:55.788][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:01:55.791][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:01:55.791][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:55.792][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:55.797][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:55.798][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:55.798][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:55.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:55.800][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285".
biodb.DEBUG[2025-03-15 16:01:55.802][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:01:55.803][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:01:55.804][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285".
biodb.TRACE[2025-03-15 16:01:56.169][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285).
biodb.DEBUG[2025-03-15 16:01:56.550][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:01:56.552][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a390fa120be311b7c431851d8d66d5ac.content"
biodb.TRACE[2025-03-15 16:01:56.555][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a390fa120be311b7c431851d8d66d5ac.request"
biodb.TRACE[2025-03-15 16:01:56.557][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/59285.xml"
biodb.DEBUG[2025-03-15 16:01:56.558][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:01:56.559][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:01:56.560][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:01:56.562][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:01:56.562][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:56.563][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:56.574][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:56.575][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:56.576][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:56.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:01:56.578][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:56.579][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:56.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:56.581][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:56.582][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:56.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:56.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:56.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:56.585][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:01:56.586][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:01:56.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:56.588][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:56.588][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:01:56.589][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:01:56.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:56.591][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:56.592][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:01:56.593][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:01:56.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:56.594][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:56.595][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:01:56.596][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:01:56.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:56.598][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:56.599][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:56.600][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:56.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:56.601][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:56.602][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:01:56.603][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:56.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:56.604][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:56.605][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:56.606][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:56.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:56.608][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:56.608][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:01:56.609][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:01:56.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:56.611][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:56.612][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:01:56.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:01:56.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:56.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:56.615][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:01:56.616][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:01:56.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:56.617][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:56.618][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:01:56.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:01:56.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:56.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:56.621][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:01:56.622][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:01:56.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:56.623][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:56.624][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:01:56.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:01:56.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:56.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:56.627][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:01:56.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:01:56.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:56.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:56.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:56.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:56.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:56.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:56.633][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:01:56.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:01:56.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:56.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:56.636][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:56.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:56.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:56.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:56.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:56.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:56.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:56.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:56.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:56.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:56.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:56.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:56.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:56.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:56.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:56.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:56.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:56.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:56.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:56.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:56.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:56.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:56.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:56.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:01:56.658][self$createEntryFromContent] Accession numbers: 59285.
biodb.TRACE[2025-03-15 16:01:56.659][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:56.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:56.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:56.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:56.662][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:56.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:56.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:56.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:56.666][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:56.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:56.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:56.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:56.669][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:56.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:56.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:56.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:56.672][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:56.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:56.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:56.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:01:56.675][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:01:56.676][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:56.677][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:56.681][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:56.682][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:56.683][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:56.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:56.685][private$loadEntries] Creating entries from ids [1]: "75174".
biodb.DEBUG[2025-03-15 16:01:56.685][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:01:56.687][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75174".
biodb.TRACE[2025-03-15 16:01:56.688][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:01:56.689][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:01:56.689][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:01:56.690][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:01:56.691][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:01:56.692][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:01:56.694][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:01:56.695][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:56.696][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:56.700][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:56.701][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:56.702][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:56.703][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:56.704][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174".
biodb.DEBUG[2025-03-15 16:01:56.706][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:01:56.707][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:01:56.708][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174".
biodb.TRACE[2025-03-15 16:01:57.063][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174).
biodb.DEBUG[2025-03-15 16:01:57.431][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:01:57.433][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/379ec57940c7734782bc4c07c7e15a9b.content"
biodb.TRACE[2025-03-15 16:01:57.436][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/379ec57940c7734782bc4c07c7e15a9b.request"
biodb.TRACE[2025-03-15 16:01:57.438][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75174.xml"
biodb.DEBUG[2025-03-15 16:01:57.439][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:01:57.440][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:01:57.441][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:01:57.442][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:01:57.443][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:57.444][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:57.448][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:57.449][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:57.450][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:57.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:01:57.460][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:57.460][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:57.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:57.462][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:57.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:57.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:57.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:57.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:57.466][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:01:57.467][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:01:57.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:57.468][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:57.469][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:01:57.470][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:01:57.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:57.472][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:57.473][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:01:57.474][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:01:57.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:57.475][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:57.476][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:01:57.477][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:01:57.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:57.479][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:57.479][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:57.480][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:57.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:57.482][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:57.483][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:01:57.483][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:57.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:57.485][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:57.486][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:57.486][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:57.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:57.488][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:57.489][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:01:57.490][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:01:57.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:57.491][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:57.492][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:01:57.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:01:57.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:57.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:57.496][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:01:57.497][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:01:57.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:57.498][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:57.499][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:01:57.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:01:57.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:57.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:57.503][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:01:57.503][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:01:57.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:57.505][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:57.506][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:01:57.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:01:57.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:57.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:57.509][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:01:57.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:01:57.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:57.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:57.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:57.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:57.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:57.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:57.516][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:01:57.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:01:57.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:57.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:57.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:57.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:57.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:57.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:57.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:57.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:57.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:57.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:57.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:57.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:57.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:57.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:57.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:57.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:57.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:57.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:57.532][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:57.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:57.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:57.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:57.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:57.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:57.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:57.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:01:57.543][self$createEntryFromContent] Accession numbers: 75174.
biodb.TRACE[2025-03-15 16:01:57.543][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:57.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:57.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:57.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:57.546][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:57.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:57.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:57.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:57.550][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:57.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:57.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:57.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:57.553][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:57.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:57.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:57.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:57.556][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:57.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:57.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:57.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:01:57.559][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:01:57.560][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:57.561][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:57.566][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:57.566][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:57.567][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:57.568][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:57.569][private$loadEntries] Creating entries from ids [1]: "15441".
biodb.DEBUG[2025-03-15 16:01:57.570][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:01:57.571][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15441".
biodb.TRACE[2025-03-15 16:01:57.572][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:01:57.573][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:01:57.573][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:01:57.574][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:01:57.575][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:01:57.576][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:01:57.578][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:01:57.579][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:57.580][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:57.585][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:57.585][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:57.586][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:57.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:57.588][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441".
biodb.DEBUG[2025-03-15 16:01:57.590][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:01:57.591][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:01:57.592][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441".
biodb.TRACE[2025-03-15 16:01:57.944][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441).
biodb.DEBUG[2025-03-15 16:01:58.340][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:01:58.342][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6d4f93841bd82da498852b3a0a5692d.content"
biodb.TRACE[2025-03-15 16:01:58.345][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6d4f93841bd82da498852b3a0a5692d.request"
biodb.TRACE[2025-03-15 16:01:58.348][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15441.xml"
biodb.DEBUG[2025-03-15 16:01:58.349][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:01:58.350][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:01:58.351][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:01:58.352][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:01:58.353][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:58.354][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:58.359][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:58.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:58.360][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:58.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:01:58.363][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:58.364][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:58.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.373][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:58.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:58.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.377][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:01:58.378][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:01:58.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.380][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.381][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:01:58.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:01:58.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.384][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:01:58.385][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:01:58.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.387][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.388][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:01:58.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:01:58.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.392][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:01:58.393][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:01:58.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.394][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.395][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:01:58.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:01:58.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.399][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:01:58.400][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:01:58.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.401][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.402][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:01:58.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:01:58.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.406][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:58.406][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:58.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.408][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.409][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:58.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:58.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.412][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:01:58.413][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:58.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.415][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.416][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:01:58.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:58.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.419][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:58.420][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:58.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.422][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.423][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:58.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:58.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.426][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:01:58.427][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:01:58.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.428][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.430][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:01:58.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:01:58.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.433][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:01:58.434][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:01:58.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.435][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.436][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:01:58.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:01:58.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.440][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:01:58.441][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:01:58.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.442][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.443][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:01:58.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:01:58.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.446][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:01:58.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:01:58.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.450][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:01:58.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:01:58.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.465][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:58.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:58.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.468][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:01:58.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:01:58.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:58.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:58.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.474][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:58.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:58.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.478][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:58.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:58.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:58.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:58.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:58.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:58.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:58.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:58.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:01:58.491][self$createEntryFromContent] Accession numbers: 15441.
biodb.TRACE[2025-03-15 16:01:58.492][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:58.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:58.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.495][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:58.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:58.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:58.499][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:58.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:58.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:58.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:01:58.502][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:01:58.503][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:58.503][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:58.508][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:58.509][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:58.510][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:58.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:58.512][private$loadEntries] Creating entries from ids [1]: "15442".
biodb.DEBUG[2025-03-15 16:01:58.512][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:01:58.514][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15442".
biodb.TRACE[2025-03-15 16:01:58.515][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:01:58.516][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:01:58.517][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:01:58.518][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:01:58.519][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:01:58.519][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:01:58.522][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:01:58.522][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:58.523][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:58.528][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:58.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:58.530][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:58.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:58.531][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442".
biodb.DEBUG[2025-03-15 16:01:58.534][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:01:58.534][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:01:58.536][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442".
biodb.TRACE[2025-03-15 16:01:58.905][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442).
biodb.DEBUG[2025-03-15 16:01:59.542][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:01:59.544][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4c2c678eeeeb53d29ca6f3663ebee297.content"
biodb.TRACE[2025-03-15 16:01:59.547][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4c2c678eeeeb53d29ca6f3663ebee297.request"
biodb.TRACE[2025-03-15 16:01:59.553][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15442.xml"
biodb.DEBUG[2025-03-15 16:01:59.558][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:01:59.560][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:01:59.561][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:01:59.562][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:01:59.563][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:59.563][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:59.568][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:59.569][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:59.570][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:59.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:01:59.572][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:59.573][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:59.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:59.575][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:59.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:59.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:59.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:59.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:59.579][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:01:59.580][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:01:59.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:59.582][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:59.583][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:01:59.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:01:59.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:59.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:59.586][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:01:59.587][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:01:59.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:59.589][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:59.590][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:01:59.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:01:59.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:59.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:59.593][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:01:59.594][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:01:59.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:59.596][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:59.597][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:01:59.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:01:59.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:59.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:59.600][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:01:59.601][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:01:59.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:59.602][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:59.604][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:01:59.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:01:59.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:59.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:59.607][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:59.608][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:59.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:59.610][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:59.611][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:59.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:01:59.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:59.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:59.614][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:01:59.615][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:59.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:59.616][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:59.617][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:01:59.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:59.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:59.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:59.620][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:59.621][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:59.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:59.623][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:59.624][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:59.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:01:59.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:59.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:59.627][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:01:59.628][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:01:59.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:59.629][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:59.630][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:01:59.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:01:59.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:59.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:59.633][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:01:59.634][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:01:59.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:59.636][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:59.636][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:01:59.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:01:59.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:59.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:59.645][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:01:59.645][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:01:59.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:59.647][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:59.648][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:01:59.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:01:59.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:59.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:59.651][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:01:59.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:01:59.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:59.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:59.654][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:01:59.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:01:59.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:59.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:59.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:59.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:59.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:59.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:59.660][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:01:59.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:01:59.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:59.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:59.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:59.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:59.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:59.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:59.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:59.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:59.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:59.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:59.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:59.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:59.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:59.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:59.672][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:59.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:59.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:59.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:59.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:59.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:59.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:59.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:59.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:01:59.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:01:59.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:59.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:01:59.682][self$createEntryFromContent] Accession numbers: 15442.
biodb.TRACE[2025-03-15 16:01:59.683][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:59.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:59.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:59.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:59.686][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:59.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:59.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:59.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:01:59.689][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:59.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:01:59.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:01:59.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:01:59.692][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:01:59.693][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:59.694][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:59.698][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:59.699][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:59.700][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:59.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:59.701][private$loadEntries] Creating entries from ids [1]: "57310".
biodb.DEBUG[2025-03-15 16:01:59.703][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:01:59.704][cch$loadFileContent] Trying to load 1 files from cache: [1]: "57310".
biodb.TRACE[2025-03-15 16:01:59.705][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:01:59.706][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:01:59.707][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:01:59.708][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:01:59.708][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:01:59.709][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:01:59.711][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:01:59.712][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:01:59.712][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:01:59.717][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:01:59.718][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:01:59.719][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:01:59.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:01:59.725][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310".
biodb.DEBUG[2025-03-15 16:01:59.728][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:01:59.728][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:01:59.729][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310".
biodb.TRACE[2025-03-15 16:02:00.093][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310).
biodb.DEBUG[2025-03-15 16:02:00.715][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:02:00.717][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e616043f98d9256021d0f5715e02d37b.content"
biodb.TRACE[2025-03-15 16:02:00.720][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e616043f98d9256021d0f5715e02d37b.request"
biodb.TRACE[2025-03-15 16:02:00.722][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/57310.xml"
biodb.DEBUG[2025-03-15 16:02:00.723][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:02:00.724][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:02:00.725][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:02:00.726][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:00.727][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:00.727][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:00.732][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:00.733][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:00.734][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:00.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:00.736][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:00.737][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:00.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:00.738][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:00.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:00.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:00.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:00.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:00.742][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:02:00.743][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:02:00.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:00.744][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:00.745][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:02:00.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:02:00.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:00.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:00.749][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:00.749][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:00.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:00.751][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:00.752][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:00.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:00.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:00.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:00.756][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:00.756][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:00.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:00.758][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:00.759][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:00.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:00.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:00.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:00.762][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:00.763][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:00.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:00.764][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:00.765][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:00.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:00.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:00.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:00.769][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:00.769][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:00.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:00.771][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:00.772][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:02:00.773][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:00.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:00.774][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:00.775][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:02:00.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:00.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:00.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:00.779][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:00.780][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:00.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:00.781][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:00.782][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:00.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:00.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:00.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:00.785][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:00.786][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:00.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:00.794][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:00.796][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:00.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:00.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:00.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:00.799][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:02:00.800][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:02:00.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:00.801][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:00.802][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:02:00.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:02:00.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:00.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:00.805][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:02:00.806][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:02:00.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:00.808][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:00.809][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:02:00.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:02:00.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:00.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:00.812][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:00.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:00.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:00.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:00.815][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:00.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:00.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:00.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:00.818][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:00.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:00.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:00.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:00.821][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:00.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:00.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:00.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:00.824][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:00.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:00.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:00.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:00.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:00.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:00.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:00.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:00.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:00.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:00.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:00.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:00.834][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:00.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:00.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:00.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:00.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:00.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:00.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:00.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:00.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:00.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:00.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:00.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:00.843][self$createEntryFromContent] Accession numbers: 57310.
biodb.TRACE[2025-03-15 16:02:00.844][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:00.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:00.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:00.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:00.847][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:00.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:00.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:00.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:00.851][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:00.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:00.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:00.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:00.854][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:00.855][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:00.855][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:00.860][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:00.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:00.861][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:00.862][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:00.863][private$loadEntries] Creating entries from ids [1]: "66216".
biodb.DEBUG[2025-03-15 16:02:00.864][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:02:00.865][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66216".
biodb.TRACE[2025-03-15 16:02:00.866][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:02:00.867][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:02:00.868][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:02:00.869][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:02:00.869][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:02:00.874][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:02:00.877][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:00.877][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:00.878][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:00.883][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:00.883][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:00.884][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:00.885][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:00.886][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216".
biodb.DEBUG[2025-03-15 16:02:00.888][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:02:00.889][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:02:00.890][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216".
biodb.TRACE[2025-03-15 16:02:01.256][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216).
biodb.DEBUG[2025-03-15 16:02:01.624][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:02:01.625][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a59039263bdeb010b063b31b1dcdd109.content"
biodb.TRACE[2025-03-15 16:02:01.628][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a59039263bdeb010b063b31b1dcdd109.request"
biodb.TRACE[2025-03-15 16:02:01.631][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66216.xml"
biodb.DEBUG[2025-03-15 16:02:01.632][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:02:01.633][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:02:01.634][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:02:01.636][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:01.636][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:01.637][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:01.642][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:01.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:01.643][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:01.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:01.646][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:01.647][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:01.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.648][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:01.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:01.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.653][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:02:01.653][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:02:01.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.655][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.656][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:02:01.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:02:01.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.659][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:01.660][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:01.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.662][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.663][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:01.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:01.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.666][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:01.667][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:01.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.669][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.670][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:01.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:01.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.673][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:01.674][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:01.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.675][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.676][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:01.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:01.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.679][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:01.680][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:01.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.681][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.682][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:02:01.683][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:01.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.684][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.685][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:02:01.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:01.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.696][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:01.697][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:01.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.698][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.699][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:01.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:01.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.702][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:01.703][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:01.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.704][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.705][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:01.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:01.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.709][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:02:01.710][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:02:01.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.711][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.712][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:02:01.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:02:01.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.715][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:02:01.716][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:02:01.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.718][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.719][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:02:01.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:02:01.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.722][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:01.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:01.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.726][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:01.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:01.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.729][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:01.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:01.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.732][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:01.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:01.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:01.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:01.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:01.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:01.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:01.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:01.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:01.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:01.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:01.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:01.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:01.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:01.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:01.754][self$createEntryFromContent] Accession numbers: 66216.
biodb.TRACE[2025-03-15 16:02:01.754][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:01.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:01.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.758][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:01.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:01.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:01.761][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:01.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:01.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:01.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:01.764][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:01.765][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:01.765][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:01.774][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:01.775][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:01.776][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:01.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:01.777][private$loadEntries] Creating entries from ids [1]: "70860".
biodb.DEBUG[2025-03-15 16:02:01.778][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:02:01.779][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70860".
biodb.TRACE[2025-03-15 16:02:01.780][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:02:01.781][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:02:01.782][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:02:01.782][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:02:01.783][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:02:01.784][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:02:01.786][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:01.787][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:01.787][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:01.792][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:01.793][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:01.794][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:01.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:01.795][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70860".
biodb.DEBUG[2025-03-15 16:02:01.797][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:02:01.798][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:02:01.799][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70860".
biodb.TRACE[2025-03-15 16:02:02.163][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70860).
biodb.DEBUG[2025-03-15 16:02:02.540][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:02:02.541][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/02f38adb5262f39c1de7b27972a97d3a.content"
biodb.TRACE[2025-03-15 16:02:02.544][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/02f38adb5262f39c1de7b27972a97d3a.request"
biodb.TRACE[2025-03-15 16:02:02.546][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70860.xml"
biodb.DEBUG[2025-03-15 16:02:02.547][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:02:02.548][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:02:02.549][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:02:02.551][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:02.551][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:02.552][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:02.556][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:02.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:02.558][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:02.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:02.560][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:02.561][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:02.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:02.563][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:02.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:02.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:02.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:02.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:02.567][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:02:02.568][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:02:02.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:02.569][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:02.570][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:02:02.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:02:02.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:02.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:02.573][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:02.574][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:02.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:02.575][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:02.576][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:02.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:02.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:02.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:02.580][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:02.581][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:02.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:02.582][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:02.583][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:02.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:02.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:02.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:02.586][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:02.587][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:02.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:02.588][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:02.596][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:02.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:02.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:02.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:02.600][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:02.600][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:02.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:02.602][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:02.603][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:02:02.604][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:02.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:02.605][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:02.606][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:02:02.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:02.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:02.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:02.609][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:02.610][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:02.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:02.612][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:02.613][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:02.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:02.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:02.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:02.616][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:02.616][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:02.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:02.618][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:02.619][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:02.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:02.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:02.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:02.622][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:02:02.622][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:02:02.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:02.624][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:02.625][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:02:02.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:02:02.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:02.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:02.628][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:02:02.629][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:02:02.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:02.630][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:02.631][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:02:02.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:02:02.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:02.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:02.634][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:02.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:02.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:02.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:02.637][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:02.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:02.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:02.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:02.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:02.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:02.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:02.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:02.642][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:02.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:02.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:02.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:02.646][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:02.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:02.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:02.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:02.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:02.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:02.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:02.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:02.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:02.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:02.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:02.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:02.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:02.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:02.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:02.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:02.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:02.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:02.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:02.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:02.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:02.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:02.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:02.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:02.664][self$createEntryFromContent] Accession numbers: 70860.
biodb.TRACE[2025-03-15 16:02:02.665][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:02.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:02.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:02.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:02.673][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:02.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:02.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:02.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:02.676][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:02.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:02.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:02.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:02.679][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:02.680][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:02.681][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:02.686][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:02.687][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:02.687][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:02.688][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:02.689][private$loadEntries] Creating entries from ids [1]: "70861".
biodb.DEBUG[2025-03-15 16:02:02.689][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:02:02.691][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70861".
biodb.TRACE[2025-03-15 16:02:02.692][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:02:02.692][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:02:02.694][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:02:02.694][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:02:02.695][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:02:02.696][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:02:02.698][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:02.699][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:02.699][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:02.704][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:02.705][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:02.705][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:02.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:02.707][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70861".
biodb.DEBUG[2025-03-15 16:02:02.709][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:02:02.710][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:02:02.711][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70861".
biodb.TRACE[2025-03-15 16:02:03.071][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70861).
biodb.DEBUG[2025-03-15 16:02:03.436][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:02:03.437][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2469ce985de4364ded27031736786fb4.content"
biodb.TRACE[2025-03-15 16:02:03.440][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2469ce985de4364ded27031736786fb4.request"
biodb.TRACE[2025-03-15 16:02:03.442][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70861.xml"
biodb.DEBUG[2025-03-15 16:02:03.443][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:02:03.444][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:02:03.445][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:02:03.446][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:03.447][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:03.448][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:03.452][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:03.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:03.454][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:03.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:03.456][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:03.457][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:03.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:03.458][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:03.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:03.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:03.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:03.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:03.462][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:02:03.463][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:02:03.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:03.464][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:03.465][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:02:03.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:02:03.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:03.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:03.468][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:03.469][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:03.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:03.470][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:03.471][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:03.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:03.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:03.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:03.482][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:03.483][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:03.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:03.484][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:03.485][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:03.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:03.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:03.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:03.488][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:03.489][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:03.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:03.491][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:03.492][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:03.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:03.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:03.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:03.495][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:03.496][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:03.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:03.497][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:03.498][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:02:03.499][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:03.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:03.500][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:03.501][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:02:03.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:03.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:03.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:03.504][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:03.505][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:03.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:03.507][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:03.508][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:03.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:03.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:03.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:03.511][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:03.512][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:03.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:03.513][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:03.515][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:03.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:03.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:03.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:03.518][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:02:03.518][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:02:03.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:03.520][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:03.521][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:02:03.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:02:03.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:03.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:03.524][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:02:03.525][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:02:03.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:03.527][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:03.528][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:02:03.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:02:03.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:03.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:03.531][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:03.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:03.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:03.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:03.534][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:03.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:03.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:03.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:03.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:03.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:03.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:03.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:03.540][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:03.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:03.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:03.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:03.543][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:03.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:03.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:03.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:03.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:03.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:03.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:03.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:03.549][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:03.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:03.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:03.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:03.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:03.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:03.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:03.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:03.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:03.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:03.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:03.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:03.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:03.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:03.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:03.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:03.566][self$createEntryFromContent] Accession numbers: 70861.
biodb.TRACE[2025-03-15 16:02:03.566][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:03.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:03.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:03.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:03.570][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:03.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:03.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:03.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:03.573][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:03.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:03.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:03.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:03.575][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:03.576][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:03.577][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:03.582][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:03.582][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:03.583][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:03.584][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:03.585][private$loadEntries] Creating entries from ids [1]: "78662".
biodb.DEBUG[2025-03-15 16:02:03.585][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:02:03.586][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78662".
biodb.TRACE[2025-03-15 16:02:03.587][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:02:03.588][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:02:03.589][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:02:03.590][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:02:03.590][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:02:03.591][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:02:03.593][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:03.594][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:03.595][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:03.599][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:03.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:03.601][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:03.601][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:03.602][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78662".
biodb.DEBUG[2025-03-15 16:02:03.604][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:02:03.605][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:02:03.606][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78662".
biodb.TRACE[2025-03-15 16:02:03.965][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78662).
biodb.DEBUG[2025-03-15 16:02:04.338][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:02:04.339][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2a2164b6127ca54c00efe5984f5864a.content"
biodb.TRACE[2025-03-15 16:02:04.342][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2a2164b6127ca54c00efe5984f5864a.request"
biodb.TRACE[2025-03-15 16:02:04.344][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78662.xml"
biodb.DEBUG[2025-03-15 16:02:04.345][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:02:04.346][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:02:04.347][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:02:04.348][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:04.349][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:04.350][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:04.354][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:04.355][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:04.355][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:04.356][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:04.358][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:04.358][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:04.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.360][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:04.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:04.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.368][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:02:04.371][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:02:04.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.373][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.374][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:02:04.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:02:04.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.377][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:04.377][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:04.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.379][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.380][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:04.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:04.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.383][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:04.383][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:04.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.385][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.386][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:04.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:04.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.389][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:04.389][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:04.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.391][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.392][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:04.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:04.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.395][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:04.395][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:04.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.397][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.398][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:02:04.398][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:04.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.400][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.401][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:02:04.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:04.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.404][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:04.405][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:04.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.406][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.407][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:04.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:04.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.410][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:04.411][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:04.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.413][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.414][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:04.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:04.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.417][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:02:04.418][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:02:04.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.419][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.420][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:02:04.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:02:04.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.424][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:02:04.424][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:02:04.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.426][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.427][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:02:04.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:02:04.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.430][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:04.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:04.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.433][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:04.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:04.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.437][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:04.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:04.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.440][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:04.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:04.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:04.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:04.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:04.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:04.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:04.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:04.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.457][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:04.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:04.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:04.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:04.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:04.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:04.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:04.466][self$createEntryFromContent] Accession numbers: 78662.
biodb.TRACE[2025-03-15 16:02:04.467][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:04.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:04.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.470][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:04.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:04.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:04.473][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:04.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:04.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:04.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:04.476][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:04.477][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:04.477][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:04.482][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:04.483][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:04.483][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:04.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:04.485][private$loadEntries] Creating entries from ids [1]: "85084".
biodb.DEBUG[2025-03-15 16:02:04.486][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:02:04.487][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85084".
biodb.TRACE[2025-03-15 16:02:04.488][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:02:04.489][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:02:04.490][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:02:04.491][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:02:04.491][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:02:04.492][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:02:04.494][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:04.495][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:04.496][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:04.500][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:04.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:04.501][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:04.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:04.503][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85084".
biodb.DEBUG[2025-03-15 16:02:04.505][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:02:04.506][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:02:04.507][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85084".
biodb.TRACE[2025-03-15 16:02:04.865][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85084).
biodb.DEBUG[2025-03-15 16:02:05.225][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:02:05.227][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62216dc29cd0685dbac0a61545bda088.content"
biodb.TRACE[2025-03-15 16:02:05.229][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62216dc29cd0685dbac0a61545bda088.request"
biodb.TRACE[2025-03-15 16:02:05.232][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85084.xml"
biodb.DEBUG[2025-03-15 16:02:05.233][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:02:05.234][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:02:05.235][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:02:05.236][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:05.237][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:05.237][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:05.249][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:05.250][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:05.251][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:05.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:05.253][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:05.254][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:05.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.255][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:05.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:05.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.259][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:02:05.260][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:02:05.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.262][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.262][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:02:05.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:02:05.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.266][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:05.267][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:05.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.268][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.269][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:05.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:05.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.273][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:05.274][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:05.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.275][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.276][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:05.276][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:05.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.278][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.279][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:05.280][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:05.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.281][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.282][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:02:05.283][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:05.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.284][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.285][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:02:05.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:05.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.288][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:05.289][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:05.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.290][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.291][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:05.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:05.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.294][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:05.295][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:05.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.296][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.297][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:05.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:05.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.300][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:02:05.301][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:02:05.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.303][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.304][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:02:05.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:02:05.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.307][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:02:05.308][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:02:05.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.309][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.310][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:05.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:05.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.313][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:05.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:05.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:05.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:05.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.323][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:05.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:05.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:05.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:05.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:05.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:05.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:05.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:05.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:05.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:05.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:05.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:05.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.342][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:05.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:05.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:05.345][self$createEntryFromContent] Accession numbers: 85084.
biodb.TRACE[2025-03-15 16:02:05.346][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:05.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:05.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.349][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:05.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:05.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:05.352][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:05.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:05.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:05.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:05.355][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:05.356][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:05.357][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:05.361][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:05.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:05.363][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:05.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:05.364][private$loadEntries] Creating entries from ids [1]: "85086".
biodb.DEBUG[2025-03-15 16:02:05.365][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:02:05.366][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85086".
biodb.TRACE[2025-03-15 16:02:05.367][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:02:05.368][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:02:05.369][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:02:05.370][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:02:05.371][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:02:05.372][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:02:05.373][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:05.374][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:05.375][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:05.379][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:05.380][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:05.381][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:05.381][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:05.382][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85086".
biodb.DEBUG[2025-03-15 16:02:05.384][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:02:05.385][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:02:05.386][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85086".
biodb.TRACE[2025-03-15 16:02:05.751][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85086).
biodb.DEBUG[2025-03-15 16:02:06.115][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:02:06.117][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf3472363c4a7effe355d93315025f8b.content"
biodb.TRACE[2025-03-15 16:02:06.120][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf3472363c4a7effe355d93315025f8b.request"
biodb.TRACE[2025-03-15 16:02:06.121][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85086.xml"
biodb.DEBUG[2025-03-15 16:02:06.123][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:02:06.124][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:02:06.125][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:02:06.130][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:06.134][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:06.134][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:06.139][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:06.140][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:06.140][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:06.141][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:06.143][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:06.143][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:06.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:06.145][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:06.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:06.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:06.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:06.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:06.149][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:02:06.150][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:02:06.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:06.151][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:06.152][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:02:06.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:02:06.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:06.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:06.156][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:06.157][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:06.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:06.158][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:06.159][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:06.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:06.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:06.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:06.162][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:06.163][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:06.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:06.164][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:06.165][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:06.166][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:06.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:06.167][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:06.168][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:06.169][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:06.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:06.170][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:06.171][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:02:06.172][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:06.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:06.173][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:06.174][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:02:06.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:06.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:06.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:06.177][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:06.178][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:06.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:06.179][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:06.180][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:06.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:06.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:06.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:06.183][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:06.184][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:06.185][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:06.185][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:06.186][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:06.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:06.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:06.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:06.189][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:02:06.190][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:02:06.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:06.192][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:06.193][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:02:06.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:02:06.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:06.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:06.196][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:02:06.196][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:02:06.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:06.198][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:06.199][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:06.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:06.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:06.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:06.202][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:06.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:06.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:06.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:06.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:06.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:06.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:06.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:06.212][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:06.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:06.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:06.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:06.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:06.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:06.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:06.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:06.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:06.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:06.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:06.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:06.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:06.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:06.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:06.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:06.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:06.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:06.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:06.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:06.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:06.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:06.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:06.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:06.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:06.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:06.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:06.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:06.234][self$createEntryFromContent] Accession numbers: 85086.
biodb.TRACE[2025-03-15 16:02:06.234][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:06.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:06.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:06.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:06.237][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:06.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:06.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:06.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:06.240][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:06.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:06.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:06.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:06.243][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:06.244][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:06.244][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:06.249][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:06.249][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:06.250][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:06.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:06.252][private$loadEntries] Creating entries from ids [1]: "88123".
biodb.DEBUG[2025-03-15 16:02:06.253][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:02:06.254][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88123".
biodb.TRACE[2025-03-15 16:02:06.255][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:02:06.255][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:02:06.256][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:02:06.257][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:02:06.258][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:02:06.259][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:02:06.261][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:06.261][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:06.262][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:06.266][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:06.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:06.268][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:06.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:06.269][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88123".
biodb.DEBUG[2025-03-15 16:02:06.272][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:02:06.272][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:02:06.273][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88123".
biodb.TRACE[2025-03-15 16:02:06.644][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88123).
biodb.DEBUG[2025-03-15 16:02:07.014][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:02:07.016][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e37f256f660b350650d4ca45d7cd291.content"
biodb.TRACE[2025-03-15 16:02:07.018][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e37f256f660b350650d4ca45d7cd291.request"
biodb.TRACE[2025-03-15 16:02:07.020][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88123.xml"
biodb.DEBUG[2025-03-15 16:02:07.028][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:02:07.030][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:02:07.031][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:02:07.032][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:07.033][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:07.033][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:07.038][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:07.038][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:07.039][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:07.040][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:07.042][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:07.043][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:07.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:07.044][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:07.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:07.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:07.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:07.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:07.048][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:02:07.049][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:02:07.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:07.050][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:07.051][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:02:07.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:02:07.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:07.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:07.054][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:07.055][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:07.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:07.056][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:07.057][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:07.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:07.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:07.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:07.060][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:07.061][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:07.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:07.063][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:07.064][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:07.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:07.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:07.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:07.067][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:07.068][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:07.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:07.069][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:07.070][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:07.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:07.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:07.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:07.074][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:07.074][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:07.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:07.076][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:07.077][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:02:07.078][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:07.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:07.079][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:07.080][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:02:07.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:07.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:07.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:07.083][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:07.084][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:07.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:07.085][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:07.086][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:07.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:07.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:07.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:07.089][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:07.090][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:07.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:07.091][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:07.092][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:07.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:07.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:07.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:07.096][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:02:07.097][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:02:07.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:07.098][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:07.099][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:02:07.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:02:07.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:07.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:07.107][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:02:07.108][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:02:07.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:07.110][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:07.111][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:02:07.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:02:07.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:07.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:07.114][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:07.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:07.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:07.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:07.117][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:07.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:07.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:07.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:07.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:07.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:07.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:07.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:07.123][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:07.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:07.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:07.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:07.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:07.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:07.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:07.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:07.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:07.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:07.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:07.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:07.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:07.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:07.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:07.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:07.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:07.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:07.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:07.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:07.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:07.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:07.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:07.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:07.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:07.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:07.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:07.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:07.146][self$createEntryFromContent] Accession numbers: 88123.
biodb.TRACE[2025-03-15 16:02:07.147][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:07.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:07.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:07.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:07.149][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:07.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:07.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:07.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:07.153][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:07.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:07.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:07.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:07.156][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:07.157][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:07.157][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:07.162][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:07.163][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:07.163][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:07.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:07.165][private$loadEntries] Creating entries from ids [1]: "134117".
biodb.DEBUG[2025-03-15 16:02:07.165][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:02:07.167][cch$loadFileContent] Trying to load 1 files from cache: [1]: "134117".
biodb.TRACE[2025-03-15 16:02:07.168][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:02:07.169][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:02:07.169][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:02:07.170][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:02:07.171][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:02:07.172][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:02:07.174][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:07.174][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:07.175][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:07.180][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:07.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:07.181][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:07.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:07.187][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=134117".
biodb.DEBUG[2025-03-15 16:02:07.189][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:02:07.190][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:02:07.191][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=134117".
biodb.TRACE[2025-03-15 16:02:07.760][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=134117).
biodb.DEBUG[2025-03-15 16:02:08.121][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:02:08.122][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8f998f0023bf19b8745b926f0b2992d7.content"
biodb.TRACE[2025-03-15 16:02:08.125][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8f998f0023bf19b8745b926f0b2992d7.request"
biodb.TRACE[2025-03-15 16:02:08.128][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/134117.xml"
biodb.DEBUG[2025-03-15 16:02:08.129][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:02:08.130][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:02:08.131][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:02:08.132][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:08.132][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:08.133][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:08.138][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:08.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:08.139][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:08.140][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:08.141][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:08.142][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:08.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:08.143][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:08.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:08.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:08.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:08.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:08.147][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:02:08.148][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:02:08.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:08.150][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:08.151][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:02:08.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:02:08.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:08.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:08.153][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:08.154][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:08.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:08.156][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:08.157][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:08.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:08.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:08.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:08.160][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:08.160][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:08.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:08.162][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:08.163][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:08.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:08.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:08.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:08.166][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:08.166][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:08.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:08.168][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:08.169][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:08.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:08.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:08.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:08.172][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:08.172][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:08.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:08.174][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:08.175][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:02:08.176][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:08.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:08.177][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:08.178][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:02:08.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:08.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:08.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:08.181][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:08.181][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:08.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:08.183][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:08.184][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:08.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:08.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:08.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:08.315][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:08.316][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:08.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:08.318][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:08.319][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:08.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:08.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:08.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:08.321][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:02:08.322][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:02:08.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:08.324][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:08.325][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:02:08.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:02:08.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:08.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:08.327][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:02:08.328][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:02:08.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:08.330][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:08.331][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:02:08.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:02:08.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:08.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:08.333][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:08.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:08.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:08.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:08.336][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:08.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:08.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:08.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:08.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:08.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:08.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:08.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:08.342][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:08.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:08.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:08.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:08.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:08.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:08.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:08.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:08.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:08.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:08.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:08.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:08.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:08.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:08.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:08.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:08.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:08.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:08.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:08.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:08.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:08.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:08.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:08.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:08.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:08.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:08.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:08.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:08.363][self$createEntryFromContent] Accession numbers: 134117.
biodb.TRACE[2025-03-15 16:02:08.364][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:08.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:08.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:08.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:08.367][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:08.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:08.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:08.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:08.370][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:08.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:08.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:08.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:08.373][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:08.374][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:08.374][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:08.379][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:08.380][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:08.380][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:08.381][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:08.382][private$loadEntries] Creating entries from ids [1]: "138307".
biodb.DEBUG[2025-03-15 16:02:08.383][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:02:08.384][cch$loadFileContent] Trying to load 1 files from cache: [1]: "138307".
biodb.TRACE[2025-03-15 16:02:08.385][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:02:08.386][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:02:08.386][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:02:08.387][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:02:08.388][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:02:08.389][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:02:08.391][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:08.391][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:08.392][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:08.396][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:08.397][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:08.398][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:08.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:08.399][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=138307".
biodb.DEBUG[2025-03-15 16:02:08.401][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:02:08.402][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:02:08.403][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=138307".
biodb.TRACE[2025-03-15 16:02:08.815][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=138307).
biodb.DEBUG[2025-03-15 16:02:09.184][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:02:09.186][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a2610bdf009c6327ccf7d519fff16ded.content"
biodb.TRACE[2025-03-15 16:02:09.189][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a2610bdf009c6327ccf7d519fff16ded.request"
biodb.TRACE[2025-03-15 16:02:09.192][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/138307.xml"
biodb.DEBUG[2025-03-15 16:02:09.193][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:02:09.195][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:02:09.196][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:02:09.197][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:09.198][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:09.198][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:09.203][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:09.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:09.205][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:09.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:09.207][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:09.208][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:09.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:09.209][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:09.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:09.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:09.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:09.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:09.214][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:02:09.215][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:02:09.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:09.217][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:09.218][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:02:09.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:02:09.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:09.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:09.221][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:09.222][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:09.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:09.224][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:09.225][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:09.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:09.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:09.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:09.228][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:09.229][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:09.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:09.230][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:09.231][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:09.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:09.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:09.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:09.235][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:09.235][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:09.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:09.237][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:09.238][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:09.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:09.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:09.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:09.241][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:09.242][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:09.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:09.244][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:09.245][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:02:09.246][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:09.247][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:09.247][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:09.248][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:02:09.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:09.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:09.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:09.252][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:09.253][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:09.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:09.254][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:09.255][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:09.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:09.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:09.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:09.258][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:09.259][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:09.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:09.260][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:09.262][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:09.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:09.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:09.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:09.265][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:02:09.266][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:02:09.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:09.267][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:09.268][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:02:09.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:02:09.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:09.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:09.272][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:02:09.273][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:02:09.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:09.274][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:09.275][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:02:09.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:02:09.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:09.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:09.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:09.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:09.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:09.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:09.282][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:09.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:09.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:09.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:09.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:09.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:09.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:09.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:09.288][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:09.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:09.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:09.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:09.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:09.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:09.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:09.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:09.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:09.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:09.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:09.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:09.298][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:09.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:09.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:09.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:09.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:09.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:09.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:09.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:09.304][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:09.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:09.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:09.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:09.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:09.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:09.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:09.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:09.311][self$createEntryFromContent] Accession numbers: 138307.
biodb.TRACE[2025-03-15 16:02:09.312][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:09.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:09.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:09.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:09.315][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:09.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:09.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:09.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:09.318][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:09.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:09.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:09.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:09.321][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:09.322][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:09.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:09.328][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:09.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:09.329][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:09.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:09.331][private$loadEntries] Creating entries from ids [1]: "176803".
biodb.DEBUG[2025-03-15 16:02:09.332][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:02:09.333][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176803".
biodb.TRACE[2025-03-15 16:02:09.334][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:02:09.335][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:02:09.336][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:02:09.337][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:02:09.338][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:02:09.338][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:02:09.341][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:09.341][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:09.342][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:09.347][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:09.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:09.348][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:09.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:09.350][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176803".
biodb.DEBUG[2025-03-15 16:02:09.353][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:02:09.353][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:02:09.355][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176803".
biodb.TRACE[2025-03-15 16:02:09.733][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176803).
biodb.DEBUG[2025-03-15 16:02:10.105][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:02:10.107][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/648921bf283f148f1437569ccee0fc41.content"
biodb.TRACE[2025-03-15 16:02:10.110][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/648921bf283f148f1437569ccee0fc41.request"
biodb.TRACE[2025-03-15 16:02:10.113][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176803.xml"
biodb.DEBUG[2025-03-15 16:02:10.114][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:02:10.115][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:02:10.116][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:02:10.118][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:10.118][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:10.119][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:10.124][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:10.125][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:10.126][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:10.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:10.128][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:10.129][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:10.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.131][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:10.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:10.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.139][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:02:10.145][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:02:10.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.146][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.147][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:02:10.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:02:10.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.151][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:10.151][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:10.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.153][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.153][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:10.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:10.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.157][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:10.157][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:10.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.159][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.160][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:10.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:10.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.163][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:10.164][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:10.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.165][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.166][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:10.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:10.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.169][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:10.170][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:10.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.171][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.172][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:02:10.173][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:10.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.174][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.175][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:02:10.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:10.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.178][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:10.179][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:10.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.181][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.182][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:10.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:10.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.185][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:10.185][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:10.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.187][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.188][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:10.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:10.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.191][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:02:10.192][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:02:10.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.193][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.194][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:02:10.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:02:10.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.197][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:02:10.198][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:02:10.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.199][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.200][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:02:10.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:02:10.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.203][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:10.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:10.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:10.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:10.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:10.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:10.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.212][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:10.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:10.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:10.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:10.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:10.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:10.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:10.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:10.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:10.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:10.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:10.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:10.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:10.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:10.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:10.234][self$createEntryFromContent] Accession numbers: 176803.
biodb.TRACE[2025-03-15 16:02:10.235][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:10.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:10.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.238][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:10.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:10.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:10.241][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:10.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:10.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:10.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:10.244][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:10.244][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:10.245][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:10.250][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:10.250][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:10.251][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:10.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:10.252][private$loadEntries] Creating entries from ids [1]: "176962".
biodb.DEBUG[2025-03-15 16:02:10.253][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:02:10.255][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176962".
biodb.TRACE[2025-03-15 16:02:10.256][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:02:10.257][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:02:10.257][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:02:10.258][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:02:10.259][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:02:10.260][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:02:10.262][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:10.263][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:10.263][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:10.268][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:10.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:10.269][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:10.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:10.271][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176962".
biodb.DEBUG[2025-03-15 16:02:10.273][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:02:10.274][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:02:10.275][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176962".
biodb.TRACE[2025-03-15 16:02:10.664][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176962).
biodb.DEBUG[2025-03-15 16:02:11.026][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:02:11.028][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/881a0b9df4a64ff0258c2dc68959eb26.content"
biodb.TRACE[2025-03-15 16:02:11.031][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/881a0b9df4a64ff0258c2dc68959eb26.request"
biodb.TRACE[2025-03-15 16:02:11.033][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176962.xml"
biodb.DEBUG[2025-03-15 16:02:11.034][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:02:11.035][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:02:11.036][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:02:11.037][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:11.038][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:11.039][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:11.044][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:11.044][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:11.045][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:11.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:11.047][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:11.048][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:11.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.049][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:11.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:11.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.053][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:02:11.054][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:02:11.055][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.056][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.056][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:02:11.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:02:11.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.059][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:11.060][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:11.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.062][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.063][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:11.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:11.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.066][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:11.067][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:11.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.068][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.069][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:11.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:11.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.072][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:11.073][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:11.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.074][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.076][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:11.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:11.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.079][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:11.080][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:11.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.081][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.082][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:02:11.083][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.084][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.085][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:02:11.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.088][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:11.089][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:11.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.091][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.092][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:11.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:11.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.095][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:11.096][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:11.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.097][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.098][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:11.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:11.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.101][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:02:11.102][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:02:11.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.104][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.105][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:02:11.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:02:11.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.108][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:02:11.109][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:02:11.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.110][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.111][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:02:11.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:02:11.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.114][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:11.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:11.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.117][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:11.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:11.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:11.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:11.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.124][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:11.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:11.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:11.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:11.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:11.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:11.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:11.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:11.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:11.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:11.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:11.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:11.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:11.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:11.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:11.145][self$createEntryFromContent] Accession numbers: 176962.
biodb.TRACE[2025-03-15 16:02:11.145][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.148][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.151][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:11.154][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:11.155][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:11.155][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:11.160][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:11.161][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:11.161][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:11.162][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:11.163][private$loadEntries] Creating entries from ids [1]: "198655".
biodb.DEBUG[2025-03-15 16:02:11.164][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:02:11.165][cch$loadFileContent] Trying to load 1 files from cache: [1]: "198655".
biodb.TRACE[2025-03-15 16:02:11.166][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:02:11.167][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/198655.xml".
biodb.DEBUG[2025-03-15 16:02:11.168][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:02:11.169][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:02:11.170][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:02:11.178][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:11.178][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:11.179][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:11.183][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:11.184][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:11.185][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:11.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:11.187][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:11.188][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:11.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.189][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:11.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:11.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.193][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:02:11.194][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:02:11.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.195][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.196][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:02:11.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:02:11.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.199][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:11.200][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:11.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.201][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.202][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:11.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:11.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.205][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:11.206][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:11.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.208][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.208][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:11.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:11.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.212][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:11.212][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:11.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.214][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.215][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:11.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:11.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.218][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:11.219][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:11.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.220][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.221][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:02:11.222][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.223][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.224][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:02:11.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.227][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:11.228][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:11.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.229][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.230][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:11.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:11.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.233][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:11.234][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:11.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.235][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.237][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:11.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:11.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.239][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:02:11.240][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:02:11.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.242][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.243][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:02:11.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:02:11.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.246][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:02:11.247][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:02:11.247][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.248][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.249][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:02:11.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:02:11.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.252][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:11.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:11.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.255][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:11.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:11.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:11.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:11.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.261][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:11.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:11.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:11.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:11.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.267][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:11.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:11.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:11.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:11.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:11.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:11.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:11.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:11.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:11.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:11.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:11.281][self$createEntryFromContent] Accession numbers: 198655.
biodb.TRACE[2025-03-15 16:02:11.282][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.285][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.288][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:11.291][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:11.292][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:11.292][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:11.297][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:11.297][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:11.298][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:11.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:11.300][private$loadEntries] Creating entries from ids [1]: "215045".
biodb.DEBUG[2025-03-15 16:02:11.300][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:02:11.301][cch$loadFileContent] Trying to load 1 files from cache: [1]: "215045".
biodb.TRACE[2025-03-15 16:02:11.302][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:02:11.304][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/215045.xml".
biodb.DEBUG[2025-03-15 16:02:11.305][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:02:11.306][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:02:11.307][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:02:11.308][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:11.309][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:11.309][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:11.314][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:11.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:11.315][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:11.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:11.317][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:11.318][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:11.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.320][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:11.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:11.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.324][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:02:11.325][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:02:11.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.326][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.327][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:02:11.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:02:11.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.330][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:11.330][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:11.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.332][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.333][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:11.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:11.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.336][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:11.336][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:11.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.338][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.339][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:11.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:11.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.341][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:11.342][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:11.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.344][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.344][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:11.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:11.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.348][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:11.348][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:11.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.350][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.351][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:02:11.352][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.353][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.354][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:02:11.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.357][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:11.357][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:11.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.359][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.360][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:11.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:11.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.363][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:11.364][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:11.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.365][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.366][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:11.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:11.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.369][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:02:11.370][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:02:11.371][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.371][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.372][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:02:11.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:02:11.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.375][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:02:11.376][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:02:11.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.377][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.378][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:02:11.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:02:11.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.381][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:11.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:11.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.384][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:11.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:11.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:11.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:11.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.390][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:11.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:11.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.393][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:11.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:11.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:11.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:11.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:11.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:11.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:11.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:11.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:11.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:11.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:11.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:11.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:11.411][self$createEntryFromContent] Accession numbers: 215045.
biodb.TRACE[2025-03-15 16:02:11.412][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.415][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.418][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:11.437][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:02:11.440][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:02:11.441][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-03-15 16:02:11.441][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:02:11.442][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-03-15 16:02:11.445][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:11.445][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:11.446][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:11.454][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:11.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:11.455][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:11.456][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:11.457][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.460][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.463][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:11.465][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:11.466][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:11.467][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:11.471][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:11.472][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:11.472][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:11.473][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:11.474][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.477][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.480][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.483][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.486][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:11.489][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:11.489][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:11.490][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:11.495][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:11.495][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:11.496][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:11.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:11.498][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.501][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.504][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.507][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.511][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:11.514][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:11.515][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:11.516][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:11.521][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:11.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:11.522][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:11.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:11.524][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.528][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.531][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.535][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.538][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:11.542][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:11.543][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:11.543][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:11.549][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:11.550][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:11.551][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:11.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:11.552][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.556][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.559][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:11.563][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:11.563][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:11.564][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:11.569][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:11.569][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:11.570][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:11.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:11.572][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.575][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.578][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:11.581][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:11.582][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:11.583][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:11.587][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:11.588][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:11.589][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:11.589][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:11.590][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.593][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.597][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:11.600][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:11.600][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:11.601][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:11.605][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:11.606][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:11.607][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:11.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:11.608][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.611][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.614][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:11.618][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:11.618][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:11.619][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:11.623][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:11.624][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:11.625][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:11.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:11.626][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.630][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.633][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:11.636][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:11.637][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:11.638][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:11.642][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:11.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:11.643][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:11.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:11.645][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.648][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.651][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:11.653][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:11.654][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:11.655][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:11.659][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:11.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:11.660][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:11.661][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:11.662][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.665][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.668][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:11.671][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:11.671][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:11.672][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:11.676][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:11.677][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:11.678][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:11.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:11.679][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.682][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.685][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:11.688][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:11.688][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:11.689][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:11.693][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:11.693][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:11.694][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:11.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:11.696][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.698][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.701][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:11.704][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:11.705][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:11.705][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:11.710][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:11.710][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:11.711][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:11.712][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:11.712][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.715][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.719][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:11.722][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:11.722][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:11.723][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:11.727][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:11.728][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:11.729][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:11.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:11.730][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.733][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.736][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:11.739][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:11.740][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:11.744][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:11.748][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:11.749][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:11.749][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:11.750][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:11.751][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.754][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.757][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:11.760][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:11.760][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:11.761][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:11.765][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:11.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:11.766][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:11.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:11.768][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.771][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.774][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:11.777][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:11.777][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:11.778][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:11.782][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:11.783][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:11.784][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:11.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:11.785][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.788][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.791][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:11.794][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:11.794][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:11.795][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:11.799][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:11.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:11.800][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:11.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:11.802][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.805][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.808][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:11.811][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:11.811][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:11.812][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:11.816][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:11.817][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:11.817][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:11.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:11.819][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.822][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.825][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.841][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:11.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:11.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.844][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:11.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:11.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.848][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:11.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:11.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.851][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:11.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:11.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.853][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:11.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:11.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:11.874][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:02:11.876][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:02:11.878][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c5171beada848a87ef2ffa10427d9be3".
biodb.TRACE[2025-03-15 16:02:11.878][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:02:11.880][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c5171beada848a87ef2ffa10427d9be3.content".
biodb.DEBUG[2025-03-15 16:02:11.882][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:02:11.884][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:02:11.885][cch$loadFileContent] Trying to load 1 files from cache: [1]: "750e63ff76a843f016511fa71c89113e".
biodb.TRACE[2025-03-15 16:02:11.886][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:02:11.888][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/750e63ff76a843f016511fa71c89113e.content".
biodb.DEBUG[2025-03-15 16:02:11.890][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:11.890][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:11.891][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:11.895][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:11.896][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:11.897][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:11.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:11.898][private$loadEntries] Creating entries from ids [1]: "4648".
biodb.DEBUG[2025-03-15 16:02:11.899][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:02:11.900][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4648".
biodb.TRACE[2025-03-15 16:02:11.901][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:02:11.903][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4648.xml".
biodb.DEBUG[2025-03-15 16:02:11.904][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:02:11.905][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:02:11.906][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:02:11.907][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:11.907][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:11.908][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:11.912][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:11.913][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:11.914][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:11.914][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:11.917][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:11.917][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:11.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.919][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:11.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:11.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.923][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:02:11.924][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:02:11.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.925][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.926][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:02:11.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:02:11.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.929][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:11.930][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:11.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.931][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.932][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:11.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:11.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.935][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:11.936][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:11.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.938][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.939][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:11.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:11.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.942][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:11.942][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:11.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.944][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.945][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:11.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:11.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.948][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:11.949][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:11.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.950][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.951][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:11.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:11.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.954][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:02:11.955][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.956][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.957][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:02:11.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:11.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.960][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:11.961][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:11.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.963][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.963][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:11.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:11.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.967][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:11.967][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:11.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.969][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.970][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:11.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:11.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.973][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:02:11.974][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:02:11.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.975][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.976][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:02:11.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:02:11.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.979][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:02:11.980][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:02:11.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.981][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.982][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:02:11.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:02:11.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.985][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:11.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:11.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.988][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:11.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:11.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.991][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:11.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:11.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.994][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:11.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:11.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:11.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:11.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:11.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:11.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.000][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:12.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:12.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:12.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:12.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:12.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:12.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:12.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:12.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:12.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:12.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:12.020][self$createEntryFromContent] Accession numbers: 4648.
biodb.TRACE[2025-03-15 16:02:12.021][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.024][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.027][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:12.029][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:12.030][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:12.031][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:12.035][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:12.036][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:12.036][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:12.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:12.038][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.041][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.044][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:12.047][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:12.048][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:12.049][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:12.053][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:12.054][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:12.054][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:12.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:12.056][private$loadEntries] Creating entries from ids [1]: "62447".
biodb.DEBUG[2025-03-15 16:02:12.056][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:02:12.058][cch$loadFileContent] Trying to load 1 files from cache: [1]: "62447".
biodb.TRACE[2025-03-15 16:02:12.058][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:02:12.060][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62447.xml".
biodb.DEBUG[2025-03-15 16:02:12.061][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:02:12.062][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:02:12.063][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:02:12.064][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:12.064][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:12.065][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:12.069][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:12.070][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:12.070][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:12.071][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:12.073][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:12.073][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:12.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.075][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:12.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:12.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.079][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:02:12.079][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:02:12.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.081][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.082][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:02:12.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:02:12.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.085][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:12.085][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:12.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.087][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.087][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:12.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:12.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.090][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:12.091][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:12.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.093][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.094][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:12.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:12.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.096][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:12.097][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:12.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.098][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.099][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:12.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:12.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.102][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:12.103][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:12.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.104][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.105][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:02:12.106][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:12.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.107][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.108][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:02:12.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:12.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.111][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.112][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.114][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.115][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.118][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:12.118][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:12.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.120][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.121][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:12.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:12.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.124][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:02:12.125][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:02:12.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.126][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.127][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:02:12.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:02:12.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.130][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:02:12.130][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:02:12.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.132][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.133][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:02:12.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:02:12.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.136][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:12.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:12.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.138][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:12.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:12.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:12.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:12.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.144][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:12.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:12.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:12.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:12.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:12.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:12.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:12.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:12.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:12.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:12.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:12.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:12.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:12.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:12.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:12.164][self$createEntryFromContent] Accession numbers: 62447.
biodb.TRACE[2025-03-15 16:02:12.165][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.168][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.171][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:12.189][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:02:12.192][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:02:12.193][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-03-15 16:02:12.194][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:02:12.195][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-03-15 16:02:12.197][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:12.197][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:12.198][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:12.202][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:12.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:12.203][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:12.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:12.205][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.207][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.210][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:12.213][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:12.214][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:12.215][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:12.219][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:12.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:12.220][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:12.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:12.221][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.224][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.227][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.230][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.233][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:12.236][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:12.236][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:12.237][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:12.241][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:12.242][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:12.242][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:12.243][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:12.244][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.247][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.250][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.252][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.255][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:12.258][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:12.259][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:12.259][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:12.263][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:12.264][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:12.265][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:12.266][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:12.266][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.269][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.272][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.275][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.278][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:12.281][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:12.282][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:12.283][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:12.290][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:12.291][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:12.292][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:12.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:12.294][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.297][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.300][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:12.302][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:12.303][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:12.304][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:12.308][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:12.308][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:12.309][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:12.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:12.311][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.313][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.316][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:12.319][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:12.320][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:12.320][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:12.324][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:12.325][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:12.326][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:12.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:12.327][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.330][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.332][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:12.335][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:12.336][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:12.337][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:12.341][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:12.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:12.342][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:12.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:12.343][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.346][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.349][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:12.352][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:12.353][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:12.353][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:12.358][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:12.358][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:12.359][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:12.360][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:12.361][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.364][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.367][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:12.371][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:12.371][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:12.372][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:12.377][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:12.378][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:12.379][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:12.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:12.380][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.383][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.387][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:12.390][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:12.390][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:12.391][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:12.396][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:12.397][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:12.397][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:12.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:12.399][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.402][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.406][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:12.409][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:12.410][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:12.411][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:12.416][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:12.416][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:12.417][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:12.418][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:12.419][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.422][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.426][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:12.429][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:12.430][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:12.430][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:12.435][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:12.436][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:12.437][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:12.437][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:12.438][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.442][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.445][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:12.448][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:12.449][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:12.449][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:12.453][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:12.454][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:12.455][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:12.456][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:12.457][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.460][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.463][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:12.466][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:12.466][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:12.467][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:12.471][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:12.472][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:12.473][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:12.473][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:12.474][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.478][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.481][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:12.484][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:12.484][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:12.485][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:12.489][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:12.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:12.491][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:12.491][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:12.492][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.495][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.498][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:12.501][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:12.502][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:12.502][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:12.507][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:12.507][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:12.508][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:12.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:12.509][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.512][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.515][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:12.519][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:12.519][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:12.520][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:12.524][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:12.525][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:12.526][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:12.526][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:12.527][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.530][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.533][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:12.536][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:12.537][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:12.537][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:12.542][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:12.542][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:12.543][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:12.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:12.544][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.547][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.550][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:12.553][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:12.554][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:12.555][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:12.559][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:12.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:12.561][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:12.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:12.562][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.565][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.568][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:12.591][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:02:12.593][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:02:12.594][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-03-15 16:02:12.595][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:02:12.596][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-03-15 16:02:12.598][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:12.599][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:12.600][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:12.604][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:12.604][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:12.605][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:12.606][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:12.606][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.609][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.612][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:12.615][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:12.616][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:12.616][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:12.620][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:12.621][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:12.622][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:12.622][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:12.623][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.626][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.629][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.632][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.635][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:12.638][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:12.639][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:12.639][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:12.644][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:12.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:12.645][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:12.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:12.647][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.650][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.653][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.656][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.659][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:12.662][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:12.662][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:12.663][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:12.668][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:12.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:12.669][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:12.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:12.671][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.674][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.677][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.680][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.683][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:12.686][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:12.687][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:12.687][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:12.692][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:12.693][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:12.693][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:12.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:12.695][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.698][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.701][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:12.705][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:12.705][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:12.706][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:12.711][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:12.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:12.713][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:12.714][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:12.715][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.718][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.721][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:12.725][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:12.725][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:12.726][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:12.731][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:12.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:12.733][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:12.733][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:12.734][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.738][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.741][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:12.744][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:12.744][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:12.745][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:12.750][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:12.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:12.751][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:12.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:12.753][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.756][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.759][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:12.763][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:12.763][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:12.764][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:12.769][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:12.770][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:12.770][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:12.771][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:12.772][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.776][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.779][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:12.782][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:12.783][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:12.783][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:12.788][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:12.789][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:12.790][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:12.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:12.791][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.794][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.798][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:12.801][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:12.801][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:12.802][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:12.807][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:12.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:12.808][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:12.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:12.810][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.813][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.816][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:12.819][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:12.820][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:12.821][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:12.825][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:12.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:12.827][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:12.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:12.828][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.832][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.835][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:12.838][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:12.838][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:12.839][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:12.844][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:12.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:12.845][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:12.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:12.847][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.850][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.854][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:12.857][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:12.858][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:12.858][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:12.863][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:12.864][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:12.864][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:12.865][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:12.866][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.869][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.872][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:12.879][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:12.880][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:12.881][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:12.885][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:12.885][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:12.886][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:12.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:12.888][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.891][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.894][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:12.897][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:12.898][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:12.898][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:12.902][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:12.903][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:12.904][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:12.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:12.906][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.909][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.912][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:12.915][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:12.916][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:12.917][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:12.923][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:12.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:12.925][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:12.925][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:12.926][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.929][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.933][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:12.935][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:12.936][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:12.937][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:12.941][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:12.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:12.943][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:12.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:12.944][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.947][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.951][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:12.954][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:12.954][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:12.955][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:12.960][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:12.960][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:12.961][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:12.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:12.962][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.966][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.969][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:12.972][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:12.973][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:12.974][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:12.978][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:12.979][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:12.980][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:12.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:12.981][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.984][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:12.988][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:12.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:12.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.005][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-03-15 16:02:13.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-03-15 16:02:13.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-15 16:02:13.015][biodb::testThat]
biodb.INFO [2025-03-15 16:02:13.016][biodb::testThat] Running test function test_annotateMzValues_input_vector (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2025-03-15 16:02:13.017][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-15 16:02:13.018][biodb::testThat]
biodb.TRACE[2025-03-15 16:02:13.020][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-15 16:02:13.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-15 16:02:13.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.023][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-15 16:02:13.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-15 16:02:13.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.027][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-15 16:02:13.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-15 16:02:13.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.030][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:13.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:13.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.033][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:13.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:13.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.036][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:13.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:13.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.039][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:13.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:13.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.043][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:13.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:13.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.046][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:13.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:13.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.049][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:13.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:13.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.052][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:13.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:13.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.055][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:13.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:13.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.058][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:13.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:13.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.061][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:13.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:13.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.064][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:13.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:13.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:13.068][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:13.069][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:13.070][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:13.074][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:13.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:13.076][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:13.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:13.078][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:02:13.081][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:02:13.082][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-03-15 16:02:13.082][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:02:13.083][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-03-15 16:02:13.085][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:13.086][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:13.086][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:13.091][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:13.091][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:13.092][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:13.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:13.093][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:13.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:13.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.096][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:13.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:13.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.099][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:13.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:13.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:13.103][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:02:13.105][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:02:13.106][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-03-15 16:02:13.107][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:02:13.108][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-03-15 16:02:13.110][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:13.110][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:13.111][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:13.115][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:13.116][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:13.117][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:13.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:13.118][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:13.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:13.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.121][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:13.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:13.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.125][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:13.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:13.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:13.128][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:13.128][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:13.129][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:13.133][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:13.134][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:13.135][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:13.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:13.136][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:13.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:13.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.139][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:13.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:13.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.142][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:13.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:13.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:13.145][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:02:13.146][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:13.147][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:13.147][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:13.152][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:13.152][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:13.153][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:13.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:13.154][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:13.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:13.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.157][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:13.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:13.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.160][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:02:13.161][private$selectFields]
biodb.TRACE[2025-03-15 16:02:13.161][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:13.162][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:13.163][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:02:13.164][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:13.164][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:13.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.166][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.170][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:13.171][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:13.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.173][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.173][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:02:13.174][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:02:13.175][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:13.175][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:13.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.177][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.177][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:02:13.178][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:13.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:13.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:13.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:13.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.184][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:13.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:13.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.192][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-03-15 16:02:13.193][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:13.194][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:13.195][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:13.199][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:13.200][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:13.200][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:13.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:13.202][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:13.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:13.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.205][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:13.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:13.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.208][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:02:13.209][private$selectFields]
biodb.TRACE[2025-03-15 16:02:13.209][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:13.210][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:13.211][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:02:13.212][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:13.212][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:13.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.214][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.214][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:13.215][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:13.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.216][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.217][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:02:13.218][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:02:13.219][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:13.219][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:13.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.221][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.221][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:02:13.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:13.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:13.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.225][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:13.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:13.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.228][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:13.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:13.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.231][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-03-15 16:02:13.231][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:13.232][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:13.233][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:13.237][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:13.238][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:13.239][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:13.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:13.240][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:13.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:13.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.243][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:13.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:13.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.246][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:02:13.247][private$selectFields]
biodb.TRACE[2025-03-15 16:02:13.248][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:13.249][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:13.249][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:02:13.250][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:13.251][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:13.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.252][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.253][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:13.254][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:13.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.256][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.256][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:02:13.257][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:02:13.258][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:13.259][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:13.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.260][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.261][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:02:13.262][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:13.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:13.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.265][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:13.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:13.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:13.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:13.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:13.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:13.271][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-03-15 16:02:13.272][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:02:13.273][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:02:13.275][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:13.275][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:13.276][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:13.281][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:13.281][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:13.282][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:13.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:13.285][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:02:13.287][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:02:13.288][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:02:13.289][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-03-15 16:02:13.667][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-03-15 16:02:14.022][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:02:14.024][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content"
biodb.TRACE[2025-03-15 16:02:14.027][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.request"
biodb.DEBUG[2025-03-15 16:02:14.029][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:14.030][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:14.030][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:14.035][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:14.035][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:14.036][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:14.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:14.038][private$loadEntries] Creating entries from ids [1]: "113227".
biodb.DEBUG[2025-03-15 16:02:14.038][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:02:14.040][cch$loadFileContent] Trying to load 1 files from cache: [1]: "113227".
biodb.TRACE[2025-03-15 16:02:14.041][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:02:14.042][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:02:14.042][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:02:14.043][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:02:14.044][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:02:14.045][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:02:14.047][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:14.047][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:14.048][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:14.052][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:14.053][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:14.054][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:14.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:14.056][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=113227".
biodb.DEBUG[2025-03-15 16:02:14.058][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:02:14.058][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:02:14.059][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=113227".
biodb.TRACE[2025-03-15 16:02:14.424][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=113227).
biodb.DEBUG[2025-03-15 16:02:14.777][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:02:14.779][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ed496dac459a2ba62e671edbcae22326.content"
biodb.TRACE[2025-03-15 16:02:14.781][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ed496dac459a2ba62e671edbcae22326.request"
biodb.TRACE[2025-03-15 16:02:14.783][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/113227.xml"
biodb.DEBUG[2025-03-15 16:02:14.784][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:02:14.785][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:02:14.786][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:02:14.787][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:14.788][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:14.789][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:14.793][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:14.794][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:14.795][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:14.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:14.797][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:14.798][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:14.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:14.799][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:14.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:14.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:14.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:14.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:14.803][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:02:14.804][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:02:14.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:14.805][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:14.806][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:02:14.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:02:14.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:14.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:14.809][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:14.810][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:14.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:14.811][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:14.812][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:14.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:14.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:14.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:14.815][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:14.816][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:14.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:14.818][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:14.818][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:14.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:14.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:14.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:14.821][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:14.822][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:14.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:14.823][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:14.824][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:14.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:14.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:14.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:14.827][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:14.828][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:14.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:14.829][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:14.830][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:02:14.831][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:14.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:14.832][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:14.833][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:02:14.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:14.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:14.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:14.836][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:14.837][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:14.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:14.838][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:14.839][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:14.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:14.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:14.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:14.842][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:14.843][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:14.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:14.844][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:14.845][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:14.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:14.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:14.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:14.848][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:02:14.849][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:02:14.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:14.850][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:14.851][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:02:14.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:02:14.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:14.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:14.854][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:02:14.855][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:02:14.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:14.856][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:14.857][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:02:14.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:02:14.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:14.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:14.860][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:14.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:14.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:14.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:14.863][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:14.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:14.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:14.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:14.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:14.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:14.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:14.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:14.869][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:14.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:14.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:14.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:14.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:14.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:14.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:14.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:14.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:14.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:14.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:14.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:14.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:14.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:14.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:14.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:14.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:14.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:14.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:14.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:14.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:14.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:14.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:14.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:14.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:14.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:14.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:14.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:14.899][self$createEntryFromContent] Accession numbers: 113227.
biodb.TRACE[2025-03-15 16:02:14.900][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:14.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:14.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:14.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:14.902][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:14.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:14.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:14.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:14.905][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:14.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:14.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:14.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:14.908][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:14.909][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:14.909][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:14.913][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:14.914][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:14.915][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:14.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:14.916][private$loadEntries] Creating entries from ids [1]: "169712".
biodb.DEBUG[2025-03-15 16:02:14.917][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:02:14.918][cch$loadFileContent] Trying to load 1 files from cache: [1]: "169712".
biodb.TRACE[2025-03-15 16:02:14.919][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:02:14.920][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:02:14.921][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:02:14.921][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:02:14.922][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:02:14.923][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:02:14.925][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:14.925][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:14.926][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:14.930][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:14.931][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:14.932][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:14.932][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:14.933][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169712".
biodb.DEBUG[2025-03-15 16:02:14.935][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:02:14.936][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:02:14.937][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169712".
biodb.TRACE[2025-03-15 16:02:15.311][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169712).
biodb.DEBUG[2025-03-15 16:02:15.673][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:02:15.675][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6e52d7b9d801aec68d97cc03bd4acc90.content"
biodb.TRACE[2025-03-15 16:02:15.678][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6e52d7b9d801aec68d97cc03bd4acc90.request"
biodb.TRACE[2025-03-15 16:02:15.680][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169712.xml"
biodb.DEBUG[2025-03-15 16:02:15.681][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:02:15.682][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:02:15.682][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:02:15.684][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:15.684][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:15.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:15.689][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:15.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:15.690][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:15.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:15.693][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:15.694][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:15.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:15.695][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:15.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:15.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:15.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:15.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:15.699][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:02:15.700][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:02:15.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:15.701][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:15.702][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:02:15.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:02:15.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:15.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:15.705][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:15.706][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:15.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:15.707][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:15.708][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:15.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:15.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:15.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:15.711][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:15.712][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:15.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:15.713][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:15.714][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:15.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:15.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:15.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:15.717][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:15.717][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:15.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:15.719][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:15.720][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:15.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:15.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:15.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:15.723][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:15.724][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:15.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:15.725][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:15.726][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:02:15.727][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:15.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:15.728][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:15.729][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:02:15.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:15.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:15.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:15.732][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:15.733][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:15.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:15.734][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:15.735][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:15.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:15.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:15.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:15.738][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:15.739][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:15.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:15.740][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:15.741][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:15.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:15.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:15.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:15.745][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:02:15.745][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:02:15.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:15.747][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:15.748][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:02:15.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:02:15.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:15.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:15.751][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:02:15.752][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:02:15.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:15.753][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:15.755][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:02:15.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:02:15.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:15.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:15.758][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:15.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:15.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:15.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:15.761][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:15.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:15.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:15.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:15.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:15.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:15.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:15.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:15.767][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:15.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:15.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:15.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:15.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:15.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:15.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:15.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:15.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:15.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:15.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:15.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:15.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:15.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:15.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:15.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:15.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:15.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:15.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:15.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:15.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:15.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:15.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:15.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:15.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:15.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:15.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:15.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:15.787][self$createEntryFromContent] Accession numbers: 169712.
biodb.TRACE[2025-03-15 16:02:15.788][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:15.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:15.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:15.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:15.791][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:15.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:15.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:15.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:15.794][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:15.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:15.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:15.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:15.797][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:02:15.800][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:02:15.800][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:02:15.802][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-03-15 16:02:16.163][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-03-15 16:02:16.526][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:02:16.527][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content"
biodb.TRACE[2025-03-15 16:02:16.531][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.request"
biodb.DEBUG[2025-03-15 16:02:16.533][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:16.534][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:16.535][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:16.539][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:16.540][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:16.541][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:16.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:16.542][private$loadEntries] Creating entries from ids [1]: "4781".
biodb.DEBUG[2025-03-15 16:02:16.543][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:02:16.544][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4781".
biodb.TRACE[2025-03-15 16:02:16.545][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:02:16.546][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:02:16.547][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:02:16.548][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:02:16.548][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:02:16.549][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:02:16.551][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:16.552][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:16.553][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:16.557][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:16.558][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:16.558][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:16.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:16.560][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4781".
biodb.DEBUG[2025-03-15 16:02:16.562][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:02:16.563][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:02:16.564][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4781".
biodb.TRACE[2025-03-15 16:02:16.932][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4781).
biodb.DEBUG[2025-03-15 16:02:17.398][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:02:17.400][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e4869054c906476bc1e4ece10c7e53cc.content"
biodb.TRACE[2025-03-15 16:02:17.403][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e4869054c906476bc1e4ece10c7e53cc.request"
biodb.TRACE[2025-03-15 16:02:17.405][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4781.xml"
biodb.DEBUG[2025-03-15 16:02:17.406][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:02:17.407][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:02:17.408][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:02:17.409][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:17.409][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:17.410][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:17.415][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:17.415][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:17.416][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:17.416][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:17.419][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:17.420][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:17.420][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:17.421][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:17.422][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:17.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:17.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:17.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:17.425][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:02:17.426][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:02:17.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:17.427][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:17.428][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:02:17.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:02:17.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:17.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:17.431][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:17.432][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:17.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:17.433][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:17.434][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:17.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:17.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:17.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:17.437][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:17.438][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:17.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:17.440][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:17.440][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:17.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:17.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:17.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:17.443][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:17.444][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:17.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:17.446][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:17.447][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:17.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:17.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:17.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:17.460][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:17.461][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:17.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:17.462][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:17.463][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:17.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:17.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:17.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:17.467][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:02:17.467][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:17.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:17.469][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:17.470][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:02:17.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:17.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:17.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:17.473][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:17.473][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:17.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:17.475][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:17.476][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:17.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:17.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:17.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:17.479][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:17.480][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:17.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:17.481][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:17.482][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:17.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:17.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:17.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:17.485][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:02:17.486][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:02:17.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:17.487][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:17.488][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:02:17.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:02:17.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:17.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:17.491][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:02:17.492][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:02:17.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:17.493][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:17.494][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:02:17.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:02:17.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:17.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:17.497][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:17.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:17.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:17.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:17.500][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:17.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:17.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:17.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:17.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:17.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:17.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:17.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:17.506][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:17.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:17.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:17.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:17.509][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:17.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:17.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:17.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:17.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:17.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:17.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:17.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:17.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:17.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:17.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:17.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:17.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:17.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:17.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:17.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:17.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:17.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:17.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:17.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:17.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:17.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:17.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:17.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:17.525][self$createEntryFromContent] Accession numbers: 4781.
biodb.TRACE[2025-03-15 16:02:17.526][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:17.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:17.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:17.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:17.529][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:17.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:17.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:17.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:17.532][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:17.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:17.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:17.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:17.535][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:17.535][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:17.536][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:17.540][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:17.541][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:17.541][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:17.542][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:17.543][private$loadEntries] Creating entries from ids [1]: "16587".
biodb.DEBUG[2025-03-15 16:02:17.544][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:02:17.545][cch$loadFileContent] Trying to load 1 files from cache: [1]: "16587".
biodb.TRACE[2025-03-15 16:02:17.546][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:02:17.546][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:02:17.547][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:02:17.548][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:02:17.549][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:02:17.549][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:02:17.551][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:17.552][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:17.553][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:17.557][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:17.558][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:17.558][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:17.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:17.560][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=16587".
biodb.DEBUG[2025-03-15 16:02:17.562][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:02:17.563][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:02:17.564][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=16587".
biodb.TRACE[2025-03-15 16:02:17.918][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=16587).
biodb.DEBUG[2025-03-15 16:02:18.286][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:02:18.288][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6012905c0932919c069ecb5afc0b487b.content"
biodb.TRACE[2025-03-15 16:02:18.291][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6012905c0932919c069ecb5afc0b487b.request"
biodb.TRACE[2025-03-15 16:02:18.293][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/16587.xml"
biodb.DEBUG[2025-03-15 16:02:18.294][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:02:18.295][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:02:18.296][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:02:18.297][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:18.298][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:18.299][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:18.303][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:18.304][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:18.305][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:18.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:18.307][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:18.308][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:18.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.309][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:18.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:18.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.313][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:02:18.314][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:02:18.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.316][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.317][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:02:18.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:02:18.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.320][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:18.321][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:18.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.322][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.323][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:18.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:18.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.327][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:18.327][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:18.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.329][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.330][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:18.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:18.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.333][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:18.334][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:18.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.335][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.336][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:18.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:18.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.339][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:18.340][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:18.341][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.342][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.343][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:18.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:18.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.346][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:02:18.347][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:18.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.348][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.349][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:02:18.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:18.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.352][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:18.352][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:18.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.354][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.355][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:18.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:18.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.358][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:18.359][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:18.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.360][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.361][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:18.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:18.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.364][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:02:18.365][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:02:18.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.366][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.367][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:02:18.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:02:18.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.370][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:02:18.371][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:02:18.371][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.372][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.373][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:02:18.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:02:18.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.376][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:18.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:18.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.379][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:18.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:18.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:18.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:18.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.385][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:18.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:18.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:18.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:18.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:18.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:18.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:18.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:18.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.397][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:18.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:18.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:18.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:18.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:18.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:18.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:18.406][self$createEntryFromContent] Accession numbers: 16587.
biodb.TRACE[2025-03-15 16:02:18.407][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:18.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:18.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.410][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:18.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:18.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:18.413][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:18.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:18.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:18.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:18.416][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:18.416][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:18.417][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:18.422][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:18.422][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:18.423][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:18.424][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:18.424][private$loadEntries] Creating entries from ids [1]: "19804".
biodb.DEBUG[2025-03-15 16:02:18.425][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:02:18.426][cch$loadFileContent] Trying to load 1 files from cache: [1]: "19804".
biodb.TRACE[2025-03-15 16:02:18.427][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:02:18.428][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:02:18.429][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:02:18.430][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:02:18.430][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:02:18.431][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:02:18.433][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:18.434][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:18.434][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:18.438][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:18.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:18.440][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:18.440][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:18.441][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=19804".
biodb.DEBUG[2025-03-15 16:02:18.443][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:02:18.444][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:02:18.445][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=19804".
biodb.TRACE[2025-03-15 16:02:18.817][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=19804).
biodb.DEBUG[2025-03-15 16:02:19.172][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:02:19.174][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef7e014212775cbaa9299e60f32b2bcd.content"
biodb.TRACE[2025-03-15 16:02:19.177][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef7e014212775cbaa9299e60f32b2bcd.request"
biodb.TRACE[2025-03-15 16:02:19.179][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/19804.xml"
biodb.DEBUG[2025-03-15 16:02:19.180][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:02:19.181][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:02:19.182][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:02:19.183][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:19.183][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:19.184][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:19.189][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:19.190][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:19.190][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:19.191][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:19.192][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.193][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.195][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.199][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:02:19.200][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:02:19.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.201][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.202][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:02:19.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:02:19.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.205][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:19.206][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:19.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.207][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.208][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:19.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:19.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.211][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:19.212][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:19.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.213][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.214][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:19.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:19.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.217][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:19.218][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:19.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.219][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.221][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:19.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:19.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.224][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:19.224][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:19.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.226][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.227][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:02:19.227][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:19.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.229][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.230][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:02:19.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:19.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.233][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:19.233][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:19.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.235][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.236][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:19.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:19.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.239][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:19.240][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:19.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.241][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.242][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:19.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:19.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.245][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:02:19.246][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:02:19.247][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.247][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.248][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:02:19.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:02:19.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.251][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:02:19.252][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:02:19.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.253][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.254][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:02:19.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:02:19.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.258][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:19.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:19.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.261][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:19.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:19.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.267][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:19.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:19.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:19.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:19.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:19.288][self$createEntryFromContent] Accession numbers: 19804.
biodb.TRACE[2025-03-15 16:02:19.289][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:19.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:19.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.292][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:19.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:19.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.295][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:19.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:19.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:19.316][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:02:19.334][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:19.335][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:19.336][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:19.341][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:19.342][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:19.342][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:19.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:19.344][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:19.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:19.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.348][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:19.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:19.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.351][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:02:19.352][private$selectFields]
biodb.TRACE[2025-03-15 16:02:19.352][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:19.353][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:19.354][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:02:19.355][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:19.356][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:19.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.357][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.358][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:19.359][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:19.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.360][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.361][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:02:19.362][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:02:19.362][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:19.363][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:19.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.365][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.366][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:02:19.366][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:19.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:19.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.370][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:19.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:19.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.373][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:19.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:19.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.376][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-03-15 16:02:19.377][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:19.378][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:19.379][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:19.383][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:19.384][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:19.385][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:19.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:19.387][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:19.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:19.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.390][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:19.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:19.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.393][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:02:19.394][private$selectFields]
biodb.TRACE[2025-03-15 16:02:19.394][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:19.395][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:19.396][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:02:19.397][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:19.397][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:19.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.399][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.400][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:19.401][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:19.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.402][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.403][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:02:19.403][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:02:19.404][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:19.405][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:19.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.406][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.407][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:02:19.408][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:19.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:19.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.411][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:19.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:19.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.414][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:19.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:19.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.417][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-03-15 16:02:19.419][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:19.419][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:19.420][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:19.424][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:19.425][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:19.426][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:19.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:19.427][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:19.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:19.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.430][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:19.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:19.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.433][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:02:19.441][private$selectFields]
biodb.TRACE[2025-03-15 16:02:19.442][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:19.442][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:19.443][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:02:19.444][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:19.445][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:19.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.446][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.447][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:19.447][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:19.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.449][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.450][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:02:19.450][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:02:19.451][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:19.452][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:19.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.453][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.454][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:02:19.455][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:19.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:19.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.458][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:19.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:19.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.461][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:19.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:19.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:19.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:19.464][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-03-15 16:02:19.465][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:02:19.465][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:02:19.467][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:19.468][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:19.468][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:19.473][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:19.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:19.474][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:19.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:19.477][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:02:19.480][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:02:19.481][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:02:19.482][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-03-15 16:02:19.840][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-03-15 16:02:20.193][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:02:20.194][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content"
biodb.TRACE[2025-03-15 16:02:20.197][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.request"
biodb.DEBUG[2025-03-15 16:02:20.199][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:20.200][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:20.201][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:20.205][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:20.206][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:20.206][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:20.207][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:20.208][private$loadEntries] Creating entries from ids [1]: "159630".
biodb.DEBUG[2025-03-15 16:02:20.208][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:02:20.210][cch$loadFileContent] Trying to load 1 files from cache: [1]: "159630".
biodb.TRACE[2025-03-15 16:02:20.210][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:02:20.211][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:02:20.212][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:02:20.213][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:02:20.214][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:02:20.214][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:02:20.216][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:20.217][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:20.218][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:20.222][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:20.223][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:20.223][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:20.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:20.225][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=159630".
biodb.DEBUG[2025-03-15 16:02:20.227][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:02:20.228][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:02:20.229][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=159630".
biodb.TRACE[2025-03-15 16:02:20.582][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=159630).
biodb.DEBUG[2025-03-15 16:02:20.952][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:02:20.954][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f9497c6792bdb2528746e6a81b02589e.content"
biodb.TRACE[2025-03-15 16:02:20.956][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f9497c6792bdb2528746e6a81b02589e.request"
biodb.TRACE[2025-03-15 16:02:20.959][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/159630.xml"
biodb.DEBUG[2025-03-15 16:02:20.960][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:02:20.961][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:02:20.962][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:02:20.963][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:20.964][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:20.965][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:20.969][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:20.970][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:20.971][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:20.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:20.973][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:20.974][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:20.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.975][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:20.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:20.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.980][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:02:20.980][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:02:20.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.982][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.983][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:02:20.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:02:20.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.986][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:20.987][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:20.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.988][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.989][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:20.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:20.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.992][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:20.993][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:20.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.995][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.996][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:20.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:20.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:20.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:20.998][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:20.999][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:21.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:21.001][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:21.002][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:21.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:21.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:21.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:21.005][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:21.005][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:21.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:21.007][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:21.008][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:02:21.009][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:21.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:21.010][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:21.011][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:02:21.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:21.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:21.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:21.014][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:21.015][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:21.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:21.016][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:21.017][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:21.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:21.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:21.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:21.020][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:21.021][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:21.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:21.022][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:21.023][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:21.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:21.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:21.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:21.026][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:02:21.027][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:02:21.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:21.029][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:21.030][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:02:21.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:02:21.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:21.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:21.032][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:02:21.033][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:02:21.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:21.035][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:21.035][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:02:21.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:02:21.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:21.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:21.039][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:21.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:21.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:21.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:21.042][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:21.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:21.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:21.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:21.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:21.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:21.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:21.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:21.048][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:21.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:21.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:21.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:21.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:21.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:21.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:21.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:21.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:21.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:21.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:21.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:21.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:21.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:21.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:21.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:21.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:21.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:21.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:21.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:21.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:21.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:21.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:21.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:21.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:21.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:21.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:21.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:21.069][self$createEntryFromContent] Accession numbers: 159630.
biodb.TRACE[2025-03-15 16:02:21.069][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:21.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:21.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:21.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:21.072][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:21.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:21.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:21.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:21.075][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:21.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:21.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:21.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:21.078][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:21.079][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:21.080][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:21.084][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:21.085][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:21.085][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:21.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:21.087][private$loadEntries] Creating entries from ids [1]: "160202".
biodb.DEBUG[2025-03-15 16:02:21.088][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:02:21.089][cch$loadFileContent] Trying to load 1 files from cache: [1]: "160202".
biodb.TRACE[2025-03-15 16:02:21.090][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:02:21.091][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:02:21.092][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:02:21.092][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:02:21.093][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:02:21.094][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:02:21.096][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:21.096][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:21.097][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:21.101][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:21.102][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:21.103][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:21.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:21.105][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160202".
biodb.DEBUG[2025-03-15 16:02:21.107][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:02:21.107][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:02:21.108][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160202".
biodb.TRACE[2025-03-15 16:02:22.017][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160202).
biodb.DEBUG[2025-03-15 16:02:22.378][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:02:22.380][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1de9586ccaafdf8e637928dc3e313d63.content"
biodb.TRACE[2025-03-15 16:02:22.383][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1de9586ccaafdf8e637928dc3e313d63.request"
biodb.TRACE[2025-03-15 16:02:22.385][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160202.xml"
biodb.DEBUG[2025-03-15 16:02:22.387][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:02:22.388][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:02:22.389][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:02:22.390][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:22.390][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:22.391][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:22.396][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:22.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:22.397][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:22.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:22.400][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:22.400][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:22.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:22.402][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:22.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:22.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:22.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:22.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:22.406][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:02:22.407][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:02:22.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:22.408][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:22.409][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:02:22.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:02:22.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:22.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:22.417][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:22.424][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:22.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:22.425][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:22.426][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:22.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:22.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:22.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:22.429][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:22.430][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:22.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:22.431][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:22.432][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:22.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:22.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:22.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:22.435][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:22.435][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:22.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:22.437][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:22.438][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:22.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:22.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:22.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:22.440][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:22.441][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:22.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:22.442][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:22.443][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:02:22.444][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:22.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:22.445][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:22.446][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:02:22.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:22.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:22.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:22.449][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:22.450][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:22.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:22.451][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:22.452][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:22.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:22.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:22.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:22.455][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:22.455][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:22.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:22.457][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:22.458][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:22.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:22.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:22.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:22.460][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:02:22.461][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:02:22.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:22.462][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:22.463][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:02:22.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:02:22.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:22.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:22.466][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:02:22.467][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:02:22.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:22.468][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:22.469][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:02:22.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:02:22.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:22.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:22.472][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:22.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:22.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:22.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:22.475][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:22.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:22.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:22.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:22.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:22.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:22.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:22.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:22.480][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:22.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:22.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:22.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:22.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:22.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:22.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:22.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:22.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:22.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:22.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:22.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:22.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:22.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:22.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:22.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:22.492][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:22.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:22.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:22.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:22.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:22.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:22.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:22.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:22.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:22.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:22.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:22.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:22.501][self$createEntryFromContent] Accession numbers: 160202.
biodb.TRACE[2025-03-15 16:02:22.502][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:22.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:22.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:22.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:22.505][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:22.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:22.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:22.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:22.507][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:22.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:22.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:22.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:22.510][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:22.511][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:22.512][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:22.516][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:22.517][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:22.517][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:22.518][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:22.519][private$loadEntries] Creating entries from ids [1]: "160393".
biodb.DEBUG[2025-03-15 16:02:22.520][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:02:22.521][cch$loadFileContent] Trying to load 1 files from cache: [1]: "160393".
biodb.TRACE[2025-03-15 16:02:22.522][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:02:22.523][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:02:22.523][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:02:22.524][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:02:22.525][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:02:22.526][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:02:22.528][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:22.528][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:22.529][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:22.533][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:22.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:22.535][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:22.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:22.536][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160393".
biodb.DEBUG[2025-03-15 16:02:22.538][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:02:22.539][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:02:22.540][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160393".
biodb.TRACE[2025-03-15 16:02:22.905][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160393).
biodb.DEBUG[2025-03-15 16:02:23.271][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:02:23.273][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e0266c32050b31cda3d5e01c2d907fcd.content"
biodb.TRACE[2025-03-15 16:02:23.275][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e0266c32050b31cda3d5e01c2d907fcd.request"
biodb.TRACE[2025-03-15 16:02:23.278][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160393.xml"
biodb.DEBUG[2025-03-15 16:02:23.279][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:02:23.280][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:02:23.281][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:02:23.282][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:23.283][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:23.284][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:23.288][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:23.289][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:23.289][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:23.290][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:23.292][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:23.293][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:23.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:23.294][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:23.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:23.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:23.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:23.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:23.298][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:02:23.299][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:02:23.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:23.301][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:23.301][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:02:23.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:02:23.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:23.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:23.305][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:23.306][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:23.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:23.307][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:23.308][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:23.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:23.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:23.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:23.311][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:23.312][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:23.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:23.314][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:23.315][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:23.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:23.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:23.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:23.318][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:23.319][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:23.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:23.320][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:23.321][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:23.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:23.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:23.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:23.324][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:23.325][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:23.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:23.326][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:23.327][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:02:23.328][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:23.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:23.330][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:23.330][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:02:23.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:23.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:23.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:23.333][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:23.334][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:23.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:23.336][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:23.337][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:23.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:23.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:23.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:23.340][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:23.341][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:23.341][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:23.342][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:23.343][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:23.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:23.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:23.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:23.347][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:02:23.347][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:02:23.348][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:23.349][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:23.350][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:02:23.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:02:23.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:23.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:23.353][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:02:23.353][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:02:23.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:23.355][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:23.356][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:02:23.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:02:23.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:23.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:23.359][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:23.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:23.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:23.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:23.362][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:23.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:23.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:23.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:23.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:23.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:23.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:23.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:23.368][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:23.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:23.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:23.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:23.371][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:23.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:23.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:23.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:23.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:23.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:23.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:23.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:23.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:23.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:23.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:23.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:23.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:23.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:23.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:23.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:23.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:23.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:23.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:23.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:23.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:23.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:23.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:23.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:23.389][self$createEntryFromContent] Accession numbers: 160393.
biodb.TRACE[2025-03-15 16:02:23.390][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:23.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:23.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:23.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:23.393][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:23.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:23.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:23.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:23.396][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:23.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:23.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:23.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:23.399][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:23.399][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:23.400][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:23.404][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:23.405][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:23.406][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:23.406][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:23.407][private$loadEntries] Creating entries from ids [1]: "160991".
biodb.DEBUG[2025-03-15 16:02:23.408][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:02:23.409][cch$loadFileContent] Trying to load 1 files from cache: [1]: "160991".
biodb.TRACE[2025-03-15 16:02:23.411][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:02:23.411][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:02:23.412][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:02:23.413][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:02:23.414][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:02:23.415][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:02:23.423][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:23.424][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:23.424][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:23.429][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:23.429][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:23.430][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:23.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:23.432][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160991".
biodb.DEBUG[2025-03-15 16:02:23.434][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:02:23.435][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:02:23.436][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160991".
biodb.TRACE[2025-03-15 16:02:23.792][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160991).
biodb.DEBUG[2025-03-15 16:02:24.150][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:02:24.151][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6bad8d3e957240d90a71edc1329f8f37.content"
biodb.TRACE[2025-03-15 16:02:24.155][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6bad8d3e957240d90a71edc1329f8f37.request"
biodb.TRACE[2025-03-15 16:02:24.157][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160991.xml"
biodb.DEBUG[2025-03-15 16:02:24.158][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:02:24.159][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:02:24.160][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:02:24.161][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:24.162][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:24.162][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:24.167][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:24.167][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:24.168][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:24.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:24.170][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:24.171][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:24.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:24.172][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:24.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:24.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:24.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:24.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:24.176][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:02:24.177][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:02:24.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:24.178][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:24.179][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:02:24.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:02:24.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:24.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:24.182][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:24.183][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:24.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:24.184][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:24.185][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:24.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:24.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:24.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:24.189][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:24.190][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:24.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:24.191][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:24.192][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:24.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:24.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:24.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:24.195][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:24.196][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:24.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:24.197][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:24.198][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:24.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:24.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:24.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:24.201][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:24.202][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:24.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:24.204][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:24.205][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:02:24.205][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:24.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:24.207][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:24.208][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:02:24.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:24.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:24.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:24.211][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:24.212][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:24.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:24.213][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:24.214][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:24.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:24.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:24.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:24.217][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:24.218][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:24.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:24.219][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:24.220][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:24.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:24.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:24.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:24.223][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:02:24.224][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:02:24.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:24.225][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:24.226][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:02:24.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:02:24.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:24.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:24.229][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:02:24.230][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:02:24.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:24.231][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:24.232][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:02:24.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:02:24.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:24.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:24.235][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:24.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:24.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:24.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:24.238][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:24.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:24.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:24.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:24.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:24.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:24.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:24.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:24.244][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:24.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:24.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:24.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:24.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:24.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:24.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:24.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:24.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:24.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:24.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:24.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:24.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:24.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:24.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:24.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:24.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:24.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:24.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:24.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:24.259][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:24.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:24.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:24.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:24.262][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:24.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:24.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:24.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:24.265][self$createEntryFromContent] Accession numbers: 160991.
biodb.TRACE[2025-03-15 16:02:24.266][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:24.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:24.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:24.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:24.269][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:24.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:24.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:24.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:24.272][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:24.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:24.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:24.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:24.275][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:24.275][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:24.276][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:24.281][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:24.282][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:24.282][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:24.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:24.284][private$loadEntries] Creating entries from ids [1]: "164975".
biodb.DEBUG[2025-03-15 16:02:24.285][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:02:24.286][cch$loadFileContent] Trying to load 1 files from cache: [1]: "164975".
biodb.TRACE[2025-03-15 16:02:24.287][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:02:24.288][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:02:24.288][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:02:24.289][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:02:24.290][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:02:24.291][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:02:24.293][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:24.294][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:24.294][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:24.299][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:24.300][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:24.300][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:24.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:24.302][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164975".
biodb.DEBUG[2025-03-15 16:02:24.304][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:02:24.305][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:02:24.306][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164975".
biodb.TRACE[2025-03-15 16:02:24.658][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164975).
biodb.DEBUG[2025-03-15 16:02:25.026][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:02:25.028][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b1cbfaf7aef2d62dc8db3306c1521943.content"
biodb.TRACE[2025-03-15 16:02:25.031][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b1cbfaf7aef2d62dc8db3306c1521943.request"
biodb.TRACE[2025-03-15 16:02:25.033][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/164975.xml"
biodb.DEBUG[2025-03-15 16:02:25.035][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:02:25.037][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:02:25.038][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:02:25.039][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:25.040][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:25.040][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:25.050][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:25.051][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:25.051][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:25.052][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:25.054][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:25.055][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:25.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:25.056][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:25.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:25.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:25.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:25.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:25.063][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:02:25.064][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:02:25.065][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:25.065][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:25.066][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:02:25.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:02:25.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:25.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:25.069][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:25.070][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:25.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:25.071][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:25.073][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:25.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:25.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:25.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:25.075][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:25.076][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:25.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:25.078][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:25.079][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:25.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:25.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:25.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:25.082][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:25.082][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:25.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:25.084][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:25.085][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:25.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:25.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:25.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:25.088][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:25.088][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:25.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:25.090][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:25.091][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:02:25.092][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:25.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:25.093][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:25.094][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:02:25.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:25.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:25.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:25.098][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:25.098][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:25.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:25.102][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:25.102][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:25.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:25.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:25.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:25.106][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:25.107][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:25.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:25.108][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:25.109][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:25.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:25.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:25.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:25.113][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:02:25.114][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:02:25.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:25.117][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:25.120][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:02:25.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:02:25.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:25.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:25.124][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:02:25.125][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:02:25.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:25.126][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:25.127][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:02:25.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:02:25.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:25.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:25.130][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:25.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:25.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:25.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:25.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:25.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:25.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:25.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:25.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:25.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:25.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:25.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:25.139][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:25.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:25.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:25.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:25.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:25.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:25.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:25.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:25.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:25.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:25.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:25.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:25.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:25.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:25.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:25.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:25.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:25.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:25.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:25.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:25.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:25.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:25.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:25.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:25.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:25.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:25.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:25.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:25.173][self$createEntryFromContent] Accession numbers: 164975.
biodb.TRACE[2025-03-15 16:02:25.174][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:25.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:25.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:25.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:25.183][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:25.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:25.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:25.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:25.186][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:25.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:25.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:25.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:25.189][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:25.189][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:25.190][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:25.195][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:25.195][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:25.196][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:25.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:25.198][private$loadEntries] Creating entries from ids [1]: "164994".
biodb.DEBUG[2025-03-15 16:02:25.199][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:02:25.200][cch$loadFileContent] Trying to load 1 files from cache: [1]: "164994".
biodb.TRACE[2025-03-15 16:02:25.201][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:02:25.202][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:02:25.203][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:02:25.203][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:02:25.204][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:02:25.205][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:02:25.207][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:25.208][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:25.208][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:25.214][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:25.215][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:25.216][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:25.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:25.217][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164994".
biodb.DEBUG[2025-03-15 16:02:25.219][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:02:25.220][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:02:25.221][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164994".
biodb.TRACE[2025-03-15 16:02:25.578][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164994).
biodb.DEBUG[2025-03-15 16:02:25.936][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:02:25.938][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c2789f33696a1a62a1d6cd81e3041cd1.content"
biodb.TRACE[2025-03-15 16:02:25.941][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c2789f33696a1a62a1d6cd81e3041cd1.request"
biodb.TRACE[2025-03-15 16:02:25.943][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/164994.xml"
biodb.DEBUG[2025-03-15 16:02:25.945][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:02:25.946][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:02:25.949][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:02:25.950][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:25.951][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:25.952][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:25.957][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:25.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:25.959][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:25.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:25.961][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:25.962][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:25.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:25.968][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:25.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:25.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:25.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:25.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:25.972][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:02:25.973][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:02:25.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:25.975][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:25.976][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:02:25.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:02:25.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:25.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:25.979][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:25.980][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:25.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:25.982][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:25.983][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:25.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:25.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:25.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:25.986][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:25.987][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:25.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:25.989][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:25.990][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:25.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:25.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:25.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:25.993][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:25.994][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:25.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:25.996][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:25.997][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:25.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:25.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:25.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.000][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:26.001][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:26.002][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.002][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.003][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:02:26.004][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:26.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.006][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.007][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:02:26.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:26.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.015][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:26.016][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:26.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.018][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.019][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:26.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:26.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.022][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:26.023][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:26.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.024][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.026][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:26.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:26.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.035][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:02:26.036][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:02:26.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.038][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.039][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:02:26.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:02:26.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.042][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:02:26.043][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:02:26.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.044][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.045][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:02:26.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:02:26.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.048][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:26.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:26.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.051][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:26.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:26.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:26.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:26.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.058][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:26.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:26.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:26.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:26.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:26.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:26.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:26.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:26.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:26.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:26.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.073][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:26.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:26.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:26.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:26.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:26.084][self$createEntryFromContent] Accession numbers: 164994.
biodb.TRACE[2025-03-15 16:02:26.085][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:26.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:26.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.088][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:26.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:26.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.092][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:26.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:26.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:26.099][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:26.100][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:26.101][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:26.105][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:26.106][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:26.107][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:26.108][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:26.109][private$loadEntries] Creating entries from ids [1]: "169251".
biodb.DEBUG[2025-03-15 16:02:26.109][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:02:26.111][cch$loadFileContent] Trying to load 1 files from cache: [1]: "169251".
biodb.TRACE[2025-03-15 16:02:26.112][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:02:26.113][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:02:26.114][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:02:26.114][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:02:26.115][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:02:26.116][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:02:26.118][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:26.119][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:26.120][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:26.125][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:26.125][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:26.126][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:26.127][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:26.128][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169251".
biodb.DEBUG[2025-03-15 16:02:26.130][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:02:26.131][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:02:26.132][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169251".
biodb.TRACE[2025-03-15 16:02:26.493][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169251).
biodb.DEBUG[2025-03-15 16:02:26.856][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:02:26.858][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/06c85ce8d5c9a410c27ad425a575abe7.content"
biodb.TRACE[2025-03-15 16:02:26.864][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/06c85ce8d5c9a410c27ad425a575abe7.request"
biodb.TRACE[2025-03-15 16:02:26.866][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169251.xml"
biodb.DEBUG[2025-03-15 16:02:26.868][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:02:26.869][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:02:26.870][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:02:26.871][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:26.872][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:26.872][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:26.877][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:26.878][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:26.879][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:26.879][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:26.881][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:26.882][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:26.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.884][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:26.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:26.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.888][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:02:26.888][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:02:26.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.890][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.891][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:02:26.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:02:26.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.894][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:26.895][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:26.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.896][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.897][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:26.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:26.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.900][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:26.901][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:26.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.903][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.904][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:26.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:26.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.907][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:26.908][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:26.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.910][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.911][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:26.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:26.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.914][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:26.915][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:26.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.930][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.931][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:02:26.932][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:26.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.934][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.935][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:02:26.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:26.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.938][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:26.939][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:26.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.941][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.942][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:26.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:26.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.947][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:26.950][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:26.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.952][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.953][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:26.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:26.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.956][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:02:26.956][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:02:26.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.958][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.959][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:02:26.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:02:26.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.962][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:02:26.962][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:02:26.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.964][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.965][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:02:26.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:02:26.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.968][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:26.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:26.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.971][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:26.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:26.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:26.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:26.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.977][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:26.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:26.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:26.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:26.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:26.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:26.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:26.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:26.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:26.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:26.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:26.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:26.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:26.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:26.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:26.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:26.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:26.999][self$createEntryFromContent] Accession numbers: 169251.
biodb.TRACE[2025-03-15 16:02:27.000][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:27.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:27.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.003][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:27.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:27.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.006][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:27.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:27.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:27.010][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:27.010][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:27.011][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:27.016][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:27.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:27.018][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:27.022][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:27.023][private$loadEntries] Creating entries from ids [1]: "224261".
biodb.DEBUG[2025-03-15 16:02:27.024][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:02:27.025][cch$loadFileContent] Trying to load 1 files from cache: [1]: "224261".
biodb.TRACE[2025-03-15 16:02:27.026][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:02:27.027][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:02:27.028][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:02:27.028][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:02:27.030][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:02:27.030][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:02:27.032][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:27.033][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:27.034][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:27.044][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:27.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:27.046][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:27.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:27.047][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=224261".
biodb.DEBUG[2025-03-15 16:02:27.050][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:02:27.050][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:02:27.051][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=224261".
biodb.TRACE[2025-03-15 16:02:27.426][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=224261).
biodb.DEBUG[2025-03-15 16:02:27.785][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:02:27.787][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7ba99c29fa5d3888a543698650c3997e.content"
biodb.TRACE[2025-03-15 16:02:27.790][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7ba99c29fa5d3888a543698650c3997e.request"
biodb.TRACE[2025-03-15 16:02:27.792][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/224261.xml"
biodb.DEBUG[2025-03-15 16:02:27.793][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:02:27.794][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:02:27.795][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:02:27.796][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:27.797][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:27.798][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:27.803][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:27.803][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:27.804][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:27.805][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:27.807][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:27.808][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:27.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.809][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:27.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:27.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.813][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:02:27.814][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:02:27.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.816][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.817][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:02:27.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:02:27.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.821][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:27.822][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:27.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.823][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.824][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:27.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:27.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.828][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:27.829][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:27.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.831][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.832][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:27.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:27.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.835][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:27.836][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:27.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.838][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.839][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:27.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:27.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.843][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:27.844][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:27.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.845][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.847][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:02:27.847][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:27.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.849][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.850][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:02:27.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:27.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.854][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:27.855][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:27.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.856][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.858][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:27.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:27.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.861][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:27.862][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:27.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.864][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.865][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:27.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:27.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.868][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:02:27.869][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:02:27.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.871][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.876][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:02:27.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:02:27.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.879][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:02:27.880][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:02:27.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.882][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.883][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:02:27.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:02:27.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.886][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:27.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:27.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.891][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:27.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:27.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:27.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:27.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.901][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:27.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:27.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:27.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:27.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:27.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:27.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:27.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:27.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:27.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:27.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:27.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:27.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:27.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:27.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:27.923][self$createEntryFromContent] Accession numbers: 224261.
biodb.TRACE[2025-03-15 16:02:27.924][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:27.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:27.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.927][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:27.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:27.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:27.931][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:27.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:27.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:27.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:27.935][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:02:27.937][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:02:27.938][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:02:27.940][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-03-15 16:02:28.308][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-03-15 16:02:28.678][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:02:28.679][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content"
biodb.TRACE[2025-03-15 16:02:28.683][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.request"
biodb.DEBUG[2025-03-15 16:02:28.685][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:28.686][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:28.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:28.691][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:28.692][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:28.693][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:28.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:28.694][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:28.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:28.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.698][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:28.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:28.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:28.701][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:28.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:28.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:28.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:28.704][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:28.705][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:28.706][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:28.720][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:28.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:28.722][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:28.723][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:28.723][private$loadEntries] Creating entries from ids [1]: "71954".
biodb.DEBUG[2025-03-15 16:02:28.724][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:02:28.726][cch$loadFileContent] Trying to load 1 files from cache: [1]: "71954".
biodb.TRACE[2025-03-15 16:02:28.727][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:02:28.728][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:02:28.729][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:02:28.729][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:02:28.730][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:02:28.731][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:02:28.733][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:28.734][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:28.735][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:28.739][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:28.740][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:28.741][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:28.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:28.743][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71954".
biodb.DEBUG[2025-03-15 16:02:28.745][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:02:28.746][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:02:28.747][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71954".
biodb.TRACE[2025-03-15 16:02:29.104][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71954).
biodb.DEBUG[2025-03-15 16:02:29.466][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:02:29.468][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58f24f0de3d9b6c69a2b349522c5c9b3.content"
biodb.TRACE[2025-03-15 16:02:29.471][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58f24f0de3d9b6c69a2b349522c5c9b3.request"
biodb.TRACE[2025-03-15 16:02:29.473][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/71954.xml"
biodb.DEBUG[2025-03-15 16:02:29.474][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:02:29.475][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:02:29.476][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:02:29.477][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:29.477][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:29.478][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:29.482][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:29.483][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:29.484][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:29.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:29.486][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:29.487][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:29.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:29.488][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:29.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:29.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:29.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:29.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:29.492][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:02:29.493][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:02:29.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:29.494][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:29.495][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:02:29.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:02:29.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:29.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:29.498][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:29.499][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:29.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:29.500][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:29.501][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:29.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:29.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:29.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:29.504][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:29.505][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:29.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:29.506][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:29.507][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:29.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:29.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:29.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:29.510][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:29.511][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:29.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:29.512][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:29.513][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:29.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:29.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:29.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:29.516][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:29.517][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:29.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:29.518][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:29.519][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:02:29.520][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:29.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:29.521][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:29.522][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:02:29.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:29.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:29.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:29.525][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:29.526][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:29.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:29.527][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:29.528][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:29.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:29.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:29.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:29.532][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:29.533][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:29.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:29.534][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:29.535][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:29.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:29.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:29.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:29.538][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:02:29.539][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:02:29.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:29.540][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:29.541][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:02:29.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:02:29.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:29.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:29.544][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:02:29.545][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:02:29.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:29.546][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:29.547][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:02:29.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:02:29.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:29.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:29.550][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:29.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:29.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:29.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:29.553][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:29.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:29.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:29.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:29.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:29.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:29.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:29.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:29.562][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:29.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:29.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:29.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:29.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:29.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:29.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:29.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:29.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:29.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:29.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:29.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:29.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:29.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:29.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:29.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:29.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:29.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:29.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:29.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:29.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:29.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:29.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:29.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:29.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:29.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:29.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:29.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:29.584][self$createEntryFromContent] Accession numbers: 71954.
biodb.TRACE[2025-03-15 16:02:29.584][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:29.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:29.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:29.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:29.588][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:29.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:29.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:29.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:29.591][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:29.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:29.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:29.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:29.594][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:29.595][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:29.595][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:29.600][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:29.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:29.601][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:29.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:29.603][private$loadEntries] Creating entries from ids [1]: "197612".
biodb.DEBUG[2025-03-15 16:02:29.603][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:02:29.605][cch$loadFileContent] Trying to load 1 files from cache: [1]: "197612".
biodb.TRACE[2025-03-15 16:02:29.606][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:02:29.607][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:02:29.608][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:02:29.608][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:02:29.609][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:02:29.610][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:02:29.612][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:29.613][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:29.613][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:29.618][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:29.619][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:29.619][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:29.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:29.621][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=197612".
biodb.DEBUG[2025-03-15 16:02:29.623][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:02:29.624][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:02:29.625][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=197612".
biodb.TRACE[2025-03-15 16:02:29.999][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=197612).
biodb.DEBUG[2025-03-15 16:02:30.349][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:02:30.351][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d602b140c80212c04a1a2ba98ef7dc4f.content"
biodb.TRACE[2025-03-15 16:02:30.353][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d602b140c80212c04a1a2ba98ef7dc4f.request"
biodb.TRACE[2025-03-15 16:02:30.355][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/197612.xml"
biodb.DEBUG[2025-03-15 16:02:30.357][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:02:30.357][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:02:30.359][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:02:30.360][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:30.361][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:30.361][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:30.366][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:30.367][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:30.367][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:30.368][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:30.370][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:30.371][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:30.371][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.372][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:30.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:30.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.376][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:02:30.377][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:02:30.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.378][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.379][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:02:30.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:02:30.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.382][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:30.383][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:30.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.384][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.385][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:02:30.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:02:30.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.388][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:30.389][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:30.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.390][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.391][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:02:30.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:02:30.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.394][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:30.395][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:30.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.397][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.398][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:02:30.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:02:30.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.401][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:30.402][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:02:30.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.403][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.404][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:02:30.405][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:30.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.406][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.407][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:02:30.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:30.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.411][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:30.411][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:30.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.413][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.414][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:30.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:30.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.417][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:30.418][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:30.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.419][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.421][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:02:30.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:02:30.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.424][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:02:30.424][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:02:30.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.426][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.427][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:02:30.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:02:30.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.430][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:02:30.431][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:02:30.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.432][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.433][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:02:30.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:02:30.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.446][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.449][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.452][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:30.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:30.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.455][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:30.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:30.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:30.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:30.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:30.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:30.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:30.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:30.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:30.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:30.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:02:30.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:02:30.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:30.475][self$createEntryFromContent] Accession numbers: 197612.
biodb.TRACE[2025-03-15 16:02:30.476][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:30.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:30.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.479][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:30.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:30.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.482][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:30.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:02:30.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:30.485][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:02:30.486][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:30.487][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:30.487][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:30.492][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:30.493][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:30.493][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:30.494][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:30.495][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.501][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:02:30.501][private$selectFields]
biodb.TRACE[2025-03-15 16:02:30.502][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:30.503][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:30.504][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:02:30.504][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.505][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.506][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.507][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.508][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.509][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.510][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:02:30.511][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:02:30.512][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.512][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.514][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.515][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:02:30.515][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.521][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.524][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-03-15 16:02:30.525][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:30.526][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:30.526][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:30.531][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:30.531][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:30.532][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:30.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:30.534][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.537][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.540][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:02:30.540][private$selectFields]
biodb.TRACE[2025-03-15 16:02:30.541][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:30.542][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:30.542][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:02:30.543][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.544][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.545][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.546][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.547][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.548][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.549][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:02:30.550][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:02:30.550][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.551][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.552][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.553][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:02:30.554][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.557][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.560][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.563][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-03-15 16:02:30.564][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:30.564][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:30.565][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:30.570][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:30.571][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:30.571][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:30.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:30.573][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.576][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.579][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:02:30.580][private$selectFields]
biodb.TRACE[2025-03-15 16:02:30.580][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:30.581][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:30.582][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:02:30.582][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.583][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.585][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.585][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.586][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.587][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.588][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:02:30.589][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:02:30.590][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.590][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.592][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.593][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:02:30.593][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.596][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.599][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.602][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-03-15 16:02:30.603][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:02:30.604][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-03-15 16:02:30.611][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:30.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:30.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.614][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:30.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:30.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.617][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:30.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:30.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.620][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:30.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:30.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.624][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:30.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:30.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.627][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:30.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:30.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.629][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:30.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:30.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.632][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:30.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:30.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.635][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:30.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:30.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.638][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:30.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:30.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.641][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:30.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:30.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.644][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:30.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:30.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:30.685][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:30.686][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:30.687][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:30.692][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:30.693][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:30.693][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:30.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:30.700][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:02:30.703][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:02:30.704][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-03-15 16:02:30.704][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:02:30.709][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-03-15 16:02:30.711][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:02:30.713][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:02:30.714][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-03-15 16:02:30.715][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:02:30.717][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-03-15 16:02:30.718][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:30.719][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:30.720][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:30.724][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:30.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:30.725][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:30.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:30.727][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:30.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:30.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.729][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:30.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:30.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.732][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:30.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:30.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:30.735][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:30.736][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:30.736][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:30.741][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:30.742][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:30.742][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:30.743][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:30.744][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:30.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:30.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.747][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:30.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:30.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.749][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:30.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:30.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:30.752][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:30.753][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:30.754][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:30.758][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:30.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:30.759][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:30.760][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:30.761][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:30.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:30.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.764][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:30.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:30.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.767][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:30.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:30.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:30.770][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:02:30.771][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:30.772][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:30.773][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:30.777][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:30.778][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:30.779][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:30.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:30.780][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.783][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.786][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:02:30.787][private$selectFields]
biodb.TRACE[2025-03-15 16:02:30.787][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:30.788][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:30.789][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:02:30.790][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.790][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.792][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.793][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.793][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.795][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.796][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:02:30.797][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:02:30.797][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.798][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.800][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.800][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:02:30.801][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.804][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.807][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.811][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-03-15 16:02:30.811][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:30.812][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:30.813][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:30.817][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:30.818][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:30.819][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:30.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:30.829][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.833][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.851][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:02:30.852][private$selectFields]
biodb.TRACE[2025-03-15 16:02:30.853][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:30.854][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:30.855][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:02:30.856][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.856][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.858][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.859][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.860][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.861][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.862][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:02:30.870][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:02:30.871][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.872][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.873][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.874][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:02:30.875][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.878][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.881][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.884][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-03-15 16:02:30.885][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:30.885][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:30.886][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:30.891][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:30.891][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:30.892][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:30.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:30.893][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.896][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.899][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:02:30.900][private$selectFields]
biodb.TRACE[2025-03-15 16:02:30.901][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:02:30.901][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:02:30.902][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:02:30.903][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.904][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.905][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.906][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.907][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.908][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.909][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:02:30.909][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:02:30.910][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.911][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.912][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.913][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:02:30.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.917][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:02:30.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:30.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:30.923][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-03-15 16:02:30.924][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:02:30.924][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:02:30.926][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:30.927][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:30.928][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:30.932][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:30.933][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:30.933][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:30.934][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:30.936][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:02:30.939][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:02:30.940][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:02:30.941][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-03-15 16:02:31.291][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-03-15 16:02:31.651][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:02:31.653][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content"
biodb.TRACE[2025-03-15 16:02:31.656][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.request"
biodb.DEBUG[2025-03-15 16:02:31.658][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:31.659][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:31.660][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:31.664][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:31.665][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:31.666][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:31.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:02:31.667][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:31.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:31.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.679][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:31.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:31.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:02:31.685][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:31.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:02:31.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:02:31.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:02:31.688][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:31.689][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:31.690][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:31.694][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:31.695][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:31.695][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:31.696][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:31.697][private$loadEntries] Creating entries from ids [1]: "91601".
biodb.DEBUG[2025-03-15 16:02:31.698][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:02:31.699][cch$loadFileContent] Trying to load 1 files from cache: [1]: "91601".
biodb.TRACE[2025-03-15 16:02:31.700][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:02:31.701][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:02:31.701][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:02:31.702][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:02:31.703][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:02:31.704][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:02:31.705][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:02:31.706][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:02:31.707][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:02:31.711][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:02:31.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:02:31.712][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:02:31.713][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:02:31.714][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=91601".
biodb.DEBUG[2025-03-15 16:02:31.716][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:02:31.717][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:02:31.718][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=91601".
biodb.TRACE[2025-03-15 16:03:31.862][doesRCurlRequestUrlExist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=91601 does not exist.
biodb.TRACE[2025-03-15 16:03:31.863][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-03-15 16:03:31.864][getUrlRequestResult] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=91601" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-03-15 16:03:31.864][getBaseUrlRequestResult] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=91601).
biodb.DEBUG[2025-03-15 16:03:32.230][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:03:32.232][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aa7bc0b3048e5fb322307698a3f56fa6.content"
biodb.TRACE[2025-03-15 16:03:32.234][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aa7bc0b3048e5fb322307698a3f56fa6.request"
biodb.TRACE[2025-03-15 16:03:32.237][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/91601.xml"
biodb.DEBUG[2025-03-15 16:03:32.238][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:03:32.239][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:03:32.240][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:03:32.241][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:32.241][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:32.242][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:32.247][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:32.247][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:32.248][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:32.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:32.250][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:32.251][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:32.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:32.252][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:32.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:32.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:32.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:32.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:32.257][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:03:32.257][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:03:32.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:32.259][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:32.260][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:03:32.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:03:32.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:32.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:32.263][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:03:32.263][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:03:32.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:32.265][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:32.266][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:03:32.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:03:32.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:32.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:32.269][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:03:32.270][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:03:32.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:32.272][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:32.273][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:03:32.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:03:32.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:32.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:32.276][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:03:32.276][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:03:32.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:32.278][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:32.279][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:03:32.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:03:32.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:32.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:32.282][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:03:32.283][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:03:32.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:32.285][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:32.286][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:03:32.286][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:32.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:32.288][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:32.289][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:03:32.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:32.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:32.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:32.292][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:32.293][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:32.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:32.294][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:32.295][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:32.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:32.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:32.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:32.298][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:03:32.299][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:03:32.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:32.300][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:32.301][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:03:32.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:03:32.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:32.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:32.304][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:03:32.305][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:03:32.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:32.306][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:32.307][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:03:32.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:03:32.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:32.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:32.310][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:03:32.311][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:03:32.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:32.313][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:32.313][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:03:32.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:03:32.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:32.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:32.317][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:32.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:32.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:32.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:32.320][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:32.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:32.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:32.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:32.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:32.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:32.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:32.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:32.327][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:32.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:32.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:32.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:32.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:32.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:32.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:32.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:32.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:32.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:32.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:32.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:32.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:32.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:32.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:32.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:32.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:32.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:32.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:32.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:32.342][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:32.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:32.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:32.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:32.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:32.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:32.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:32.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:32.348][self$createEntryFromContent] Accession numbers: 91601.
biodb.TRACE[2025-03-15 16:03:32.349][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:32.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:32.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:32.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:32.352][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:32.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:32.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:32.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:32.355][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:32.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:32.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:32.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:32.358][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:32.358][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:32.359][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:32.364][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:32.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:32.365][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:32.366][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:03:32.367][private$loadEntries] Creating entries from ids [1]: "95147".
biodb.DEBUG[2025-03-15 16:03:32.367][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:03:32.369][cch$loadFileContent] Trying to load 1 files from cache: [1]: "95147".
biodb.TRACE[2025-03-15 16:03:32.370][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:03:32.371][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:03:32.372][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:03:32.373][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:03:32.373][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:03:32.374][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:03:32.376][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:32.377][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:32.377][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:32.382][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:32.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:32.383][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:32.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:03:32.385][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=95147".
biodb.DEBUG[2025-03-15 16:03:32.387][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:03:32.388][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:03:32.389][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=95147".
biodb.TRACE[2025-03-15 16:03:32.752][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=95147).
biodb.DEBUG[2025-03-15 16:03:33.118][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:03:33.120][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5dbc153d74635342b8ea0e83790c39e.content"
biodb.TRACE[2025-03-15 16:03:33.123][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5dbc153d74635342b8ea0e83790c39e.request"
biodb.TRACE[2025-03-15 16:03:33.126][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/95147.xml"
biodb.DEBUG[2025-03-15 16:03:33.127][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:03:33.128][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:03:33.129][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:03:33.130][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:33.131][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:33.132][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:33.136][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:33.137][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:33.138][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:33.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:33.140][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:33.141][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:33.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:33.142][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:33.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:33.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:33.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:33.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:33.146][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:03:33.147][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:03:33.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:33.148][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:33.149][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:03:33.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:03:33.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:33.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:33.153][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:03:33.153][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:03:33.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:33.155][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:33.156][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:03:33.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:03:33.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:33.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:33.159][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:03:33.160][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:03:33.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:33.161][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:33.162][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:03:33.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:03:33.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:33.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:33.165][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:03:33.166][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:03:33.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:33.167][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:33.168][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:03:33.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:03:33.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:33.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:33.171][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:03:33.172][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:03:33.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:33.174][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:33.175][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:03:33.175][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:33.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:33.177][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:33.178][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:03:33.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:33.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:33.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:33.181][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:33.182][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:33.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:33.183][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:33.184][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:33.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:33.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:33.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:33.187][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:03:33.188][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:03:33.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:33.189][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:33.190][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:03:33.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:03:33.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:33.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:33.193][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:03:33.199][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:03:33.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:33.204][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:33.205][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:03:33.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:03:33.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:33.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:33.208][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:03:33.209][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:03:33.210][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:33.210][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:33.211][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:03:33.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:03:33.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:33.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:33.214][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:33.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:33.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:33.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:33.217][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:33.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:33.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:33.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:33.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:33.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:33.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:33.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:33.223][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:33.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:33.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:33.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:33.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:33.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:33.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:33.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:33.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:33.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:33.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:33.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:33.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:33.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:33.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:33.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:33.234][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:33.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:33.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:33.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:33.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:33.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:33.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:33.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:33.240][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:33.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:33.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:33.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:33.243][self$createEntryFromContent] Accession numbers: 95147.
biodb.TRACE[2025-03-15 16:03:33.244][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:33.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:33.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:33.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:33.247][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:33.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:33.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:33.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:33.250][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:33.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:33.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:33.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:33.253][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:03:33.254][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:33.255][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:33.256][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:33.260][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:33.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:33.262][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:33.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:33.264][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:33.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:33.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:33.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:33.267][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:33.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:33.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:33.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:33.269][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:33.270][private$selectFields]
biodb.TRACE[2025-03-15 16:03:33.271][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:03:33.272][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:03:33.272][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:33.273][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:33.274][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:33.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:33.275][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:33.276][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:33.277][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:33.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:33.278][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:33.279][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:33.279][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:33.280][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:33.281][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:33.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:33.282][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:33.283][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:03:33.284][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:33.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:33.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:33.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:33.287][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:33.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:33.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:33.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:33.290][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:33.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:33.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:33.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:33.293][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-03-15 16:03:33.294][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:33.295][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:33.296][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:33.300][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:33.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:33.302][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:33.302][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:33.303][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:33.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:33.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:33.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:33.306][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:33.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:33.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:33.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:33.309][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:33.310][private$selectFields]
biodb.TRACE[2025-03-15 16:03:33.311][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:03:33.312][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:03:33.312][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:33.313][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:33.314][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:33.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:33.316][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:33.316][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:33.317][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:33.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:33.319][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:33.319][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:33.320][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:33.321][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:33.322][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:33.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:33.323][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:33.324][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:03:33.325][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:33.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:33.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:33.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:33.328][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:33.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:33.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:33.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:33.330][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:33.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:33.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:33.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:33.334][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-03-15 16:03:33.335][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:33.335][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:33.336][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:33.341][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:33.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:33.342][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:33.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:33.344][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:33.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:33.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:33.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:33.347][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:33.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:33.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:33.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:33.350][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:33.350][private$selectFields]
biodb.TRACE[2025-03-15 16:03:33.351][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:03:33.352][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:03:33.352][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:33.353][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:33.354][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:33.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:33.355][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:33.356][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:33.357][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:33.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:33.358][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:33.359][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:33.360][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:33.360][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:33.361][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:33.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:33.363][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:33.363][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:03:33.364][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:33.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:33.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:33.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:33.367][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:33.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:33.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:33.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:33.370][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:33.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:33.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:33.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:33.373][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-03-15 16:03:33.374][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:03:33.375][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:03:33.376][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:33.377][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:33.377][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:33.382][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:33.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:33.384][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:33.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:03:33.387][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:03:33.389][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:03:33.390][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:03:33.392][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-03-15 16:03:33.763][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-03-15 16:03:34.131][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:03:34.133][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content"
biodb.TRACE[2025-03-15 16:03:34.136][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.request"
biodb.DEBUG[2025-03-15 16:03:34.139][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:34.139][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:34.140][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:34.145][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:34.146][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:34.146][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:34.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:03:34.148][private$loadEntries] Creating entries from ids [1]: "636".
biodb.DEBUG[2025-03-15 16:03:34.149][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:03:34.150][cch$loadFileContent] Trying to load 1 files from cache: [1]: "636".
biodb.TRACE[2025-03-15 16:03:34.151][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:03:34.152][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:03:34.152][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:03:34.153][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:03:34.154][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:03:34.155][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:03:34.157][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:34.157][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:34.158][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:34.163][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:34.163][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:34.164][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:34.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:03:34.166][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=636".
biodb.DEBUG[2025-03-15 16:03:34.168][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:03:34.169][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:03:34.170][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=636".
biodb.TRACE[2025-03-15 16:03:34.529][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=636).
biodb.DEBUG[2025-03-15 16:03:34.906][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:03:34.908][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ccb008951a89970d7f0e2dfe6ae3860d.content"
biodb.TRACE[2025-03-15 16:03:34.911][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ccb008951a89970d7f0e2dfe6ae3860d.request"
biodb.TRACE[2025-03-15 16:03:34.914][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/636.xml"
biodb.DEBUG[2025-03-15 16:03:34.916][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:03:34.917][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:03:34.917][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:03:34.919][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:34.920][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:34.921][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:34.926][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:34.927][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:34.928][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:34.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:34.930][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:34.931][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:34.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:34.933][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:34.934][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:34.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:34.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:34.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:34.938][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:03:34.939][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:03:34.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:34.940][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:34.941][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:03:34.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:03:34.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:34.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:34.945][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:03:34.946][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:03:34.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:34.947][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:34.949][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:03:34.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:03:34.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:34.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:34.952][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:03:34.953][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:03:34.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:34.965][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:34.967][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:03:34.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:03:34.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:34.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:34.971][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:03:34.972][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:03:34.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:34.973][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:34.974][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:03:34.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:03:34.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:34.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:34.978][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:03:34.979][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:03:34.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:34.980][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:34.981][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:03:34.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:03:34.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:34.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:34.985][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:03:34.986][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:34.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:34.988][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:34.989][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:03:34.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:34.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:34.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:34.992][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:34.993][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:34.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:34.995][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:34.996][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:34.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:34.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:34.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:35.000][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:03:35.001][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:03:35.002][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:35.003][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:35.004][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:03:35.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:03:35.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:35.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:35.007][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:03:35.009][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:03:35.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:35.010][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:35.011][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:03:35.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:03:35.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:35.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:35.015][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:03:35.016][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:03:35.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:35.017][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:35.018][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:03:35.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:03:35.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:35.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:35.022][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:35.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:35.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:35.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:35.026][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:35.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:35.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:35.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:35.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:35.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:35.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:35.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:35.032][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:35.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:35.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:35.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:35.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:35.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:35.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:35.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:35.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:35.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:35.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:35.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:35.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:35.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:35.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:35.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:35.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:35.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:35.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:35.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:35.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:35.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:35.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:35.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:35.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:35.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:35.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:35.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:35.056][self$createEntryFromContent] Accession numbers: 636.
biodb.TRACE[2025-03-15 16:03:35.057][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:35.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:35.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:35.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:35.061][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:35.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:35.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:35.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:35.065][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:35.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:35.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:35.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:35.069][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:35.069][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:35.070][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:35.076][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:35.077][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:35.078][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:35.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:03:35.079][private$loadEntries] Creating entries from ids [1]: "64199".
biodb.DEBUG[2025-03-15 16:03:35.080][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:03:35.082][cch$loadFileContent] Trying to load 1 files from cache: [1]: "64199".
biodb.TRACE[2025-03-15 16:03:35.083][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:03:35.084][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:03:35.085][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:03:35.086][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:03:35.087][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:03:35.088][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:03:35.090][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:35.091][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:35.092][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:35.097][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:35.098][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:35.099][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:35.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:03:35.100][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64199".
biodb.DEBUG[2025-03-15 16:03:35.103][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:03:35.104][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:03:35.105][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64199".
biodb.TRACE[2025-03-15 16:03:35.464][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64199).
biodb.DEBUG[2025-03-15 16:03:35.862][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:03:35.864][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a31cc2b07404761abdda19d4ffeaa880.content"
biodb.TRACE[2025-03-15 16:03:35.868][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a31cc2b07404761abdda19d4ffeaa880.request"
biodb.TRACE[2025-03-15 16:03:35.870][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64199.xml"
biodb.DEBUG[2025-03-15 16:03:35.872][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:03:35.873][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:03:35.874][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:03:35.876][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:35.877][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:35.877][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:35.883][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:35.884][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:35.884][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:35.885][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:35.887][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:35.888][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:35.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:35.890][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:35.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:35.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:35.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:35.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:35.895][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:03:35.896][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:03:35.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:35.898][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:35.899][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:03:35.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:03:35.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:35.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:35.902][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:03:35.903][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:03:35.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:35.905][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:35.906][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:03:35.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:03:35.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:35.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:35.910][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:03:35.910][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:03:35.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:35.912][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:35.913][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:03:35.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:03:35.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:35.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:35.917][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:03:35.918][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:03:35.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:35.919][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:35.920][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:03:35.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:03:35.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:35.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:35.924][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:03:35.925][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:03:35.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:35.927][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:35.928][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:03:35.929][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:35.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:35.930][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:35.932][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:03:35.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:35.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:35.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:35.936][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:35.936][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:35.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:35.938][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:35.939][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:35.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:35.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:35.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:35.943][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:03:35.944][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:03:35.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:35.945][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:35.946][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:03:35.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:03:35.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:35.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:35.950][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:03:35.951][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:03:35.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:35.953][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:35.954][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:03:35.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:03:35.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:35.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:35.957][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:03:35.958][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:03:35.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:35.960][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:35.961][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:03:35.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:03:35.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:35.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:35.964][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:35.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:35.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:35.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:35.968][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:35.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:35.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:35.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:35.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:35.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:35.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:35.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:35.974][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:35.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:35.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:35.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:35.978][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:35.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:35.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:35.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:35.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:35.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:35.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:35.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:35.985][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:35.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:35.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:35.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:35.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:35.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:35.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:35.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:35.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:35.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:35.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:35.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:35.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:35.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:35.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:35.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:36.000][self$createEntryFromContent] Accession numbers: 64199.
biodb.TRACE[2025-03-15 16:03:36.001][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:36.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:36.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:36.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:36.004][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:36.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:36.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:36.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:36.008][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:36.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:36.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:36.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:36.011][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:36.012][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:36.013][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:36.018][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:36.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:36.019][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:36.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:03:36.021][private$loadEntries] Creating entries from ids [1]: "65648".
biodb.DEBUG[2025-03-15 16:03:36.022][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:03:36.023][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65648".
biodb.TRACE[2025-03-15 16:03:36.025][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:03:36.025][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:03:36.026][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:03:36.027][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:03:36.028][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:03:36.029][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:03:36.031][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:36.032][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:36.033][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:36.046][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:36.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:36.048][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:36.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:03:36.050][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65648".
biodb.DEBUG[2025-03-15 16:03:36.053][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:03:36.054][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:03:36.055][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65648".
biodb.TRACE[2025-03-15 16:03:36.408][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65648).
biodb.DEBUG[2025-03-15 16:03:36.783][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:03:36.785][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4176d017d73a3b7cdd77f889aa9b1b1d.content"
biodb.TRACE[2025-03-15 16:03:36.787][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4176d017d73a3b7cdd77f889aa9b1b1d.request"
biodb.TRACE[2025-03-15 16:03:36.790][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65648.xml"
biodb.DEBUG[2025-03-15 16:03:36.791][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:03:36.792][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:03:36.793][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:03:36.795][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:36.795][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:36.796][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:36.802][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:36.803][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:36.803][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:36.804][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:36.806][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:36.807][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:36.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:36.808][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:36.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:36.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:36.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:36.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:36.813][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:03:36.814][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:03:36.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:36.815][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:36.816][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:03:36.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:03:36.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:36.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:36.820][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:03:36.821][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:03:36.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:36.822][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:36.823][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:03:36.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:03:36.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:36.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:36.827][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:03:36.828][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:03:36.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:36.830][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:36.831][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:03:36.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:03:36.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:36.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:36.835][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:03:36.835][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:03:36.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:36.837][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:36.838][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:03:36.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:03:36.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:36.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:36.841][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:03:36.842][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:03:36.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:36.844][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:36.845][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:03:36.846][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:36.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:36.847][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:36.848][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:03:36.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:36.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:36.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:36.852][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:36.853][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:36.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:36.855][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:36.856][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:36.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:36.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:36.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:36.859][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:03:36.860][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:03:36.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:36.862][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:36.863][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:03:36.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:03:36.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:36.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:36.866][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:03:36.867][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:03:36.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:36.869][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:36.870][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:03:36.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:03:36.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:36.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:36.874][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:03:36.875][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:03:36.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:36.876][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:36.878][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:03:36.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:03:36.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:36.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:36.881][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:36.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:36.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:36.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:36.884][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:36.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:36.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:36.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:36.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:36.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:36.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:36.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:36.891][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:36.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:36.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:36.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:36.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:36.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:36.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:36.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:36.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:36.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:36.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:36.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:36.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:36.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:36.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:36.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:36.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:36.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:36.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:36.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:36.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:36.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:36.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:36.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:36.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:36.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:36.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:36.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:36.916][self$createEntryFromContent] Accession numbers: 65648.
biodb.TRACE[2025-03-15 16:03:36.917][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:36.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:36.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:36.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:36.920][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:36.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:36.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:36.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:36.924][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:36.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:36.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:36.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:36.928][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:03:36.929][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:36.930][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:36.931][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:36.936][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:36.937][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:36.938][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:36.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:36.940][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:36.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:36.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:36.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:36.943][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:36.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:36.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:36.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:36.947][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:36.948][private$selectFields]
biodb.TRACE[2025-03-15 16:03:36.949][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:03:36.949][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:03:36.950][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:36.951][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:36.952][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:36.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:36.954][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:36.955][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:36.955][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:36.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:36.957][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:36.958][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:36.959][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:36.960][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:36.961][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:36.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:36.963][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:36.964][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:03:36.965][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:36.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:36.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:36.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:36.968][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:36.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:36.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:36.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:36.972][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:36.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:36.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:36.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:36.975][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-03-15 16:03:36.976][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:36.977][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:36.978][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:36.983][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:36.984][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:36.985][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:36.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:36.987][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:36.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:36.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:36.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:36.990][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:36.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:36.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:36.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:36.994][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:36.994][private$selectFields]
biodb.TRACE[2025-03-15 16:03:36.995][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:03:36.996][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:03:36.997][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:36.998][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:36.999][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:36.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.000][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.001][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.002][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.002][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.004][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.005][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:37.005][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:37.006][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.007][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.009][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.010][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:03:37.011][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.014][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.018][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.022][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-03-15 16:03:37.022][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:37.023][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:37.024][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:37.029][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:37.030][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:37.031][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:37.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:37.033][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.036][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.040][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:37.040][private$selectFields]
biodb.TRACE[2025-03-15 16:03:37.041][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:03:37.042][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:03:37.043][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:37.044][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.045][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.046][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.047][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.048][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.050][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.050][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:37.051][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:37.052][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.053][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.055][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.056][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:03:37.057][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.060][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.064][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.068][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2025-03-15 16:03:37.068][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:03:37.069][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-03-15 16:03:37.077][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-03-15 16:03:37.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-03-15 16:03:37.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.081][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-03-15 16:03:37.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-03-15 16:03:37.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.093][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-03-15 16:03:37.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-03-15 16:03:37.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-15 16:03:37.100][biodb::testThat]
biodb.INFO [2025-03-15 16:03:37.101][biodb::testThat] Running test function test_annotateMzValues_ppm_tol (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2025-03-15 16:03:37.102][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-15 16:03:37.102][biodb::testThat]
biodb.TRACE[2025-03-15 16:03:37.105][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-15 16:03:37.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-15 16:03:37.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.108][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-15 16:03:37.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-15 16:03:37.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.112][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-15 16:03:37.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-15 16:03:37.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.116][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.119][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.122][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.126][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.129][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.132][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.136][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.140][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.143][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.146][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.149][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.153][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:37.158][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:37.159][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:37.160][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:37.164][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:37.165][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:37.166][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:37.167][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:03:37.169][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:03:37.172][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:03:37.173][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-03-15 16:03:37.174][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:03:37.175][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-03-15 16:03:37.177][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:37.178][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:37.179][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:37.184][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:37.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:37.185][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:37.186][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:37.188][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.191][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.195][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:37.199][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:03:37.202][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:03:37.203][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-03-15 16:03:37.205][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:03:37.206][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-03-15 16:03:37.208][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:37.209][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:37.209][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:37.214][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:37.215][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:37.216][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:37.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:37.218][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.221][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.224][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:37.228][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:37.228][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:37.229][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:37.234][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:37.235][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:37.236][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:37.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:37.237][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.241][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.244][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:37.248][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:03:37.249][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:37.250][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:37.251][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:37.256][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:37.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:37.258][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:37.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:37.259][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.263][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.267][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:37.267][private$selectFields]
biodb.TRACE[2025-03-15 16:03:37.268][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:03:37.269][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:03:37.270][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:37.271][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.272][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.273][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.274][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.275][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.277][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.277][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:37.278][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:37.279][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.280][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.281][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.282][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:03:37.283][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.287][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.290][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.294][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-03-15 16:03:37.295][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:37.295][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:37.296][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:37.302][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:37.302][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:37.303][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:37.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:37.305][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.308][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.312][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:37.312][private$selectFields]
biodb.TRACE[2025-03-15 16:03:37.313][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:03:37.314][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:03:37.315][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:37.316][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.317][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.318][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.319][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.320][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.322][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.323][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:37.323][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:37.324][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.325][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.327][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.328][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:03:37.329][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.332][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.336][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.340][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-03-15 16:03:37.340][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:37.341][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:37.342][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:37.347][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:37.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:37.349][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:37.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:37.351][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.354][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.358][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:37.359][private$selectFields]
biodb.TRACE[2025-03-15 16:03:37.359][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:03:37.360][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:03:37.361][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:37.362][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.363][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.365][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.365][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.366][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.368][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.369][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:37.370][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:37.370][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.371][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.373][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.373][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:03:37.375][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.378][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.381][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.385][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-03-15 16:03:37.386][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:03:37.387][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:03:37.389][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:37.390][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:37.390][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:37.395][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:37.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:37.397][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:37.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:03:37.401][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:03:37.403][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:03:37.409][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2025-03-15 16:03:37.411][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:03:37.412][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2025-03-15 16:03:37.415][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:37.415][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:37.416][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:37.421][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:37.422][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:37.422][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:37.423][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:37.424][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.428][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.432][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:37.436][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:37.436][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:37.437][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:37.442][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:37.443][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:37.444][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:37.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:37.445][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.449][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.452][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:37.456][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:03:37.459][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:03:37.460][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2025-03-15 16:03:37.461][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:03:37.462][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2025-03-15 16:03:37.464][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:37.465][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:37.466][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:37.471][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:37.471][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:37.472][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:37.473][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:37.474][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.477][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.481][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:37.484][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:37.485][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:37.486][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:37.490][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:37.491][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:37.492][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:37.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:37.494][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.497][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.501][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:37.504][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:37.505][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:37.505][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:37.510][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:37.511][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:37.512][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:37.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:37.514][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.517][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.521][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:37.524][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:03:37.526][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:37.526][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:37.527][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:37.532][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:37.533][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:37.534][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:37.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:37.536][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.539][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.542][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:37.543][private$selectFields]
biodb.TRACE[2025-03-15 16:03:37.544][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:03:37.545][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:03:37.546][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:37.547][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.548][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.549][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.550][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.551][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.553][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.553][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:37.554][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:37.555][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.556][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.558][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.559][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:03:37.560][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.564][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.567][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.571][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-03-15 16:03:37.572][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:37.573][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:37.574][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:37.578][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:37.579][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:37.580][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:37.581][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:37.582][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.585][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.588][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:37.589][private$selectFields]
biodb.TRACE[2025-03-15 16:03:37.590][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:03:37.591][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:03:37.592][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:37.592][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.593][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.595][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.596][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.597][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.598][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.599][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:37.600][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:37.601][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.602][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.603][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.604][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:03:37.605][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.608][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.612][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.616][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-03-15 16:03:37.617][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:37.617][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:37.618][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:37.623][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:37.624][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:37.624][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:37.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:37.626][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.630][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.633][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:37.634][private$selectFields]
biodb.TRACE[2025-03-15 16:03:37.635][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:03:37.636][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:03:37.637][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:37.637][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.638][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.640][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.641][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.642][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.643][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.644][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:37.645][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:37.646][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.647][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.648][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.649][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:03:37.650][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.653][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.657][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:37.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.660][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-03-15 16:03:37.661][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:03:37.662][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:03:37.663][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:37.664][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:37.665][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:37.670][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:37.671][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:37.671][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:37.672][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:03:37.674][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:03:37.677][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:03:37.678][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2025-03-15 16:03:37.679][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:03:37.680][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2025-03-15 16:03:37.682][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:37.683][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:37.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:37.689][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:37.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:37.691][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:37.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:37.692][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.696][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.699][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:37.703][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:37.704][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:37.705][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:37.710][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:37.710][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:37.711][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:37.712][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:37.713][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.716][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.720][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:37.728][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:37.729][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:37.730][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:37.735][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:37.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:37.736][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:37.737][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:37.738][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.742][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:37.745][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:37.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:37.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:37.749][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:03:37.751][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:03:37.752][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:03:37.753][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-03-15 16:03:44.425][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-03-15 16:03:44.968][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:03:44.970][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dd9d19fb78fcc7453eff2e9dd7ba5702.content"
biodb.TRACE[2025-03-15 16:03:44.973][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dd9d19fb78fcc7453eff2e9dd7ba5702.request"
biodb.DEBUG[2025-03-15 16:03:44.977][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:44.978][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:44.979][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:44.983][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:44.984][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:44.985][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:44.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:44.987][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:44.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:44.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:44.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:44.990][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:44.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:44.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:44.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:44.993][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:44.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:44.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:44.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:44.997][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:44.997][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:44.998][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:45.003][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:45.003][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:45.004][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:45.005][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:03:45.006][private$loadEntries] Creating entries from ids [1]: "3017".
biodb.DEBUG[2025-03-15 16:03:45.007][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:03:45.008][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3017".
biodb.TRACE[2025-03-15 16:03:45.009][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:03:45.010][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:03:45.011][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:03:45.012][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:03:45.012][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:03:45.013][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:03:45.015][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:45.016][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:45.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:45.022][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:45.022][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:45.023][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:45.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:03:45.025][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3017".
biodb.DEBUG[2025-03-15 16:03:45.027][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:03:45.028][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:03:45.029][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3017".
biodb.TRACE[2025-03-15 16:03:45.404][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3017).
biodb.DEBUG[2025-03-15 16:03:45.789][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:03:45.791][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a0d2dadbafdef2154bb32b0db7e287ac.content"
biodb.TRACE[2025-03-15 16:03:45.794][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a0d2dadbafdef2154bb32b0db7e287ac.request"
biodb.TRACE[2025-03-15 16:03:45.797][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3017.xml"
biodb.DEBUG[2025-03-15 16:03:45.799][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:03:45.800][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:03:45.801][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:03:45.803][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:45.803][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:45.804][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:45.809][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:45.810][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:45.811][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:45.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:45.813][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:45.814][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:45.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:45.816][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:45.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:45.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:45.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:45.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:45.821][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:03:45.822][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:03:45.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:45.823][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:45.824][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:03:45.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:03:45.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:45.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:45.828][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:03:45.829][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:03:45.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:45.831][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:45.832][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:03:45.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:03:45.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:45.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:45.835][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:03:45.836][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:03:45.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:45.838][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:45.839][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:03:45.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:03:45.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:45.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:45.843][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:03:45.844][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:03:45.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:45.845][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:45.847][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:03:45.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:03:45.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:45.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:45.850][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:03:45.851][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:03:45.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:45.852][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:45.854][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:03:45.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:03:45.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:45.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:45.857][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:03:45.858][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:45.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:45.860][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:45.861][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:03:45.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:45.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:45.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:45.865][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:45.866][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:45.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:45.867][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:45.868][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:45.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:45.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:45.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:45.872][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:03:45.873][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:03:45.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:45.875][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:45.876][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:03:45.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:03:45.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:45.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:45.879][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:03:45.880][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:03:45.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:45.882][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:45.883][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:03:45.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:03:45.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:45.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:45.886][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:03:45.887][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:03:45.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:45.889][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:45.890][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:03:45.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:03:45.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:45.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:45.894][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:45.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:45.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:45.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:45.897][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:45.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:45.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:45.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:45.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:45.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:45.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:45.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:45.904][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:45.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:45.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:45.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:45.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:45.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:45.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:45.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:45.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:45.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:45.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:45.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:45.915][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:45.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:45.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:45.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:45.918][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:45.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:45.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:45.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:45.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:45.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:45.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:45.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:45.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:45.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:45.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:45.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:45.928][self$createEntryFromContent] Accession numbers: 3017.
biodb.TRACE[2025-03-15 16:03:45.929][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:45.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:45.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:45.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:45.933][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:45.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:45.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:45.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:45.936][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:45.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:45.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:45.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:45.939][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:45.940][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:45.941][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:45.946][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:45.946][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:45.947][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:45.948][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:03:45.949][private$loadEntries] Creating entries from ids [1]: "3510".
biodb.DEBUG[2025-03-15 16:03:45.950][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:03:45.951][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3510".
biodb.TRACE[2025-03-15 16:03:45.952][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:03:45.953][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:03:45.954][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:03:45.955][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:03:45.956][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:03:45.957][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:03:45.959][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:45.960][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:45.961][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:45.967][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:45.968][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:45.969][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:45.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:03:45.971][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3510".
biodb.DEBUG[2025-03-15 16:03:45.974][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:03:45.974][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:03:45.976][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3510".
biodb.TRACE[2025-03-15 16:03:46.331][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3510).
biodb.DEBUG[2025-03-15 16:03:46.695][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:03:46.696][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58362fa70b44eecb6a87afbf9b6dfd8b.content"
biodb.TRACE[2025-03-15 16:03:46.700][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58362fa70b44eecb6a87afbf9b6dfd8b.request"
biodb.TRACE[2025-03-15 16:03:46.702][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3510.xml"
biodb.DEBUG[2025-03-15 16:03:46.704][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:03:46.705][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:03:46.706][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:03:46.707][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:46.708][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:46.709][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:46.714][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:46.715][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:46.716][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:46.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:46.719][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:46.720][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:46.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:46.721][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:46.722][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:46.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:46.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:46.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:46.726][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:03:46.740][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:03:46.741][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:46.742][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:46.743][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:03:46.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:03:46.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:46.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:46.747][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:03:46.748][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:03:46.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:46.749][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:46.750][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:03:46.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:03:46.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:46.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:46.754][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:03:46.754][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:03:46.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:46.756][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:46.757][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:03:46.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:03:46.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:46.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:46.760][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:03:46.761][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:03:46.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:46.763][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:46.764][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:03:46.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:03:46.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:46.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:46.767][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:03:46.768][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:03:46.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:46.769][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:46.770][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:03:46.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:03:46.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:46.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:46.774][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:03:46.775][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:46.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:46.776][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:46.777][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:03:46.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:46.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:46.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:46.780][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:46.781][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:46.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:46.783][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:46.784][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:46.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:46.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:46.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:46.787][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:03:46.788][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:03:46.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:46.790][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:46.791][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:03:46.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:03:46.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:46.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:46.794][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:03:46.795][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:03:46.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:46.796][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:46.797][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:03:46.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:03:46.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:46.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:46.801][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:03:46.801][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:03:46.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:46.803][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:46.804][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:03:46.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:03:46.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:46.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:46.807][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:46.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:46.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:46.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:46.810][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:46.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:46.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:46.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:46.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:46.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:46.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:46.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:46.817][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:46.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:46.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:46.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:46.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:46.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:46.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:46.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:46.824][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:46.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:46.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:46.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:46.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:46.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:46.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:46.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:46.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:46.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:46.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:46.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:46.834][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:46.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:46.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:46.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:46.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:46.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:46.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:46.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:46.841][self$createEntryFromContent] Accession numbers: 3510.
biodb.TRACE[2025-03-15 16:03:46.842][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:46.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:46.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:46.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:46.846][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:46.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:46.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:46.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:46.849][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:46.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:46.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:46.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:46.853][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:46.854][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:46.854][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:46.859][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:46.860][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:46.861][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:46.862][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:03:46.863][private$loadEntries] Creating entries from ids [1]: "7554".
biodb.DEBUG[2025-03-15 16:03:46.864][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:03:46.865][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7554".
biodb.TRACE[2025-03-15 16:03:46.866][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:03:46.867][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:03:46.868][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:03:46.869][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:03:46.870][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:03:46.871][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:03:46.873][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:46.874][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:46.874][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:46.879][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:46.880][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:46.881][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:46.881][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:03:46.882][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7554".
biodb.DEBUG[2025-03-15 16:03:46.885][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:03:46.886][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:03:46.887][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7554".
biodb.TRACE[2025-03-15 16:03:47.240][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7554).
biodb.DEBUG[2025-03-15 16:03:47.759][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:03:47.761][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66bd6c2472b2485e58ad424b4505cbea.content"
biodb.TRACE[2025-03-15 16:03:47.764][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66bd6c2472b2485e58ad424b4505cbea.request"
biodb.TRACE[2025-03-15 16:03:47.766][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7554.xml"
biodb.DEBUG[2025-03-15 16:03:47.767][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:03:47.769][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:03:47.770][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:03:47.771][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:47.772][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:47.772][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:47.777][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:47.778][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:47.779][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:47.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:47.781][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:47.782][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:47.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:47.784][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:47.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:47.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:47.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:47.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:47.788][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:03:47.790][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:03:47.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:47.791][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:47.792][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:03:47.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:03:47.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:47.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:47.796][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:03:47.796][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:03:47.797][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:47.798][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:47.799][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:03:47.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:03:47.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:47.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:47.803][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:03:47.804][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:03:47.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:47.805][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:47.806][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:03:47.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:03:47.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:47.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:47.810][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:03:47.811][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:03:47.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:47.813][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:47.814][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:03:47.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:03:47.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:47.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:47.817][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:03:47.818][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:03:47.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:47.820][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:47.821][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:03:47.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:03:47.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:47.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:47.824][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:03:47.825][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:47.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:47.827][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:47.828][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:03:47.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:47.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:47.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:47.831][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:47.832][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:47.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:47.834][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:47.835][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:47.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:47.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:47.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:47.839][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:03:47.840][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:03:47.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:47.841][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:47.843][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:03:47.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:03:47.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:47.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:47.846][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:03:47.847][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:03:47.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:47.849][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:47.850][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:03:47.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:03:47.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:47.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:47.853][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:03:47.854][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:03:47.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:47.856][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:47.857][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:03:47.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:03:47.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:47.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:47.860][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:47.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:47.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:47.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:47.864][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:47.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:47.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:47.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:47.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:47.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:47.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:47.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:47.871][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:47.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:47.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:47.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:47.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:47.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:47.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:47.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:47.877][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:47.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:47.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:47.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:47.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:47.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:47.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:47.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:47.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:47.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:47.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:47.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:47.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:47.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:47.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:47.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:47.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:47.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:47.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:47.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:47.894][self$createEntryFromContent] Accession numbers: 7554.
biodb.TRACE[2025-03-15 16:03:47.895][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:47.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:47.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:47.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:47.899][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:47.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:47.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:47.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:47.902][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:47.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:47.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:47.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:47.905][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:03:47.907][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:47.915][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:47.916][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:47.921][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:47.922][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:47.923][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:47.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:47.925][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:47.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:47.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:47.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:47.928][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:47.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:47.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:47.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:47.931][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:47.932][private$selectFields]
biodb.TRACE[2025-03-15 16:03:47.933][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:03:47.934][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:03:47.934][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:47.935][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:47.936][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:47.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:47.938][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:47.938][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:47.940][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:47.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:47.941][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:47.942][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:47.943][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:47.944][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:47.945][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:47.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:47.946][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:47.947][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:03:47.948][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:47.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:47.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:47.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:47.951][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:47.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:47.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:47.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:47.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:47.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:47.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:47.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:47.959][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-03-15 16:03:47.960][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:47.960][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:47.961][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:47.966][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:47.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:47.967][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:47.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:47.969][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:47.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:47.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:47.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:47.973][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:47.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:47.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:47.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:47.976][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:47.977][private$selectFields]
biodb.TRACE[2025-03-15 16:03:47.978][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:03:47.978][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:03:47.979][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:47.980][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:47.981][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:47.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:47.983][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:47.983][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:47.984][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:47.985][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:47.986][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:47.987][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:47.988][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:47.988][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:47.989][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:47.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:47.991][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:47.992][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:03:47.993][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:47.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:47.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:47.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:47.996][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:47.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:47.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:47.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:47.999][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:48.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:48.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:48.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:48.003][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3017].
biodb.DEBUG[2025-03-15 16:03:48.004][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:48.004][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:48.005][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:48.010][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:48.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:48.011][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:48.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:48.013][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:48.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:48.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:48.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:48.017][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:48.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:48.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:48.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:48.020][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:48.021][private$selectFields]
biodb.TRACE[2025-03-15 16:03:48.022][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:03:48.022][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:03:48.023][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:48.024][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:48.025][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:48.026][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:48.027][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:48.027][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:48.028][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:48.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:48.030][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:48.031][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:48.032][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:48.032][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:48.033][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:48.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:48.035][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:48.036][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:03:48.037][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:48.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:48.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:48.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:48.040][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:48.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:48.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:48.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:48.043][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:48.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:48.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:48.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:48.047][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7554].
biodb.DEBUG[2025-03-15 16:03:48.048][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:03:48.049][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-03-15 16:03:48.057][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:48.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:48.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:48.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:48.061][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:48.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:48.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:48.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:48.064][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:48.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:48.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:48.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:48.068][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:48.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:48.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:48.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:48.071][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:48.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:48.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:48.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:48.074][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:48.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:48.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:48.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:48.078][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:48.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:48.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:48.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:48.081][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:48.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:48.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:48.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:48.084][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:48.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:48.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:48.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:48.088][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:48.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:48.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:48.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:48.091][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:48.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:48.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:48.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:48.095][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:48.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:48.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:48.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:48.100][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:48.101][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:48.102][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:48.107][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:48.108][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:48.109][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:48.109][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:03:48.112][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:03:48.115][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:03:48.116][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-03-15 16:03:48.117][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:03:48.118][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-03-15 16:03:48.121][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:03:48.124][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:03:48.125][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-03-15 16:03:48.126][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:03:48.127][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-03-15 16:03:48.130][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:48.130][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:48.131][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:48.136][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:48.137][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:48.137][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:48.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:48.139][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:48.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:48.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:48.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:48.143][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:48.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:48.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:48.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:48.146][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:48.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:48.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:48.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:48.149][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:48.150][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:48.151][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:48.156][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:48.157][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:48.158][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:48.158][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:48.159][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:48.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:48.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:48.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:48.163][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:48.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:48.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:48.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:48.166][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:48.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:48.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:48.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:48.170][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:48.171][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:48.172][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:48.177][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:48.177][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:48.178][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:48.179][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:48.180][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:48.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:48.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:48.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:48.184][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:48.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:48.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:48.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:48.187][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:48.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:48.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:48.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:48.191][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:03:48.192][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:48.193][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:48.194][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:48.199][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:48.200][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:48.200][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:48.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:48.202][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:48.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:48.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:48.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:48.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:48.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:48.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:48.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:48.209][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:48.209][private$selectFields]
biodb.TRACE[2025-03-15 16:03:48.210][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:03:48.211][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:03:48.212][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:48.213][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:48.214][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:48.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:48.215][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:48.216][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:48.217][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:48.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:48.218][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:48.219][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:48.220][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:48.221][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:48.222][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:48.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:48.229][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:48.230][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:03:48.230][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:48.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:48.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:48.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:48.234][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:48.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:48.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:48.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:48.237][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:48.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:48.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:48.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:48.240][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-03-15 16:03:48.241][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:48.242][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:48.243][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:48.248][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:48.248][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:48.249][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:48.250][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:48.251][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:48.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:48.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:48.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:48.254][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:48.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:48.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:48.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:48.257][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:48.258][private$selectFields]
biodb.TRACE[2025-03-15 16:03:48.259][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:03:48.260][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:03:48.261][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:48.262][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:48.263][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:48.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:48.264][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:48.265][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:48.266][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:48.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:48.267][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:48.268][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:48.269][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:48.270][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:48.271][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:48.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:48.272][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:48.273][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:03:48.274][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:48.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:48.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:48.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:48.277][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:48.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:48.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:48.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:48.281][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:48.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:48.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:48.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:48.284][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-03-15 16:03:48.285][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:48.286][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:48.286][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:48.291][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:48.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:48.293][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:48.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:48.294][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:48.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:48.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:48.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:48.298][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:48.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:48.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:48.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:48.301][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:48.302][private$selectFields]
biodb.TRACE[2025-03-15 16:03:48.303][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:03:48.304][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:03:48.304][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:48.305][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:48.306][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:48.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:48.307][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:48.308][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:48.309][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:48.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:48.311][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:48.312][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:48.313][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:48.314][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:48.314][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:48.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:48.316][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:48.317][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:03:48.317][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:48.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:48.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:48.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:48.321][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:48.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:48.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:48.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:48.324][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:48.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:48.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:48.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:48.328][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-03-15 16:03:48.329][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:03:48.329][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:03:48.331][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:48.332][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:48.333][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:48.338][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:48.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:48.339][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:48.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:03:48.343][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:03:48.346][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:03:48.347][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:03:48.348][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-03-15 16:03:48.964][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-03-15 16:03:49.323][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:03:49.325][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f88afce5e7bcb0842d474b04c0bef37a.content"
biodb.TRACE[2025-03-15 16:03:49.328][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f88afce5e7bcb0842d474b04c0bef37a.request"
biodb.DEBUG[2025-03-15 16:03:49.332][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:49.333][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:49.333][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:49.339][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:49.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:49.340][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:49.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:49.342][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:49.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:49.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:49.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:49.346][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:49.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:49.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:49.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:49.349][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:49.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:49.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:49.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:49.352][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:49.353][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:49.354][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:49.359][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:49.360][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:49.360][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:49.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:49.362][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:49.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:49.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:49.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:49.366][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:49.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:49.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:49.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:49.369][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:49.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:49.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:49.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:49.373][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:49.373][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:49.374][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:49.379][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:49.380][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:49.381][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:49.381][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:03:49.382][private$loadEntries] Creating entries from ids [1]: "27495".
biodb.DEBUG[2025-03-15 16:03:49.383][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:03:49.385][cch$loadFileContent] Trying to load 1 files from cache: [1]: "27495".
biodb.TRACE[2025-03-15 16:03:49.386][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:03:49.386][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:03:49.387][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:03:49.388][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:03:49.389][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:03:49.390][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:03:49.392][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:49.393][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:49.394][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:49.399][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:49.400][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:49.401][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:49.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:03:49.402][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=27495".
biodb.DEBUG[2025-03-15 16:03:49.405][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:03:49.405][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:03:49.407][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=27495".
biodb.TRACE[2025-03-15 16:03:49.773][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=27495).
biodb.DEBUG[2025-03-15 16:03:50.131][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:03:50.134][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/edda5d46cbbeda6cad9b4593b6925e01.content"
biodb.TRACE[2025-03-15 16:03:50.137][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/edda5d46cbbeda6cad9b4593b6925e01.request"
biodb.TRACE[2025-03-15 16:03:50.140][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/27495.xml"
biodb.DEBUG[2025-03-15 16:03:50.142][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:03:50.143][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:03:50.144][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:03:50.146][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:50.147][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:50.148][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:50.152][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:50.153][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:50.154][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:50.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:50.157][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:50.158][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:50.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.159][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:50.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:50.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:50.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:50.164][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:03:50.165][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:03:50.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.167][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:50.168][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:03:50.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:03:50.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:50.172][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:03:50.173][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:03:50.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.175][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:50.176][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:03:50.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:03:50.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:50.180][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:03:50.181][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:03:50.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.183][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:50.184][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:03:50.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:03:50.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:50.188][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:03:50.189][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:03:50.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.191][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:50.192][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:03:50.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:03:50.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:50.196][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:03:50.197][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:03:50.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.198][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:50.200][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:03:50.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:03:50.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:50.203][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:03:50.204][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:50.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.206][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:50.207][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:03:50.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:50.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:50.211][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:50.212][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:50.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.214][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:50.215][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:50.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:50.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:50.220][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:03:50.221][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:03:50.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.223][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:50.224][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:03:50.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:03:50.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:50.228][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:03:50.229][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:03:50.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.231][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:50.233][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:03:50.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:03:50.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:50.237][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:03:50.237][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:03:50.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.251][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:50.253][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:03:50.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:03:50.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:50.257][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:50.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:50.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:50.261][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:50.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:50.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:50.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:50.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:50.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:50.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:50.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:50.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:50.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:50.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:50.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:50.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:50.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:50.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:50.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:50.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:50.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:50.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:50.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:50.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:50.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:50.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:50.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:50.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:50.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:50.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:50.291][self$createEntryFromContent] Accession numbers: 27495.
biodb.TRACE[2025-03-15 16:03:50.292][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:50.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:50.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:50.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:50.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:50.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:50.312][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:50.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:50.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:50.315][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:03:50.317][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:50.317][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:50.318][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:50.323][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:50.324][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:50.324][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:50.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:50.326][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:50.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:50.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:50.330][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:50.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:50.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:50.338][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:50.339][private$selectFields]
biodb.TRACE[2025-03-15 16:03:50.339][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:03:50.340][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:03:50.341][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:50.342][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:50.343][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:50.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.345][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:50.345][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:50.346][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:50.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.348][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:50.349][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:50.350][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:50.350][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:50.351][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:50.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.353][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:50.354][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:03:50.355][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:50.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:50.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:50.358][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:50.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:50.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:50.362][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:50.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:50.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:50.365][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-03-15 16:03:50.366][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:50.367][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:50.368][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:50.373][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:50.373][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:50.374][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:50.375][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:50.376][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:50.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:50.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:50.379][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:50.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:50.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:50.383][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:50.384][private$selectFields]
biodb.TRACE[2025-03-15 16:03:50.385][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:03:50.385][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:03:50.386][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:50.387][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:50.388][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:50.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.390][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:50.390][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:50.391][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:50.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.393][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:50.394][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:50.395][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:50.396][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:50.396][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:50.397][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.398][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:50.399][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:03:50.400][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:50.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:50.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:50.403][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:50.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:50.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:50.407][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:50.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:50.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:50.410][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-03-15 16:03:50.411][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:50.412][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:50.413][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:50.418][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:50.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:50.419][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:50.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:50.421][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:50.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:50.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:50.424][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:50.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:50.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:50.427][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:50.428][private$selectFields]
biodb.TRACE[2025-03-15 16:03:50.429][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:03:50.430][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:03:50.431][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:50.432][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:50.433][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:50.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.434][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:50.435][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:50.436][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:50.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.437][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:50.438][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:50.439][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:50.440][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:50.441][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:50.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.442][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:50.443][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:03:50.444][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:50.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:50.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:50.447][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:50.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:50.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:50.451][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:50.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:50.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:50.455][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [27495].
biodb.DEBUG[2025-03-15 16:03:50.455][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:03:50.456][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:03:50.458][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:50.459][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:50.460][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:50.464][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:50.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:50.466][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:50.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:03:50.469][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:03:50.472][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:03:50.473][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2025-03-15 16:03:50.474][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:03:50.475][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2025-03-15 16:03:50.478][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:50.478][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:50.479][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:50.484][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:50.485][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:50.486][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:50.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:50.487][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:50.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:50.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:50.491][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:50.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:50.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:50.494][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:50.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:50.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:50.497][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:50.498][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:50.499][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:50.504][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:50.504][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:50.505][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:50.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:50.507][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:50.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:50.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:50.511][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:50.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:50.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:50.514][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:50.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:50.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:50.518][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:50.518][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:50.519][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:50.524][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:50.525][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:50.526][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:50.526][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:50.527][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:50.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:50.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:50.531][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:50.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:50.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:50.534][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:50.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:50.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:50.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:50.537][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:50.538][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:50.539][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:50.544][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:50.545][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:50.546][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:50.547][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:03:50.548][private$loadEntries] Creating entries from ids [1]: "65675".
biodb.DEBUG[2025-03-15 16:03:50.549][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:03:50.552][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65675".
biodb.TRACE[2025-03-15 16:03:50.553][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:03:50.554][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:03:50.555][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:03:50.556][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:03:50.557][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:03:50.558][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:03:50.560][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:50.561][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:50.562][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:50.569][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:50.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:50.570][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:50.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:03:50.572][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65675".
biodb.DEBUG[2025-03-15 16:03:50.575][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:03:50.576][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:03:50.578][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65675".
biodb.TRACE[2025-03-15 16:03:50.966][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65675).
biodb.DEBUG[2025-03-15 16:03:51.589][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:03:51.591][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5e9eb5601826c5f1539c216fc81b6e57.content"
biodb.TRACE[2025-03-15 16:03:51.594][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5e9eb5601826c5f1539c216fc81b6e57.request"
biodb.TRACE[2025-03-15 16:03:51.596][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65675.xml"
biodb.DEBUG[2025-03-15 16:03:51.598][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:03:51.599][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:03:51.600][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:03:51.601][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:51.602][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:51.603][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:51.607][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:51.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:51.609][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:51.610][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:51.612][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:51.613][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:51.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:51.615][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:51.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:51.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:51.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:51.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:51.619][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:03:51.620][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:03:51.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:51.622][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:51.623][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:03:51.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:03:51.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:51.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:51.626][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:03:51.627][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:03:51.628][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:51.629][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:51.630][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:03:51.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:03:51.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:51.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:51.633][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:03:51.634][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:03:51.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:51.635][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:51.636][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:03:51.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:03:51.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:51.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:51.640][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:03:51.641][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:03:51.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:51.642][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:51.643][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:03:51.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:03:51.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:51.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:51.647][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:03:51.647][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:03:51.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:51.649][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:51.650][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:03:51.651][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:51.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:51.652][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:51.653][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:03:51.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:51.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:51.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:51.657][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:51.657][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:51.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:51.659][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:51.660][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:51.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:51.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:51.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:51.663][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:03:51.664][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:03:51.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:51.666][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:51.667][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:03:51.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:03:51.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:51.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:51.670][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:03:51.671][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:03:51.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:51.673][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:51.674][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:03:51.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:03:51.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:51.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:51.678][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:03:51.678][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:03:51.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:51.680][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:51.681][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:03:51.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:03:51.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:51.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:51.684][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:51.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:51.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:51.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:51.688][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:51.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:51.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:51.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:51.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:51.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:51.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:51.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:51.694][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:51.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:51.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:51.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:51.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:51.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:51.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:51.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:51.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:51.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:51.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:51.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:51.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:51.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:51.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:51.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:51.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:51.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:51.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:51.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:51.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:51.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:51.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:51.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:51.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:51.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:51.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:51.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:51.718][self$createEntryFromContent] Accession numbers: 65675.
biodb.TRACE[2025-03-15 16:03:51.719][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:51.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:51.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:51.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:51.722][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:51.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:51.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:51.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:51.726][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:51.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:51.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:51.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:51.729][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:51.730][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:51.731][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:51.736][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:51.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:51.737][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:51.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:03:51.739][private$loadEntries] Creating entries from ids [1]: "66318".
biodb.DEBUG[2025-03-15 16:03:51.740][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:03:51.741][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66318".
biodb.TRACE[2025-03-15 16:03:51.742][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:03:51.743][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:03:51.744][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:03:51.745][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:03:51.745][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:03:51.746][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:03:51.748][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:51.749][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:51.750][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:51.755][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:51.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:51.756][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:51.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:03:51.758][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66318".
biodb.DEBUG[2025-03-15 16:03:51.760][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:03:51.761][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:03:51.762][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66318".
biodb.TRACE[2025-03-15 16:03:52.130][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66318).
biodb.DEBUG[2025-03-15 16:03:52.498][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:03:52.500][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f7af403e0af2ad309d5e7b7572ad9eab.content"
biodb.TRACE[2025-03-15 16:03:52.503][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f7af403e0af2ad309d5e7b7572ad9eab.request"
biodb.TRACE[2025-03-15 16:03:52.505][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66318.xml"
biodb.DEBUG[2025-03-15 16:03:52.506][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:03:52.507][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:03:52.508][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:03:52.510][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:52.510][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:52.511][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:52.516][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:52.516][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:52.517][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:52.518][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:52.520][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:52.521][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:52.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:52.522][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:52.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:52.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:52.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:52.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:52.526][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:03:52.527][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:03:52.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:52.529][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:52.530][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:03:52.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:03:52.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:52.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:52.533][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:03:52.534][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:03:52.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:52.535][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:52.536][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:03:52.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:03:52.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:52.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:52.539][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:03:52.540][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:03:52.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:52.542][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:52.543][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:03:52.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:03:52.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:52.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:52.546][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:03:52.547][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:03:52.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:52.548][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:52.549][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:03:52.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:03:52.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:52.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:52.553][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:03:52.553][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:03:52.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:52.555][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:52.556][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:03:52.557][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:52.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:52.559][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:52.560][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:03:52.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:52.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:52.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:52.563][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:52.564][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:52.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:52.565][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:52.566][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:52.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:52.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:52.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:52.570][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:03:52.570][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:03:52.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:52.572][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:52.573][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:03:52.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:03:52.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:52.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:52.577][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:03:52.577][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:03:52.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:52.579][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:52.580][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:03:52.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:03:52.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:52.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:52.583][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:03:52.583][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:03:52.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:52.585][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:52.586][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:03:52.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:03:52.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:52.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:52.589][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:52.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:52.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:52.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:52.592][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:52.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:52.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:52.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:52.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:52.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:52.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:52.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:52.598][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:52.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:52.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:52.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:52.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:52.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:52.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:52.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:52.604][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:52.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:52.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:52.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:52.607][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:52.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:52.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:52.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:52.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:52.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:52.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:52.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:52.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:52.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:52.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:52.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:52.625][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:52.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:52.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:52.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:52.628][self$createEntryFromContent] Accession numbers: 66318.
biodb.TRACE[2025-03-15 16:03:52.629][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:52.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:52.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:52.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:52.632][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:52.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:52.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:52.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:52.635][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:52.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:52.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:52.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:52.638][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:52.639][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:52.639][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:52.644][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:52.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:52.645][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:52.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:03:52.647][private$loadEntries] Creating entries from ids [1]: "67547".
biodb.DEBUG[2025-03-15 16:03:52.647][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:03:52.649][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67547".
biodb.TRACE[2025-03-15 16:03:52.650][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:03:52.650][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:03:52.651][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:03:52.652][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:03:52.653][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:03:52.653][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:03:52.655][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:52.656][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:52.657][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:52.661][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:52.662][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:52.663][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:52.664][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:03:52.665][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67547".
biodb.DEBUG[2025-03-15 16:03:52.667][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:03:52.667][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:03:52.668][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67547".
biodb.TRACE[2025-03-15 16:03:53.023][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67547).
biodb.DEBUG[2025-03-15 16:03:53.462][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:03:53.464][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5dcb6d289b29a3e5a91ef3f664ac8354.content"
biodb.TRACE[2025-03-15 16:03:53.467][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5dcb6d289b29a3e5a91ef3f664ac8354.request"
biodb.TRACE[2025-03-15 16:03:53.469][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67547.xml"
biodb.DEBUG[2025-03-15 16:03:53.470][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:03:53.471][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:03:53.472][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:03:53.473][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:53.474][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:53.475][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:53.479][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:53.480][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:53.481][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:53.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:53.483][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:53.484][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:53.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:53.486][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:53.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:53.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:53.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:53.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:53.490][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:03:53.490][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:03:53.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:53.492][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:53.493][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:03:53.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:03:53.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:53.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:53.496][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:03:53.497][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:03:53.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:53.498][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:53.499][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:03:53.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:03:53.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:53.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:53.502][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:03:53.503][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:03:53.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:53.504][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:53.505][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:03:53.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:03:53.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:53.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:53.508][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:03:53.509][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:03:53.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:53.511][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:53.512][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:03:53.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:03:53.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:53.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:53.515][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:03:53.516][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:03:53.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:53.517][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:53.518][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:03:53.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:03:53.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:53.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:53.521][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:03:53.522][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:53.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:53.523][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:53.524][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:03:53.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:53.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:53.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:53.527][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:53.528][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:53.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:53.529][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:53.530][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:53.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:53.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:53.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:53.533][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:03:53.534][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:03:53.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:53.535][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:53.536][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:03:53.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:03:53.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:53.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:53.540][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:03:53.540][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:03:53.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:53.542][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:53.543][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:03:53.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:03:53.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:53.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:53.546][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:03:53.547][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:03:53.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:53.549][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:53.550][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:03:53.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:03:53.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:53.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:53.553][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:53.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:53.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:53.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:53.556][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:53.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:53.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:53.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:53.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:53.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:53.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:53.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:53.563][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:53.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:53.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:53.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:53.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:53.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:53.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:53.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:53.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:53.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:53.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:53.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:53.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:53.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:53.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:53.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:53.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:53.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:53.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:53.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:53.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:53.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:53.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:53.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:53.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:53.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:53.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:53.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:53.587][self$createEntryFromContent] Accession numbers: 67547.
biodb.TRACE[2025-03-15 16:03:53.588][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:53.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:53.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:53.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:53.591][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:53.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:53.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:53.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:53.595][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:53.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:53.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:53.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:53.599][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:53.599][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:53.600][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:53.605][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:53.606][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:53.606][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:53.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:03:53.608][private$loadEntries] Creating entries from ids [1]: "69550".
biodb.DEBUG[2025-03-15 16:03:53.609][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:03:53.610][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69550".
biodb.TRACE[2025-03-15 16:03:53.611][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:03:53.612][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:03:53.613][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:03:53.614][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:03:53.615][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:03:53.615][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:03:53.618][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:53.618][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:53.619][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:53.624][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:53.625][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:53.626][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:53.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:03:53.627][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69550".
biodb.DEBUG[2025-03-15 16:03:53.629][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:03:53.630][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:03:53.631][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69550".
biodb.TRACE[2025-03-15 16:03:53.991][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69550).
biodb.DEBUG[2025-03-15 16:03:54.369][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:03:54.371][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/05703421c7bf99b1d8473c1de6165168.content"
biodb.TRACE[2025-03-15 16:03:54.374][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/05703421c7bf99b1d8473c1de6165168.request"
biodb.TRACE[2025-03-15 16:03:54.377][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69550.xml"
biodb.DEBUG[2025-03-15 16:03:54.378][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:03:54.379][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:03:54.380][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:03:54.382][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:54.382][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:54.383][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:54.388][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:54.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:54.390][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:54.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:54.393][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:54.394][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:54.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:54.395][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:54.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:54.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:54.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:54.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:54.400][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:03:54.401][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:03:54.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:54.403][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:54.404][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:03:54.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:03:54.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:54.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:54.407][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:03:54.408][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:03:54.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:54.410][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:54.411][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:03:54.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:03:54.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:54.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:54.414][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:03:54.415][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:03:54.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:54.417][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:54.418][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:03:54.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:03:54.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:54.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:54.421][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:03:54.422][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:03:54.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:54.424][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:54.425][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:03:54.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:03:54.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:54.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:54.428][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:03:54.429][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:03:54.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:54.431][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:54.432][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:03:54.433][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:54.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:54.435][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:54.436][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:03:54.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:54.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:54.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:54.450][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:54.451][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:54.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:54.453][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:54.453][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:54.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:54.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:54.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:54.457][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:03:54.458][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:03:54.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:54.459][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:54.460][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:03:54.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:03:54.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:54.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:54.463][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:03:54.464][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:03:54.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:54.466][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:54.467][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:03:54.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:03:54.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:54.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:54.470][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:03:54.471][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:03:54.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:54.472][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:54.473][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:03:54.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:03:54.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:54.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:54.476][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:54.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:54.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:54.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:54.480][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:54.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:54.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:54.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:54.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:54.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:54.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:54.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:54.486][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:54.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:54.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:54.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:54.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:54.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:54.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:54.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:54.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:54.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:54.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:54.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:54.496][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:54.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:54.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:54.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:54.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:54.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:54.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:54.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:54.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:54.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:54.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:54.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:54.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:54.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:54.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:54.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:54.510][self$createEntryFromContent] Accession numbers: 69550.
biodb.TRACE[2025-03-15 16:03:54.511][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:54.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:54.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:54.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:54.514][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:54.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:54.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:54.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:54.518][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:54.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:54.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:54.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:54.521][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:54.522][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:54.522][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:54.527][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:54.528][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:54.529][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:54.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:03:54.531][private$loadEntries] Creating entries from ids [1]: "71520".
biodb.DEBUG[2025-03-15 16:03:54.531][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:03:54.533][cch$loadFileContent] Trying to load 1 files from cache: [1]: "71520".
biodb.TRACE[2025-03-15 16:03:54.534][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:03:54.535][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:03:54.536][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:03:54.537][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:03:54.538][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:03:54.538][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:03:54.541][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:54.541][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:54.542][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:54.547][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:54.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:54.549][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:54.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:03:54.551][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71520".
biodb.DEBUG[2025-03-15 16:03:54.553][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:03:54.554][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:03:54.555][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71520".
biodb.TRACE[2025-03-15 16:03:54.915][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71520).
biodb.DEBUG[2025-03-15 16:03:55.281][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:03:55.283][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7ceab0ba86590faa4ea87df2e390610.content"
biodb.TRACE[2025-03-15 16:03:55.286][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7ceab0ba86590faa4ea87df2e390610.request"
biodb.TRACE[2025-03-15 16:03:55.288][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/71520.xml"
biodb.DEBUG[2025-03-15 16:03:55.290][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:03:55.291][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:03:55.292][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:03:55.293][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:55.294][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:55.295][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:55.299][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:55.300][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:55.301][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:55.302][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:55.303][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:55.304][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:55.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:55.306][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:55.307][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:55.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:55.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:55.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:55.311][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:03:55.311][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:03:55.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:55.313][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:55.314][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:03:55.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:03:55.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:55.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:55.317][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:03:55.318][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:03:55.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:55.320][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:55.321][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:03:55.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:03:55.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:55.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:55.325][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:03:55.326][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:03:55.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:55.327][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:55.328][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:03:55.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:03:55.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:55.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:55.332][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:03:55.332][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:03:55.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:55.334][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:55.335][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:03:55.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:03:55.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:55.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:55.338][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:03:55.339][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:03:55.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:55.341][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:55.342][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:03:55.343][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:55.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:55.345][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:55.346][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:03:55.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:55.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:55.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:55.349][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:55.350][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:55.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:55.352][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:55.353][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:55.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:55.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:55.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:55.357][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:03:55.357][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:03:55.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:55.359][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:55.360][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:03:55.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:03:55.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:55.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:55.364][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:03:55.365][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:03:55.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:55.366][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:55.368][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:03:55.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:03:55.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:55.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:55.371][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:03:55.372][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:03:55.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:55.374][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:55.375][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:03:55.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:03:55.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:55.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:55.379][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:55.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:55.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:55.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:55.382][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:55.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:55.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:55.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:55.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:55.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:55.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:55.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:55.389][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:55.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:55.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:55.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:55.393][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:55.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:55.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:55.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:55.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:55.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:55.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:55.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:55.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:55.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:55.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:55.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:55.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:55.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:55.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:55.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:55.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:55.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:55.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:55.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:55.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:55.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:55.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:55.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:55.414][self$createEntryFromContent] Accession numbers: 71520.
biodb.TRACE[2025-03-15 16:03:55.415][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:55.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:55.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:55.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:55.418][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:55.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:55.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:55.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:55.422][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:55.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:55.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:55.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:55.425][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:55.426][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:55.427][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:55.432][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:55.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:55.434][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:55.434][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:03:55.435][private$loadEntries] Creating entries from ids [1]: "77600".
biodb.DEBUG[2025-03-15 16:03:55.436][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:03:55.438][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77600".
biodb.TRACE[2025-03-15 16:03:55.439][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:03:55.440][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:03:55.441][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:03:55.442][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:03:55.442][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:03:55.443][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:03:55.446][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:55.446][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:55.447][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:55.452][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:55.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:55.454][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:55.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:03:55.456][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77600".
biodb.DEBUG[2025-03-15 16:03:55.458][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:03:55.459][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:03:55.460][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77600".
biodb.TRACE[2025-03-15 16:03:55.815][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77600).
biodb.DEBUG[2025-03-15 16:03:56.181][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:03:56.183][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/91aa415bb91d90afd912e94b5d252faa.content"
biodb.TRACE[2025-03-15 16:03:56.186][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/91aa415bb91d90afd912e94b5d252faa.request"
biodb.TRACE[2025-03-15 16:03:56.188][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77600.xml"
biodb.DEBUG[2025-03-15 16:03:56.190][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:03:56.191][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:03:56.203][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:03:56.205][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:56.206][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:56.206][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:56.211][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:56.212][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:56.213][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:56.213][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:56.215][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:56.216][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:56.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:56.217][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:56.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:56.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:56.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:56.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:56.221][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:03:56.222][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:03:56.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:56.224][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:56.225][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:03:56.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:03:56.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:56.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:56.227][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:03:56.228][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:03:56.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:56.230][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:56.231][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:03:56.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:03:56.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:56.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:56.234][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:03:56.234][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:03:56.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:56.236][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:56.237][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:03:56.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:03:56.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:56.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:56.240][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:03:56.240][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:03:56.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:56.242][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:56.243][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:03:56.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:03:56.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:56.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:56.246][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:03:56.247][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:03:56.247][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:56.248][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:56.249][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:03:56.250][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:56.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:56.251][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:56.252][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:03:56.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:56.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:56.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:56.256][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:56.257][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:56.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:56.258][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:56.259][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:56.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:56.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:56.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:56.262][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:03:56.263][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:03:56.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:56.264][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:56.265][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:03:56.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:03:56.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:56.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:56.269][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:03:56.269][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:03:56.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:56.271][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:56.272][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:03:56.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:03:56.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:56.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:56.275][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:03:56.276][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:03:56.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:56.277][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:56.278][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:03:56.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:03:56.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:56.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:56.281][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:56.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:56.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:56.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:56.285][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:56.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:56.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:56.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:56.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:56.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:56.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:56.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:56.291][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:56.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:56.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:56.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:56.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:56.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:56.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:56.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:56.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:56.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:56.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:56.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:56.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:56.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:56.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:56.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:56.303][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:56.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:56.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:56.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:56.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:56.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:56.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:56.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:56.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:56.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:56.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:56.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:56.313][self$createEntryFromContent] Accession numbers: 77600.
biodb.TRACE[2025-03-15 16:03:56.314][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:56.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:56.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:56.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:56.317][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:56.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:56.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:56.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:56.320][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:56.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:56.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:56.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:56.324][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:56.324][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:56.325][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:56.330][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:56.331][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:56.331][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:56.332][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:03:56.333][private$loadEntries] Creating entries from ids [1]: "77601".
biodb.DEBUG[2025-03-15 16:03:56.333][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:03:56.335][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77601".
biodb.TRACE[2025-03-15 16:03:56.335][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:03:56.336][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:03:56.337][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:03:56.338][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:03:56.339][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:03:56.339][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:03:56.342][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:56.342][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:56.343][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:56.348][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:56.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:56.349][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:56.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:03:56.351][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77601".
biodb.DEBUG[2025-03-15 16:03:56.353][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:03:56.354][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:03:56.355][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77601".
biodb.TRACE[2025-03-15 16:03:56.726][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77601).
biodb.DEBUG[2025-03-15 16:03:57.105][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:03:57.106][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ff0e48db0e5117b4127b12d15d1485a8.content"
biodb.TRACE[2025-03-15 16:03:57.110][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ff0e48db0e5117b4127b12d15d1485a8.request"
biodb.TRACE[2025-03-15 16:03:57.112][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77601.xml"
biodb.DEBUG[2025-03-15 16:03:57.113][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:03:57.114][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:03:57.115][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:03:57.116][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:57.117][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:57.118][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:57.122][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:57.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:57.124][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:57.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:57.126][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:57.127][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:57.128][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.129][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:57.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:57.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.133][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:03:57.134][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:03:57.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.135][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.136][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:03:57.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:03:57.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.139][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:03:57.140][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:03:57.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.141][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.142][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:03:57.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:03:57.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.145][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:03:57.146][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:03:57.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.147][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.148][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:03:57.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:03:57.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.151][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:03:57.152][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:03:57.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.153][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.154][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:03:57.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:03:57.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.157][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:03:57.158][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:03:57.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.160][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.160][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:03:57.161][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.163][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.164][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:03:57.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.167][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:57.168][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:57.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.169][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.170][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:57.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:57.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.173][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:03:57.174][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:03:57.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.175][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.176][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:03:57.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:03:57.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.179][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:03:57.180][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:03:57.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.181][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.182][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:03:57.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:03:57.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.185][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:03:57.186][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:03:57.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.188][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.189][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:03:57.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:03:57.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.192][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.195][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:57.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:57.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:57.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:57.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:57.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:57.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:57.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:57.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:57.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:57.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:57.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:57.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:03:57.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:03:57.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:57.231][self$createEntryFromContent] Accession numbers: 77601.
biodb.TRACE[2025-03-15 16:03:57.232][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:57.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:57.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.235][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:57.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:57.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.238][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:57.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:57.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:57.241][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:03:57.243][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:57.243][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:57.244][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:57.248][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:57.249][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:57.250][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:57.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:57.251][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.254][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.257][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:57.258][private$selectFields]
biodb.TRACE[2025-03-15 16:03:57.259][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:03:57.259][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:03:57.260][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:57.261][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.261][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.263][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.264][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.264][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.266][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.267][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:57.267][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:57.268][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.269][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.270][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.271][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:03:57.271][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.275][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.281][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-03-15 16:03:57.282][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:57.283][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:57.284][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:57.289][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:57.289][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:57.290][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:57.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:57.292][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.299][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:57.300][private$selectFields]
biodb.TRACE[2025-03-15 16:03:57.300][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:03:57.301][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:03:57.302][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:57.303][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.304][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.305][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.306][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.307][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.309][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.309][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:57.310][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:57.311][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.312][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.313][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.314][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:03:57.315][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.318][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.322][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.325][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [77600].
biodb.DEBUG[2025-03-15 16:03:57.326][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:57.327][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:57.328][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:57.332][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:57.333][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:57.334][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:57.335][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:57.337][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.340][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.344][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:57.345][private$selectFields]
biodb.TRACE[2025-03-15 16:03:57.346][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:03:57.347][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:03:57.348][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:57.349][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.351][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.353][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.355][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.356][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.358][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.359][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:57.361][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:57.362][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.363][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.365][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.366][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:03:57.368][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.372][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.378][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.382][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [77601].
biodb.DEBUG[2025-03-15 16:03:57.383][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:03:57.384][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-03-15 16:03:57.397][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-03-15 16:03:57.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-03-15 16:03:57.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.403][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-03-15 16:03:57.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-03-15 16:03:57.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.409][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-03-15 16:03:57.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-03-15 16:03:57.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-15 16:03:57.419][biodb::testThat]
biodb.INFO [2025-03-15 16:03:57.420][biodb::testThat] Running test function test_annotateMzValues_input_dataframe_untouched (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2025-03-15 16:03:57.421][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-15 16:03:57.422][biodb::testThat]
biodb.TRACE[2025-03-15 16:03:57.425][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-15 16:03:57.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-15 16:03:57.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.430][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-15 16:03:57.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-15 16:03:57.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.435][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-15 16:03:57.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-15 16:03:57.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.439][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.445][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.449][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.453][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.457][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.461][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.464][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.468][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.471][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.476][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.480][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.484][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:57.492][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:57.493][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:57.494][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:57.499][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:57.500][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:57.501][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:57.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:03:57.504][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:03:57.507][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:03:57.508][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-03-15 16:03:57.509][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:03:57.510][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-03-15 16:03:57.512][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:57.513][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:57.514][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:57.519][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:57.520][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:57.520][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:57.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:57.522][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.526][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.529][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:57.533][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:03:57.535][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:03:57.537][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-03-15 16:03:57.538][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:03:57.539][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-03-15 16:03:57.541][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:57.541][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:57.542][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:57.547][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:57.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:57.549][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:57.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:57.551][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.554][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.557][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:57.561][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:57.562][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:57.563][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:57.568][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:57.574][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:57.575][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:57.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:57.577][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.580][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.583][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:57.587][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:03:57.588][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:57.589][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:57.590][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:57.594][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:57.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:57.596][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:57.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:57.598][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.601][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.604][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:57.605][private$selectFields]
biodb.TRACE[2025-03-15 16:03:57.606][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:03:57.607][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:03:57.608][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:57.609][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.610][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.611][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.612][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.613][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.615][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.615][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:57.616][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:57.617][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.618][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.620][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.620][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:03:57.621][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.628][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.632][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-03-15 16:03:57.633][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:57.633][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:57.634][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:57.639][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:57.640][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:57.641][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:57.641][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:57.642][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.646][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.649][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:57.649][private$selectFields]
biodb.TRACE[2025-03-15 16:03:57.650][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:03:57.651][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:03:57.652][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:57.653][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.653][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.655][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.656][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.657][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.659][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.659][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:57.660][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:57.661][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.662][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.664][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.664][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:03:57.665][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.669][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.672][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.676][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-03-15 16:03:57.677][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:57.677][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:57.678][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:57.683][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:57.684][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:57.685][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:57.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:57.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.690][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.694][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:57.695][private$selectFields]
biodb.TRACE[2025-03-15 16:03:57.695][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:03:57.696][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:03:57.697][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:57.698][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.699][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.700][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.701][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.702][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.704][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.704][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:57.705][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:57.706][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.707][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.709][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.710][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:03:57.710][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.714][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.717][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.721][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-03-15 16:03:57.722][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:03:57.723][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:03:57.724][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:57.725][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:57.726][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:57.731][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:57.731][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:57.732][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:57.733][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:03:57.736][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:03:57.738][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:03:57.739][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2025-03-15 16:03:57.740][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:03:57.741][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2025-03-15 16:03:57.743][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:57.744][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:57.745][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:57.750][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:57.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:57.751][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:57.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:57.753][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.756][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.760][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:57.791][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:57.792][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:57.792][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:57.806][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:57.806][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:57.807][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:57.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:57.809][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.816][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.820][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:57.825][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:03:57.827][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:03:57.828][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2025-03-15 16:03:57.830][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:03:57.831][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2025-03-15 16:03:57.833][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:57.834][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:57.835][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:57.840][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:57.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:57.841][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:57.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:57.843][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.847][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.851][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:57.854][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:57.855][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:57.856][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:57.860][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:57.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:57.862][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:57.863][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:57.864][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.867][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.870][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:57.874][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:57.875][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:57.875][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:57.880][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:57.881][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:57.882][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:57.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:57.884][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.887][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.890][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:57.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:57.894][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:03:57.895][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:57.896][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:57.896][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:57.902][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:57.902][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:57.903][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:57.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:57.905][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.908][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.911][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:57.912][private$selectFields]
biodb.TRACE[2025-03-15 16:03:57.913][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:03:57.914][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:03:57.914][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:57.915][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.916][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.923][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.924][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.925][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.927][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.928][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:57.928][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:57.929][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.930][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.931][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.932][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:03:57.933][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.937][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.940][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.944][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-03-15 16:03:57.944][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:57.945][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:57.946][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:57.951][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:57.951][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:57.952][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:57.953][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:57.954][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.957][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.960][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:57.961][private$selectFields]
biodb.TRACE[2025-03-15 16:03:57.962][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:03:57.963][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:03:57.963][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:57.964][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.965][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.967][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.968][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.968][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.969][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.970][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.971][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:57.972][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:57.973][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.973][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.975][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.976][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:03:57.977][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.980][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.983][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.986][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-03-15 16:03:57.987][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:57.987][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:57.988][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:57.993][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:57.994][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:57.994][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:57.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:57.996][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:57.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:57.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:57.999][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.003][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:58.003][private$selectFields]
biodb.TRACE[2025-03-15 16:03:58.004][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:03:58.005][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:03:58.006][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:58.006][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.007][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.009][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.010][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.010][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.012][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.013][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:58.014][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:58.015][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.016][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.017][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.018][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:03:58.019][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.023][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.026][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.030][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-03-15 16:03:58.030][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:03:58.032][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:03:58.033][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:58.034][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:58.035][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:58.040][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:58.041][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:58.042][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:58.042][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:03:58.045][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:03:58.048][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:03:58.049][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2025-03-15 16:03:58.050][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:03:58.052][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2025-03-15 16:03:58.054][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:58.055][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:58.056][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:58.061][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:58.062][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:58.063][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:58.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:58.064][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:58.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:58.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.068][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:58.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:58.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.072][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:58.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:58.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:58.076][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:58.076][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:58.077][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:58.083][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:58.084][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:58.085][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:58.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:58.088][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:58.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:58.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.092][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:58.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:58.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.096][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:58.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:58.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:58.101][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:58.102][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:58.103][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:58.110][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:58.111][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:58.112][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:58.113][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:58.114][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:58.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:58.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.119][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:58.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:58.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.122][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:58.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:58.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:58.126][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:58.127][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:58.128][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:58.135][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:58.137][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:58.138][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:58.139][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:58.140][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:58.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:58.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.145][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:58.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:58.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.150][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:58.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:58.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:58.155][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:58.156][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:58.157][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:58.163][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:58.164][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:58.165][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:58.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:58.167][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:58.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:58.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:58.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:58.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.174][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:58.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:58.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:58.177][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:58.178][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:58.179][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:58.185][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:58.187][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:58.188][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:58.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:58.190][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:58.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:58.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.194][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:58.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:58.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.199][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:58.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:58.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:58.202][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:58.203][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:58.204][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:58.210][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:58.211][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:58.212][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:58.213][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:58.214][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:58.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:58.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.218][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:58.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:58.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.222][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:58.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:58.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:58.226][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:58.227][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:58.228][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:58.234][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:58.235][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:58.236][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:58.237][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:58.238][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:58.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:58.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.241][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:58.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:58.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.245][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:58.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:58.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:58.250][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:03:58.252][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:03:58.253][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2025-03-15 16:03:58.254][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:03:58.256][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2025-03-15 16:03:58.258][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:58.259][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:58.259][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:58.271][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:58.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:58.272][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:58.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:58.274][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:58.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:58.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.277][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:58.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:58.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.280][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:58.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:58.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:58.284][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:58.285][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:58.285][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:58.290][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:58.291][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:58.292][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:58.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:58.294][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:58.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:58.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.296][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:58.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:58.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.300][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:58.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:58.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:58.303][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:58.304][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:58.305][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:58.309][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:58.310][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:58.311][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:58.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:58.312][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:58.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:58.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.316][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:58.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:58.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.319][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:58.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:58.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:58.322][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:03:58.323][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:58.324][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:58.325][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:58.330][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:58.331][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:58.331][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:58.332][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:58.333][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.337][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.340][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:58.341][private$selectFields]
biodb.TRACE[2025-03-15 16:03:58.342][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:03:58.342][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:03:58.343][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:58.344][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.345][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.347][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.348][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.349][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.350][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.351][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:58.352][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:58.353][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.354][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.355][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.356][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:03:58.357][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.360][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.364][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.367][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-03-15 16:03:58.368][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:58.369][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:58.369][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:58.375][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:58.375][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:58.376][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:58.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:58.378][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.381][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.384][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:58.385][private$selectFields]
biodb.TRACE[2025-03-15 16:03:58.386][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:03:58.387][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:03:58.387][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:58.388][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.389][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.390][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.391][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.392][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.393][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.394][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:58.395][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:58.395][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.397][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.398][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.399][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:03:58.400][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.403][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.406][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.410][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-03-15 16:03:58.411][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:58.412][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:58.412][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:58.417][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:58.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:58.419][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:58.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:58.420][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.424][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.427][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:58.428][private$selectFields]
biodb.TRACE[2025-03-15 16:03:58.429][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:03:58.430][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:03:58.430][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:58.431][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.432][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.433][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.434][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.435][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.437][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.437][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:58.438][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:58.439][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.440][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.441][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.442][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:03:58.443][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.447][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.450][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.453][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-03-15 16:03:58.454][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:03:58.455][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-03-15 16:03:58.475][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:58.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:58.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.478][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:58.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:58.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.481][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:58.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:58.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.485][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:58.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:58.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.488][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:58.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:58.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.491][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:58.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:58.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.494][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:58.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:58.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.498][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:58.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:58.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.501][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:58.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:58.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.505][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:58.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:58.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.508][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:58.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:58.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.511][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:58.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:58.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:58.518][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:58.518][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:58.519][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:58.524][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:58.525][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:58.525][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:58.526][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:03:58.528][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:03:58.531][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:03:58.532][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-03-15 16:03:58.533][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:03:58.534][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-03-15 16:03:58.537][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:03:58.540][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:03:58.554][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-03-15 16:03:58.556][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:03:58.557][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-03-15 16:03:58.559][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:58.560][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:58.561][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:58.566][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:58.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:58.569][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:58.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:58.572][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:58.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:58.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.575][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:58.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:58.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.578][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:58.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:58.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:58.588][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:58.589][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:58.590][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:58.594][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:58.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:58.596][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:58.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:58.598][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:58.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:58.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.601][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:58.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:58.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.604][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:58.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:58.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:58.607][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:58.608][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:58.609][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:58.614][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:58.614][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:58.615][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:58.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:58.617][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:58.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:58.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.620][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:58.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:58.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.623][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:58.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:58.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:58.627][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:03:58.628][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:58.628][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:58.629][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:58.634][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:58.635][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:58.635][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:58.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:58.637][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.640][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.643][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:58.644][private$selectFields]
biodb.TRACE[2025-03-15 16:03:58.645][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:03:58.646][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:03:58.647][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:58.647][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.649][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.650][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.651][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.652][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.654][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.655][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:58.656][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:58.656][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.657][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.659][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.660][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:03:58.661][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.664][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.668][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.672][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-03-15 16:03:58.673][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:58.673][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:58.674][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:58.679][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:58.680][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:58.681][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:58.682][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:58.683][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.686][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.690][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:58.691][private$selectFields]
biodb.TRACE[2025-03-15 16:03:58.691][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:03:58.692][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:03:58.693][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:58.694][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.695][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.697][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.697][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.698][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.700][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.701][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:58.702][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:58.703][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.704][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.705][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.706][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:03:58.707][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.711][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.715][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.718][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-03-15 16:03:58.719][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:58.720][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:58.721][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:58.726][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:58.727][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:58.728][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:58.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:58.730][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.733][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.737][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:58.737][private$selectFields]
biodb.TRACE[2025-03-15 16:03:58.738][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:03:58.739][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:03:58.740][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:58.741][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.741][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.743][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.744][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.745][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.746][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.747][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:58.748][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:58.749][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.750][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.751][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.752][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:03:58.753][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.756][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.759][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.763][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-03-15 16:03:58.764][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:03:58.765][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:03:58.766][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:58.767][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:58.768][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:58.773][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:58.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:58.774][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:58.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:03:58.777][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:03:58.780][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:03:58.781][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2025-03-15 16:03:58.782][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:03:58.784][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2025-03-15 16:03:58.786][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:58.786][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:58.787][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:58.792][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:58.793][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:58.794][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:58.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:58.795][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:58.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:58.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.799][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:58.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:58.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.802][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:58.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:58.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:58.806][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:58.806][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:58.807][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:58.812][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:58.813][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:58.814][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:58.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:58.815][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:58.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:58.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.818][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:58.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:58.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.821][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:58.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:58.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:58.825][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:58.826][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:58.826][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:58.831][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:58.832][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:58.833][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:58.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:58.835][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:58.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:58.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.838][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:58.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:58.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.841][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:58.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:58.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:58.845][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:03:58.846][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:58.847][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:58.848][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:58.853][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:58.854][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:58.854][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:58.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:58.856][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.859][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.863][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:58.863][private$selectFields]
biodb.TRACE[2025-03-15 16:03:58.864][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:03:58.865][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:03:58.866][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:58.867][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.868][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.869][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.870][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.871][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.872][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.873][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:58.874][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:58.875][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.875][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.877][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.878][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:03:58.879][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.882][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.885][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.895][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-03-15 16:03:58.896][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:58.897][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:58.897][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:58.902][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:58.903][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:58.904][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:58.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:58.906][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.909][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.912][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:58.913][private$selectFields]
biodb.TRACE[2025-03-15 16:03:58.913][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:03:58.914][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:03:58.915][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:58.916][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.917][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.918][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.919][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.920][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.922][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.922][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:58.923][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:58.924][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.925][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.926][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.927][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:03:58.928][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.931][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.934][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.938][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-03-15 16:03:58.938][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:58.939][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:58.940][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:58.945][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:58.946][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:58.947][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:58.948][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:58.949][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.952][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.955][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:58.956][private$selectFields]
biodb.TRACE[2025-03-15 16:03:58.956][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:03:58.957][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:03:58.958][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:58.959][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.959][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.961][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.962][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.963][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.964][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.965][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:58.966][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:58.967][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.967][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.969][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.970][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:03:58.970][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.974][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.977][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:58.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:58.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:58.981][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-03-15 16:03:58.981][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:03:58.982][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:03:58.984][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:58.985][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:58.985][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:58.990][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:58.991][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:58.992][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:58.993][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:03:58.995][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:03:58.997][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:03:58.998][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2025-03-15 16:03:59.000][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:03:59.001][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2025-03-15 16:03:59.003][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:59.004][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:59.004][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:59.009][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:59.010][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:59.011][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:59.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:59.013][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:59.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:59.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:59.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:59.016][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:59.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:59.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:59.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:59.020][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:59.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:59.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:59.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:59.023][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:59.024][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:59.024][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:59.029][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:59.030][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:59.031][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:59.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:59.033][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:59.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:59.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:59.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:59.036][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:59.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:59.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:59.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:59.039][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:59.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:59.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:59.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:59.042][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:59.043][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:59.044][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:59.049][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:59.050][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:59.050][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:59.051][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:59.052][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:59.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:59.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:59.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:59.056][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:59.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:59.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:59.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:59.059][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:59.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:59.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:59.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:59.062][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:03:59.064][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:59.064][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:59.065][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:59.070][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:59.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:59.072][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:59.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:59.074][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:59.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:59.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:59.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:59.077][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:59.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:59.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:59.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:59.081][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:59.081][private$selectFields]
biodb.TRACE[2025-03-15 16:03:59.082][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:03:59.083][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:03:59.084][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:59.085][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:59.086][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:59.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:59.087][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:59.088][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:59.089][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:59.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:59.091][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:59.091][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:59.093][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:59.093][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:59.094][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:59.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:59.096][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:59.097][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:03:59.097][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:59.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:59.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:59.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:59.101][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:59.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:59.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:59.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:59.104][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:59.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:59.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:59.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:59.108][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-03-15 16:03:59.109][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:59.109][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:59.110][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:59.115][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:59.116][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:59.117][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:59.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:59.118][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:59.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:59.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:59.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:59.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:59.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:59.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:59.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:59.125][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:59.125][private$selectFields]
biodb.TRACE[2025-03-15 16:03:59.126][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:03:59.127][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:03:59.128][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:59.129][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:59.130][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:59.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:59.131][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:59.132][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:59.133][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:59.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:59.135][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:59.136][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:59.136][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:59.137][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:59.138][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:59.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:59.140][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:59.141][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:03:59.142][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:59.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:59.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:59.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:59.145][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:59.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:59.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:59.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:59.148][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:59.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:59.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:59.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:59.152][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-03-15 16:03:59.152][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:59.153][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:59.154][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:59.159][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:59.160][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:59.160][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:59.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:03:59.162][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:59.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:59.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:59.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:59.166][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:59.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:59.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:59.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:59.169][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:59.170][private$selectFields]
biodb.TRACE[2025-03-15 16:03:59.171][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:03:59.172][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:03:59.173][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:59.173][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:59.174][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:59.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:59.176][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:59.177][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:59.178][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:59.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:59.179][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:59.180][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:59.181][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:03:59.182][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:59.183][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:59.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:59.185][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:59.186][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:03:59.187][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:59.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:59.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:59.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:59.216][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:59.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:59.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:59.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:59.219][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:03:59.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:03:59.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:59.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:59.223][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2025-03-15 16:03:59.223][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:03:59.224][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-03-15 16:03:59.243][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-03-15 16:03:59.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-03-15 16:03:59.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:59.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:59.247][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-03-15 16:03:59.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-03-15 16:03:59.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:59.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:59.250][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-03-15 16:03:59.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-03-15 16:03:59.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:59.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:59.257][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:03:59.258][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:03:59.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:59.259][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:59.260][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:59.261][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:03:59.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:59.262][ef$get] fields variable is a list.
biodb.INFO [2025-03-15 16:03:59.264][biodb::testThat]
biodb.INFO [2025-03-15 16:03:59.264][biodb::testThat] Running test function test.annotateMzValues_real_values (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2025-03-15 16:03:59.265][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-15 16:03:59.266][biodb::testThat]
biodb.TRACE[2025-03-15 16:03:59.268][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-15 16:03:59.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-15 16:03:59.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:59.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:59.272][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-15 16:03:59.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-15 16:03:59.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:59.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:59.275][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-15 16:03:59.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-15 16:03:59.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:59.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:59.278][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:59.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:59.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:59.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:59.281][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:59.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:59.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:59.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:59.285][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:59.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:59.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:59.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:59.288][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:59.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:59.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:59.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:59.292][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:59.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:59.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:59.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:59.295][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:59.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:59.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:59.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:59.298][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:59.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:59.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:59.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:59.301][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:59.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:59.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:59.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:59.305][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:59.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:59.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:59.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:59.309][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:59.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:59.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:59.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:59.312][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:59.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:59.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:59.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:03:59.315][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:59.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:03:59.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:03:59.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:03:59.320][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:03:59.321][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:03:59.322][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:03:59.327][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:03:59.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:03:59.328][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:03:59.329][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:03:59.331][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:03:59.334][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:03:59.335][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:03:59.336][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-03-15 16:03:59.732][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-03-15 16:04:00.280][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:04:00.282][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ebf8c17fa19fb0caf99d83ca8441a2ac.content"
biodb.TRACE[2025-03-15 16:04:00.285][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ebf8c17fa19fb0caf99d83ca8441a2ac.request"
biodb.DEBUG[2025-03-15 16:04:00.290][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:00.291][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:00.292][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:00.297][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:00.298][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:00.298][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:00.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:00.300][private$loadEntries] Creating entries from ids [1]: "3014".
biodb.DEBUG[2025-03-15 16:04:00.301][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:04:00.302][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3014".
biodb.TRACE[2025-03-15 16:04:00.303][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:04:00.304][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:04:00.305][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:04:00.305][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:04:00.306][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:04:00.307][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:04:00.309][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:00.310][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:00.311][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:00.316][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:00.316][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:00.317][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:00.318][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:00.319][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3014".
biodb.DEBUG[2025-03-15 16:04:00.321][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:04:00.322][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:04:00.323][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3014".
biodb.TRACE[2025-03-15 16:04:00.674][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3014).
biodb.DEBUG[2025-03-15 16:04:01.034][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:04:01.036][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/48c0bb0df5de824dbe83babbff8d81fe.content"
biodb.TRACE[2025-03-15 16:04:01.039][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/48c0bb0df5de824dbe83babbff8d81fe.request"
biodb.TRACE[2025-03-15 16:04:01.042][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3014.xml"
biodb.DEBUG[2025-03-15 16:04:01.043][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:04:01.045][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:04:01.046][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:04:01.047][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:01.048][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:01.049][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:01.054][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:01.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:01.056][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:01.056][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:01.058][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:01.059][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:01.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:01.061][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:01.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:01.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:01.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:01.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:01.065][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:01.066][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:01.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:01.068][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:01.069][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:01.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:01.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:01.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:01.072][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:01.073][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:01.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:01.075][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:01.077][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:01.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:01.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:01.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:01.080][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:01.081][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:01.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:01.083][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:01.084][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:01.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:01.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:01.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:01.087][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:01.088][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:01.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:01.089][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:01.090][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:01.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:01.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:01.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:01.094][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:01.095][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:01.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:01.097][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:01.098][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:01.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:01.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:01.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:01.101][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:01.102][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:01.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:01.104][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:01.105][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:01.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:01.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:01.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:01.108][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:01.109][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:01.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:01.111][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:01.112][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:01.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:01.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:01.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:01.115][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:01.116][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:01.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:01.118][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:01.119][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:01.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:01.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:01.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:01.122][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:01.123][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:01.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:01.125][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:01.126][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:01.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:01.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:01.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:01.129][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:01.130][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:01.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:01.132][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:01.133][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:01.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:01.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:01.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:01.136][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:01.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:01.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:01.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:01.140][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:01.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:01.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:01.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:01.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:01.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:01.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:01.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:01.147][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:01.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:01.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:01.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:01.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:01.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:01.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:01.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:01.154][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:01.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:01.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:01.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:01.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:01.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:01.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:01.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:01.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:01.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:01.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:01.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:01.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:01.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:01.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:01.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:01.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:01.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:01.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:01.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:01.183][self$createEntryFromContent] Accession numbers: 3014.
biodb.TRACE[2025-03-15 16:04:01.184][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:01.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:01.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:01.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:01.187][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:01.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:01.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:01.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:01.190][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:01.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:01.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:01.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:01.193][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:01.194][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:01.195][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:01.199][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:01.200][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:01.201][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:01.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:01.203][private$loadEntries] Creating entries from ids [1]: "7567".
biodb.DEBUG[2025-03-15 16:04:01.204][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:04:01.205][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7567".
biodb.TRACE[2025-03-15 16:04:01.206][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:04:01.207][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:04:01.208][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:04:01.208][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:04:01.209][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:04:01.210][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:04:01.212][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:01.212][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:01.213][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:01.218][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:01.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:01.220][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:01.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:01.221][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7567".
biodb.DEBUG[2025-03-15 16:04:01.223][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:04:01.225][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:04:01.226][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7567".
biodb.TRACE[2025-03-15 16:04:01.590][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7567).
biodb.DEBUG[2025-03-15 16:04:01.949][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:04:01.950][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5365299c16307afdd0b9fe7b73b123c.content"
biodb.TRACE[2025-03-15 16:04:01.954][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5365299c16307afdd0b9fe7b73b123c.request"
biodb.TRACE[2025-03-15 16:04:01.956][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7567.xml"
biodb.DEBUG[2025-03-15 16:04:01.957][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:04:01.959][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:04:01.959][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:04:01.961][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:01.962][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:01.965][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:01.972][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:01.973][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:01.974][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:01.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:01.976][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:01.977][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:01.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:01.979][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:01.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:01.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:01.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:01.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:01.983][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:01.984][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:01.985][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:01.986][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:01.987][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:01.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:01.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:01.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:01.990][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:01.991][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:01.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:01.993][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:01.994][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:01.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:01.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:01.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:01.997][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:01.998][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:01.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:02.000][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:02.001][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:02.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:02.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:02.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:02.004][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:02.005][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:02.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:02.007][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:02.008][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:02.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:02.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:02.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:02.011][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:02.012][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:02.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:02.014][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:02.015][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:02.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:02.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:02.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:02.018][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:02.019][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:02.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:02.021][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:02.022][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:02.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:02.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:02.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:02.025][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:02.026][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:02.026][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:02.027][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:02.028][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:02.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:02.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:02.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:02.032][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:02.033][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:02.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:02.034][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:02.036][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:02.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:02.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:02.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:02.039][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:02.039][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:02.040][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:02.041][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:02.042][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:02.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:02.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:02.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:02.046][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:02.046][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:02.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:02.048][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:02.049][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:02.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:02.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:02.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:02.052][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:02.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:02.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:02.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:02.056][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:02.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:02.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:02.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:02.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:02.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:02.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:02.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:02.062][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:02.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:02.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:02.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:02.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:02.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:02.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:02.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:02.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:02.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:02.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:02.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:02.073][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:02.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:02.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:02.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:02.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:02.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:02.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:02.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:02.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:02.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:02.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:02.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:02.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:02.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:02.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:02.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:02.087][self$createEntryFromContent] Accession numbers: 7567.
biodb.TRACE[2025-03-15 16:04:02.088][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:02.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:02.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:02.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:02.091][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:02.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:02.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:02.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:02.094][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:02.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:02.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:02.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:02.098][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:02.098][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:02.099][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:02.104][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:02.105][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:02.106][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:02.106][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:02.107][private$loadEntries] Creating entries from ids [1]: "8021".
biodb.DEBUG[2025-03-15 16:04:02.108][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:04:02.109][cch$loadFileContent] Trying to load 1 files from cache: [1]: "8021".
biodb.TRACE[2025-03-15 16:04:02.110][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:04:02.111][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:04:02.112][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:04:02.113][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:04:02.114][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:04:02.115][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:04:02.117][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:02.117][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:02.118][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:02.123][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:02.124][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:02.124][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:02.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:02.126][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=8021".
biodb.DEBUG[2025-03-15 16:04:02.128][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:04:02.129][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:04:02.130][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=8021".
biodb.TRACE[2025-03-15 16:04:02.495][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=8021).
biodb.DEBUG[2025-03-15 16:04:02.867][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:04:02.869][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6017fc384c334739eec9b216fa851a5.content"
biodb.TRACE[2025-03-15 16:04:02.872][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6017fc384c334739eec9b216fa851a5.request"
biodb.TRACE[2025-03-15 16:04:02.874][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8021.xml"
biodb.DEBUG[2025-03-15 16:04:02.876][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:04:02.876][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:04:02.877][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:04:02.879][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:02.880][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:02.880][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:02.885][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:02.886][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:02.887][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:02.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:02.889][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:02.890][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:02.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:02.892][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:02.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:02.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:02.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:02.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:02.897][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:02.897][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:02.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:02.899][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:02.900][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:02.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:02.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:02.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:02.904][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:02.905][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:02.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:02.906][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:02.907][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:02.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:02.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:02.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:02.911][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:02.912][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:02.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:02.914][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:02.915][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:02.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:02.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:02.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:02.919][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:02.919][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:02.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:02.921][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:02.922][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:02.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:02.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:02.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:02.926][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:02.927][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:02.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:02.929][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:02.930][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:02.931][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:02.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:02.932][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:02.933][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:02.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:02.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:02.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:02.937][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:02.938][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:02.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:02.950][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:02.952][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:02.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:02.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:02.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:02.956][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:02.956][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:02.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:02.958][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:02.959][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:02.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:02.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:02.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:02.963][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:02.964][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:02.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:02.965][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:02.966][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:02.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:02.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:02.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:02.970][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:02.971][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:02.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:02.973][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:02.974][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:02.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:02.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:02.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:02.977][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:02.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:02.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:02.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:02.981][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:02.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:02.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:02.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:02.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:02.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:02.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:02.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:02.987][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:02.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:02.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:02.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:02.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:02.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:02.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:02.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:02.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:02.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:02.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:02.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:02.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:02.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:02.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:02.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:03.000][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:03.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:03.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:03.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:03.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:03.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:03.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:03.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:03.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:03.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:03.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:03.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:03.010][self$createEntryFromContent] Accession numbers: 8021.
biodb.TRACE[2025-03-15 16:04:03.011][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:03.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:03.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:03.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:03.014][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:03.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:03.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:03.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:03.017][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:03.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:03.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:03.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:03.020][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:03.021][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:03.022][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:03.026][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:03.027][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:03.028][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:03.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:03.030][private$loadEntries] Creating entries from ids [1]: "30382".
biodb.DEBUG[2025-03-15 16:04:03.030][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:04:03.032][cch$loadFileContent] Trying to load 1 files from cache: [1]: "30382".
biodb.TRACE[2025-03-15 16:04:03.033][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:04:03.034][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:04:03.034][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:04:03.035][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:04:03.036][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:04:03.037][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:04:03.039][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:03.055][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:03.056][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:03.061][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:03.061][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:03.062][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:03.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:03.064][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30382".
biodb.DEBUG[2025-03-15 16:04:03.066][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:04:03.067][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:04:03.069][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30382".
biodb.TRACE[2025-03-15 16:04:03.709][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30382).
biodb.DEBUG[2025-03-15 16:04:04.063][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:04:04.065][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/762ae1b4688e0a5ef1a1419b25f545f9.content"
biodb.TRACE[2025-03-15 16:04:04.068][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/762ae1b4688e0a5ef1a1419b25f545f9.request"
biodb.TRACE[2025-03-15 16:04:04.070][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/30382.xml"
biodb.DEBUG[2025-03-15 16:04:04.071][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:04:04.072][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:04:04.073][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:04:04.074][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:04.075][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:04.076][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:04.080][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:04.081][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:04.082][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:04.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:04.084][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:04.085][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:04.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:04.087][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:04.088][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:04.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:04.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:04.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:04.091][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:04.092][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:04.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:04.093][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:04.094][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:04.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:04.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:04.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:04.098][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:04.099][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:04.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:04.100][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:04.101][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:04.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:04.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:04.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:04.105][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:04.106][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:04.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:04.107][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:04.108][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:04.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:04.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:04.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:04.111][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:04.112][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:04.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:04.114][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:04.115][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:04.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:04.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:04.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:04.118][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:04.119][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:04.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:04.120][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:04.121][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:04.122][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:04.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:04.123][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:04.124][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:04.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:04.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:04.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:04.127][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:04.128][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:04.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:04.130][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:04.131][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:04.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:04.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:04.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:04.134][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:04.135][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:04.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:04.136][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:04.137][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:04.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:04.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:04.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:04.140][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:04.141][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:04.142][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:04.143][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:04.144][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:04.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:04.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:04.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:04.147][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:04.148][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:04.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:04.149][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:04.150][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:04.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:04.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:04.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:04.154][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:04.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:04.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:04.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:04.157][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:04.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:04.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:04.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:04.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:04.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:04.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:04.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:04.163][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:04.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:04.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:04.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:04.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:04.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:04.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:04.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:04.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:04.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:04.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:04.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:04.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:04.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:04.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:04.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:04.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:04.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:04.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:04.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:04.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:04.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:04.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:04.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:04.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:04.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:04.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:04.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:04.186][self$createEntryFromContent] Accession numbers: 30382.
biodb.TRACE[2025-03-15 16:04:04.187][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:04.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:04.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:04.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:04.189][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:04.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:04.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:04.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:04.193][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:04.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:04.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:04.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:04.196][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:04:04.197][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:04.198][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:04.198][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:04.203][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:04.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:04.205][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:04.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:04.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:04.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:04.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:04.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:04.209][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:04.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:04.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:04.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:04.212][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:04.213][private$selectFields]
biodb.TRACE[2025-03-15 16:04:04.214][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:04.215][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:04.215][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:04.216][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:04.217][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:04.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:04.218][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:04.219][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:04.220][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:04.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:04.222][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:04.222][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:04.223][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:04.224][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:04.225][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:04.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:04.226][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:04.227][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:04.228][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:04.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:04.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:04.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:04.231][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:04.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:04.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:04.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:04.234][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:04.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:04.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:04.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:04.238][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-03-15 16:04:04.239][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:04.239][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:04.240][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:04.252][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:04.253][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:04.254][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:04.255][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:04.256][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:04.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:04.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:04.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:04.259][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:04.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:04.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:04.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:04.262][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:04.263][private$selectFields]
biodb.TRACE[2025-03-15 16:04:04.263][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:04.264][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:04.265][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:04.265][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:04.266][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:04.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:04.268][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:04.268][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:04.269][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:04.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:04.271][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:04.271][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:04.272][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:04.273][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:04.274][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:04.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:04.275][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:04.276][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:04.277][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:04.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:04.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:04.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:04.280][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:04.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:04.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:04.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:04.283][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:04.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:04.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:04.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:04.286][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [8021].
biodb.DEBUG[2025-03-15 16:04:04.287][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:04.287][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:04.288][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:04.292][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:04.293][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:04.294][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:04.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:04.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:04.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:04.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:04.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:04.298][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:04.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:04.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:04.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:04.302][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:04.303][private$selectFields]
biodb.TRACE[2025-03-15 16:04:04.304][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:04.304][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:04.305][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:04.306][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:04.307][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:04.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:04.309][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:04.309][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:04.310][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:04.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:04.312][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:04.313][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:04.314][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:04.314][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:04.315][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:04.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:04.317][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:04.318][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:04.318][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:04.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:04.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:04.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:04.322][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:04.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:04.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:04.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:04.325][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:04.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:04.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:04.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:04.328][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [30382].
biodb.DEBUG[2025-03-15 16:04:04.329][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:04:04.330][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:04:04.332][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:04.333][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:04.333][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:04.338][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:04.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:04.339][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:04.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:04.342][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:04:04.345][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:04:04.346][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:04:04.348][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-03-15 16:04:04.703][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-03-15 16:04:05.069][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:04:05.072][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/152225e020c3e5947a0f5a90f021cee7.content"
biodb.TRACE[2025-03-15 16:04:05.075][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/152225e020c3e5947a0f5a90f021cee7.request"
biodb.DEBUG[2025-03-15 16:04:05.078][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:05.079][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:05.080][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:05.085][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:05.086][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:05.086][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:05.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:05.088][private$loadEntries] Creating entries from ids [1]: "9710".
biodb.DEBUG[2025-03-15 16:04:05.089][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:04:05.090][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9710".
biodb.TRACE[2025-03-15 16:04:05.091][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:04:05.092][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:04:05.093][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:04:05.094][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:04:05.095][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:04:05.096][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:04:05.098][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:05.099][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:05.099][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:05.105][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:05.105][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:05.106][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:05.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:05.108][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9710".
biodb.DEBUG[2025-03-15 16:04:05.110][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:04:05.111][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:04:05.113][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9710".
biodb.TRACE[2025-03-15 16:04:05.474][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9710).
biodb.DEBUG[2025-03-15 16:04:05.845][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:04:05.847][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b7c920ea46a15bb7175f778579142c91.content"
biodb.TRACE[2025-03-15 16:04:05.850][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b7c920ea46a15bb7175f778579142c91.request"
biodb.TRACE[2025-03-15 16:04:05.852][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9710.xml"
biodb.DEBUG[2025-03-15 16:04:05.854][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:04:05.855][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:04:05.856][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:04:05.857][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:05.857][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:05.858][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:05.863][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:05.864][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:05.865][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:05.866][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:05.867][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:05.868][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:05.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:05.870][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:05.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:05.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:05.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:05.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:05.874][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:05.875][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:05.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:05.876][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:05.877][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:05.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:05.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:05.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:05.881][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:05.882][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:05.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:05.884][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:05.885][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:05.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:05.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:05.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:05.889][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:05.890][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:05.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:05.891][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:05.892][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:05.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:05.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:05.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:05.896][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:05.897][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:05.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:05.898][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:05.899][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:05.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:05.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:05.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:05.903][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:05.904][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:05.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:05.905][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:05.906][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:05.907][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:05.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:05.909][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:05.910][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:05.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:05.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:05.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:05.913][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:05.914][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:05.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:05.915][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:05.916][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:05.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:05.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:05.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:05.920][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:05.920][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:05.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:05.922][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:05.923][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:05.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:05.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:05.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:05.927][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:05.927][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:05.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:05.929][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:05.930][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:05.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:05.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:05.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:05.933][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:05.934][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:05.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:05.936][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:05.937][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:05.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:05.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:05.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:05.941][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:05.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:05.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:05.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:05.944][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:05.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:05.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:05.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:05.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:05.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:05.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:05.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:05.950][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:05.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:05.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:05.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:05.953][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:05.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:05.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:05.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:05.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:05.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:05.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:05.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:05.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:05.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:05.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:05.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:05.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:05.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:05.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:05.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:05.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:05.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:05.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:05.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:05.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:05.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:05.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:05.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:05.972][self$createEntryFromContent] Accession numbers: 9710.
biodb.TRACE[2025-03-15 16:04:05.973][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:05.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:05.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:05.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:05.977][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:05.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:05.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:05.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:05.980][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:05.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:05.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:05.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:05.984][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:05.985][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:05.985][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:06.001][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:06.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:06.003][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:06.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:06.005][private$loadEntries] Creating entries from ids [1]: "65530".
biodb.DEBUG[2025-03-15 16:04:06.005][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:04:06.007][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65530".
biodb.TRACE[2025-03-15 16:04:06.008][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:04:06.009][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:04:06.010][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:04:06.011][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:04:06.011][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:04:06.012][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:04:06.014][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:06.015][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:06.016][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:06.021][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:06.021][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:06.022][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:06.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:06.024][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65530".
biodb.DEBUG[2025-03-15 16:04:06.026][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:04:06.027][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:04:06.028][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65530".
biodb.TRACE[2025-03-15 16:04:06.384][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65530).
biodb.DEBUG[2025-03-15 16:04:06.752][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:04:06.754][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bb7ff6c0bdfa280406af23f96ee06f80.content"
biodb.TRACE[2025-03-15 16:04:06.757][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bb7ff6c0bdfa280406af23f96ee06f80.request"
biodb.TRACE[2025-03-15 16:04:06.760][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65530.xml"
biodb.DEBUG[2025-03-15 16:04:06.762][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:04:06.763][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:04:06.764][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:04:06.765][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:06.766][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:06.766][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:06.771][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:06.772][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:06.773][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:06.774][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:06.776][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:06.777][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:06.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:06.778][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:06.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:06.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:06.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:06.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:06.783][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:06.784][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:06.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:06.785][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:06.786][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:06.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:06.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:06.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:06.790][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:06.791][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:06.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:06.792][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:06.793][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:06.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:06.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:06.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:06.797][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:06.797][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:06.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:06.799][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:06.800][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:06.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:06.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:06.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:06.803][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:06.804][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:06.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:06.805][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:06.806][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:06.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:06.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:06.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:06.810][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:06.811][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:06.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:06.812][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:06.813][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:06.814][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:06.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:06.816][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:06.817][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:06.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:06.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:06.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:06.820][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:06.821][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:06.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:06.823][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:06.824][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:06.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:06.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:06.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:06.827][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:06.828][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:06.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:06.830][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:06.831][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:06.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:06.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:06.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:06.834][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:06.835][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:06.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:06.837][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:06.838][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:06.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:06.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:06.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:06.841][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:06.842][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:06.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:06.843][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:06.845][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:06.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:06.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:06.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:06.848][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:06.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:06.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:06.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:06.851][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:06.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:06.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:06.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:06.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:06.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:06.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:06.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:06.857][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:06.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:06.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:06.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:06.860][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:06.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:06.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:06.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:06.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:06.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:06.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:06.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:06.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:06.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:06.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:06.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:06.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:06.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:06.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:06.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:06.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:06.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:06.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:06.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:06.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:06.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:06.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:06.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:06.878][self$createEntryFromContent] Accession numbers: 65530.
biodb.TRACE[2025-03-15 16:04:06.879][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:06.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:06.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:06.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:06.882][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:06.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:06.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:06.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:06.885][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:06.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:06.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:06.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:06.888][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:06.889][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:06.890][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:06.894][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:06.895][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:06.896][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:06.896][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:06.897][private$loadEntries] Creating entries from ids [1]: "72338".
biodb.DEBUG[2025-03-15 16:04:06.898][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:04:06.899][cch$loadFileContent] Trying to load 1 files from cache: [1]: "72338".
biodb.TRACE[2025-03-15 16:04:06.900][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:04:06.901][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:04:06.902][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:04:06.903][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:04:06.904][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:04:06.904][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:04:06.907][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:06.907][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:06.908][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:06.913][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:06.913][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:06.914][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:06.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:06.916][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=72338".
biodb.DEBUG[2025-03-15 16:04:06.918][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:04:06.918][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:04:06.919][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=72338".
biodb.TRACE[2025-03-15 16:04:07.283][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=72338).
biodb.DEBUG[2025-03-15 16:04:07.638][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:04:07.640][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e64dda61e0a44a21c5b0eb3609a4a7b.content"
biodb.TRACE[2025-03-15 16:04:07.643][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e64dda61e0a44a21c5b0eb3609a4a7b.request"
biodb.TRACE[2025-03-15 16:04:07.645][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/72338.xml"
biodb.DEBUG[2025-03-15 16:04:07.647][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:04:07.648][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:04:07.649][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:04:07.650][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:07.651][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:07.651][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:07.656][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:07.656][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:07.657][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:07.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:07.660][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:07.660][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:07.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:07.662][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:07.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:07.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:07.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:07.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:07.666][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:07.667][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:07.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:07.668][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:07.669][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:07.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:07.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:07.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:07.672][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:07.673][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:07.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:07.675][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:07.676][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:07.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:07.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:07.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:07.679][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:07.680][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:07.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:07.682][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:07.683][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:07.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:07.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:07.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:07.686][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:07.687][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:07.687][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:07.688][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:07.689][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:07.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:07.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:07.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:07.693][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:07.693][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:07.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:07.695][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:07.696][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:07.696][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:07.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:07.698][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:07.699][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:07.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:07.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:07.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:07.702][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:07.703][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:07.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:07.704][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:07.705][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:07.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:07.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:07.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:07.708][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:07.709][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:07.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:07.710][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:07.711][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:07.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:07.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:07.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:07.715][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:07.716][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:07.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:07.717][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:07.718][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:07.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:07.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:07.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:07.722][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:07.722][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:07.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:07.729][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:07.735][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:07.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:07.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:07.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:07.738][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:07.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:07.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:07.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:07.741][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:07.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:07.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:07.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:07.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:07.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:07.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:07.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:07.747][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:07.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:07.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:07.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:07.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:07.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:07.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:07.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:07.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:07.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:07.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:07.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:07.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:07.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:07.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:07.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:07.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:07.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:07.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:07.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:07.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:07.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:07.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:07.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:07.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:07.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:07.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:07.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:07.770][self$createEntryFromContent] Accession numbers: 72338.
biodb.TRACE[2025-03-15 16:04:07.771][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:07.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:07.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:07.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:07.774][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:07.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:07.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:07.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:07.777][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:07.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:07.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:07.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:07.780][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:07.781][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:07.782][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:07.787][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:07.788][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:07.789][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:07.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:07.790][private$loadEntries] Creating entries from ids [1]: "77926".
biodb.DEBUG[2025-03-15 16:04:07.791][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:04:07.792][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77926".
biodb.TRACE[2025-03-15 16:04:07.793][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:04:07.794][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:04:07.795][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:04:07.796][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:04:07.796][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:04:07.797][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:04:07.799][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:07.800][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:07.801][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:07.806][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:07.806][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:07.807][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:07.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:07.809][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77926".
biodb.DEBUG[2025-03-15 16:04:07.811][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:04:07.812][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:04:07.813][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77926".
biodb.TRACE[2025-03-15 16:04:08.179][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77926).
biodb.DEBUG[2025-03-15 16:04:08.565][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:04:08.568][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9ad4fcb4fcba98dcbec5ee6292352f7b.content"
biodb.TRACE[2025-03-15 16:04:08.571][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9ad4fcb4fcba98dcbec5ee6292352f7b.request"
biodb.TRACE[2025-03-15 16:04:08.573][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77926.xml"
biodb.DEBUG[2025-03-15 16:04:08.575][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:04:08.576][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:04:08.577][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:04:08.579][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:08.580][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:08.580][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:08.586][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:08.586][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:08.587][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:08.588][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:08.590][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:08.591][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:08.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:08.593][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:08.594][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:08.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:08.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:08.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:08.598][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:08.599][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:08.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:08.600][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:08.601][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:08.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:08.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:08.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:08.605][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:08.606][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:08.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:08.607][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:08.608][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:08.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:08.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:08.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:08.612][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:08.613][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:08.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:08.614][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:08.615][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:08.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:08.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:08.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:08.619][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:08.620][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:08.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:08.621][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:08.623][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:08.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:08.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:08.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:08.626][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:08.627][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:08.628][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:08.629][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:08.630][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:08.631][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:08.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:08.632][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:08.633][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:08.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:08.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:08.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:08.637][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:08.638][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:08.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:08.639][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:08.640][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:08.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:08.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:08.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:08.644][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:08.645][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:08.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:08.646][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:08.647][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:08.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:08.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:08.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:08.651][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:08.652][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:08.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:08.653][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:08.654][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:08.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:08.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:08.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:08.658][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:08.659][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:08.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:08.661][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:08.662][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:08.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:08.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:08.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:08.665][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:08.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:08.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:08.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:08.668][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:08.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:08.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:08.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:08.672][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:08.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:08.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:08.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:08.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:08.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:08.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:08.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:08.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:08.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:08.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:08.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:08.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:08.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:08.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:08.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:08.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:08.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:08.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:08.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:08.689][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:08.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:08.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:08.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:08.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:08.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:08.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:08.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:08.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:08.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:08.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:08.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:08.699][self$createEntryFromContent] Accession numbers: 77926.
biodb.TRACE[2025-03-15 16:04:08.700][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:08.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:08.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:08.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:08.703][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:08.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:08.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:08.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:08.706][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:08.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:08.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:08.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:08.710][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:08.710][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:08.711][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:08.716][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:08.717][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:08.718][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:08.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:08.719][private$loadEntries] Creating entries from ids [1]: "82369".
biodb.DEBUG[2025-03-15 16:04:08.720][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:04:08.721][cch$loadFileContent] Trying to load 1 files from cache: [1]: "82369".
biodb.TRACE[2025-03-15 16:04:08.722][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:04:08.724][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:04:08.725][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:04:08.725][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:04:08.726][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:04:08.727][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:04:08.729][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:08.730][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:08.731][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:08.736][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:08.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:08.737][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:08.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:08.739][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=82369".
biodb.DEBUG[2025-03-15 16:04:08.741][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:04:08.742][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:04:08.743][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=82369".
biodb.TRACE[2025-03-15 16:04:09.099][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=82369).
biodb.DEBUG[2025-03-15 16:04:09.465][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:04:09.467][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/141011223a89b45316c20d1fd91b47fd.content"
biodb.TRACE[2025-03-15 16:04:09.470][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/141011223a89b45316c20d1fd91b47fd.request"
biodb.TRACE[2025-03-15 16:04:09.472][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/82369.xml"
biodb.DEBUG[2025-03-15 16:04:09.474][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:04:09.475][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:04:09.476][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:04:09.477][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:09.478][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:09.478][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:09.483][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:09.484][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:09.485][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:09.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:09.488][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:09.489][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:09.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:09.490][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:09.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:09.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:09.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:09.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:09.494][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:09.495][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:09.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:09.497][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:09.498][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:09.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:09.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:09.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:09.501][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:09.513][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:09.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:09.515][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:09.516][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:09.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:09.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:09.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:09.537][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:09.538][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:09.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:09.539][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:09.540][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:09.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:09.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:09.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:09.543][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:09.544][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:09.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:09.545][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:09.546][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:09.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:09.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:09.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:09.550][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:09.551][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:09.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:09.552][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:09.553][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:09.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:09.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:09.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:09.556][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:09.557][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:09.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:09.559][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:09.560][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:09.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:09.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:09.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:09.569][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:09.570][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:09.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:09.572][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:09.573][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:09.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:09.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:09.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:09.576][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:09.577][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:09.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:09.578][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:09.580][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:09.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:09.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:09.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:09.583][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:09.584][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:09.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:09.585][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:09.586][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:09.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:09.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:09.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:09.590][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:09.591][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:09.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:09.592][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:09.593][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:09.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:09.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:09.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:09.596][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:09.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:09.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:09.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:09.599][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:09.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:09.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:09.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:09.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:09.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:09.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:09.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:09.606][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:09.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:09.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:09.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:09.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:09.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:09.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:09.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:09.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:09.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:09.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:09.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:09.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:09.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:09.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:09.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:09.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:09.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:09.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:09.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:09.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:09.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:09.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:09.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:09.625][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:09.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:09.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:09.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:09.629][self$createEntryFromContent] Accession numbers: 82369.
biodb.TRACE[2025-03-15 16:04:09.630][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:09.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:09.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:09.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:09.633][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:09.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:09.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:09.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:09.636][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:09.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:09.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:09.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:09.640][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:09.640][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:09.641][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:09.646][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:09.647][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:09.648][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:09.648][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:09.649][private$loadEntries] Creating entries from ids [1]: "90204".
biodb.DEBUG[2025-03-15 16:04:09.650][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:04:09.652][cch$loadFileContent] Trying to load 1 files from cache: [1]: "90204".
biodb.TRACE[2025-03-15 16:04:09.653][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:04:09.653][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:04:09.654][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:04:09.655][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:04:09.656][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:04:09.657][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:04:09.659][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:09.660][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:09.660][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:09.665][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:09.666][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:09.667][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:09.668][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:09.669][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=90204".
biodb.DEBUG[2025-03-15 16:04:09.671][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:04:09.672][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:04:09.673][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=90204".
biodb.TRACE[2025-03-15 16:04:10.063][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=90204).
biodb.DEBUG[2025-03-15 16:04:10.428][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:04:10.430][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bd50d349ae7e6e2bbccffc7e4e5f18de.content"
biodb.TRACE[2025-03-15 16:04:10.433][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bd50d349ae7e6e2bbccffc7e4e5f18de.request"
biodb.TRACE[2025-03-15 16:04:10.435][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/90204.xml"
biodb.DEBUG[2025-03-15 16:04:10.437][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:04:10.437][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:04:10.439][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:04:10.440][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:10.441][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:10.441][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:10.446][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:10.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:10.447][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:10.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:10.450][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:10.451][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:10.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:10.452][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:10.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:10.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:10.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:10.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:10.456][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:10.457][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:10.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:10.458][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:10.459][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:10.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:10.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:10.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:10.462][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:10.463][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:10.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:10.465][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:10.466][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:10.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:10.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:10.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:10.469][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:10.470][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:10.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:10.472][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:10.473][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:10.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:10.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:10.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:10.476][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:10.477][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:10.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:10.479][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:10.480][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:10.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:10.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:10.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:10.483][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:10.484][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:10.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:10.486][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:10.487][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:10.488][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:10.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:10.489][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:10.490][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:10.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:10.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:10.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:10.493][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:10.494][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:10.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:10.496][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:10.497][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:10.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:10.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:10.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:10.500][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:10.501][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:10.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:10.502][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:10.504][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:10.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:10.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:10.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:10.507][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:10.508][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:10.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:10.509][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:10.510][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:10.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:10.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:10.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:10.513][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:10.514][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:10.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:10.515][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:10.516][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:10.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:10.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:10.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:10.519][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:10.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:10.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:10.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:10.523][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:10.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:10.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:10.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:10.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:10.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:10.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:10.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:10.529][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:10.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:10.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:10.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:10.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:10.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:10.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:10.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:10.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:10.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:10.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:10.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:10.538][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:10.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:10.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:10.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:10.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:10.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:10.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:10.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:10.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:10.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:10.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:10.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:10.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:10.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:10.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:10.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:10.550][self$createEntryFromContent] Accession numbers: 90204.
biodb.TRACE[2025-03-15 16:04:10.550][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:10.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:10.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:10.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:10.553][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:10.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:10.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:10.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:10.556][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:10.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:10.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:10.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:10.559][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:10.560][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:10.561][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:10.566][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:10.566][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:10.567][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:10.568][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:10.569][private$loadEntries] Creating entries from ids [1]: "132793".
biodb.DEBUG[2025-03-15 16:04:10.577][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:04:10.579][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132793".
biodb.TRACE[2025-03-15 16:04:10.580][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:04:10.581][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:04:10.581][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:04:10.582][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:04:10.583][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:04:10.584][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:04:10.586][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:10.586][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:10.587][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:10.591][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:10.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:10.593][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:10.593][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:10.594][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132793".
biodb.DEBUG[2025-03-15 16:04:10.596][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:04:10.597][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:04:10.598][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132793".
biodb.TRACE[2025-03-15 16:04:10.955][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132793).
biodb.DEBUG[2025-03-15 16:04:11.327][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:04:11.329][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a797bec3bbec3ca7a5b4b96140b735a3.content"
biodb.TRACE[2025-03-15 16:04:11.332][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a797bec3bbec3ca7a5b4b96140b735a3.request"
biodb.TRACE[2025-03-15 16:04:11.333][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132793.xml"
biodb.DEBUG[2025-03-15 16:04:11.335][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:04:11.336][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:04:11.337][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:04:11.338][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:11.339][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:11.339][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:11.344][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:11.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:11.346][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:11.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:11.348][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:11.349][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:11.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:11.351][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:11.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:11.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:11.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:11.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:11.355][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:11.356][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:11.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:11.357][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:11.358][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:11.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:11.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:11.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:11.361][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:11.362][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:11.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:11.364][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:11.365][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:11.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:11.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:11.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:11.368][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:11.369][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:11.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:11.370][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:11.371][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:11.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:11.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:11.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:11.374][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:11.375][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:11.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:11.377][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:11.378][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:11.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:11.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:11.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:11.380][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:11.381][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:11.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:11.383][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:11.384][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:11.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:11.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:11.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:11.387][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:11.388][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:11.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:11.389][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:11.390][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:11.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:11.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:11.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:11.394][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:11.394][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:11.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:11.396][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:11.397][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:11.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:11.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:11.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:11.400][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:11.401][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:11.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:11.402][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:11.403][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:11.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:11.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:11.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:11.407][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:11.408][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:11.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:11.409][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:11.410][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:11.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:11.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:11.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:11.413][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:11.414][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:11.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:11.416][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:11.417][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:11.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:11.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:11.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:11.421][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:11.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:11.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:11.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:11.424][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:11.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:11.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:11.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:11.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:11.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:11.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:11.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:11.430][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:11.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:11.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:11.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:11.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:11.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:11.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:11.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:11.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:11.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:11.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:11.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:11.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:11.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:11.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:11.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:11.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:11.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:11.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:11.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:11.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:11.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:11.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:11.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:11.449][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:11.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:11.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:11.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:11.452][self$createEntryFromContent] Accession numbers: 132793.
biodb.TRACE[2025-03-15 16:04:11.453][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:11.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:11.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:11.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:11.457][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:11.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:11.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:11.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:11.460][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:11.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:11.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:11.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:11.463][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:04:11.464][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:11.465][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:11.466][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:11.471][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:11.472][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:11.473][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:11.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:11.475][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:11.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:11.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:11.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:11.478][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:11.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:11.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:11.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:11.481][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:11.482][private$selectFields]
biodb.TRACE[2025-03-15 16:04:11.482][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:11.483][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:11.484][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:11.484][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:11.485][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:11.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:11.487][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:11.488][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:11.489][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:11.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:11.490][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:11.491][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:11.492][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:11.493][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:11.494][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:11.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:11.495][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:11.496][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:11.496][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:11.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:11.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:11.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:11.500][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:11.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:11.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:11.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:11.503][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:11.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:11.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:11.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:11.506][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65530].
biodb.DEBUG[2025-03-15 16:04:11.507][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:11.508][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:11.509][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:11.514][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:11.515][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:11.515][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:11.516][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:11.517][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:11.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:11.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:11.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:11.520][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:11.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:11.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:11.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:11.524][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:11.524][private$selectFields]
biodb.TRACE[2025-03-15 16:04:11.525][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:11.526][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:11.527][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:11.528][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:11.529][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:11.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:11.530][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:11.531][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:11.532][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:11.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:11.533][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:11.534][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:11.535][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:11.536][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:11.537][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:11.537][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:11.538][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:11.539][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:11.540][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:11.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:11.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:11.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:11.543][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:11.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:11.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:11.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:11.546][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:11.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:11.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:11.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:11.550][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [90204].
biodb.DEBUG[2025-03-15 16:04:11.551][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:11.552][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:11.552][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:11.557][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:11.558][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:11.559][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:11.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:11.560][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:11.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:11.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:11.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:11.564][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:11.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:11.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:11.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:11.567][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:11.567][private$selectFields]
biodb.TRACE[2025-03-15 16:04:11.568][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:11.569][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:11.569][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:11.570][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:11.571][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:11.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:11.573][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:11.574][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:11.575][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:11.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:11.576][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:11.577][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:11.578][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:11.579][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:11.580][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:11.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:11.581][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:11.582][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:11.583][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:11.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:11.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:11.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:11.594][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:11.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:11.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:11.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:11.598][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:11.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:11.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:11.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:11.601][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132793].
biodb.DEBUG[2025-03-15 16:04:11.602][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:04:11.603][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:04:11.604][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:11.605][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:11.606][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:11.610][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:11.611][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:11.612][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:11.613][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:11.615][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:04:11.618][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:04:11.618][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:04:11.620][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-03-15 16:04:11.977][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-03-15 16:04:12.332][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:04:12.333][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9686ce9c957a368dd8f5b4cc9c5b15b3.content"
biodb.TRACE[2025-03-15 16:04:12.337][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9686ce9c957a368dd8f5b4cc9c5b15b3.request"
biodb.DEBUG[2025-03-15 16:04:12.339][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:12.340][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:12.341][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:12.346][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:12.347][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:12.347][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:12.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:12.349][private$loadEntries] Creating entries from ids [1]: "131378".
biodb.DEBUG[2025-03-15 16:04:12.350][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:04:12.351][cch$loadFileContent] Trying to load 1 files from cache: [1]: "131378".
biodb.TRACE[2025-03-15 16:04:12.352][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:04:12.353][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:04:12.354][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:04:12.355][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:04:12.356][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:04:12.357][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:04:12.359][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:12.360][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:12.360][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:12.365][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:12.366][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:12.367][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:12.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:12.368][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=131378".
biodb.DEBUG[2025-03-15 16:04:12.371][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:04:12.371][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:04:12.372][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=131378".
biodb.TRACE[2025-03-15 16:04:12.738][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=131378).
biodb.DEBUG[2025-03-15 16:04:13.109][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:04:13.111][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5b759b1dd2dc96585e60782e41aa0772.content"
biodb.TRACE[2025-03-15 16:04:13.114][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5b759b1dd2dc96585e60782e41aa0772.request"
biodb.TRACE[2025-03-15 16:04:13.117][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/131378.xml"
biodb.DEBUG[2025-03-15 16:04:13.118][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:04:13.119][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:04:13.120][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:04:13.122][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:13.122][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:13.123][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:13.128][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:13.129][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:13.130][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:13.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:13.132][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:13.133][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:13.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:13.135][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:13.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:13.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:13.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:13.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:13.139][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:13.140][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:13.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:13.142][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:13.143][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:13.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:13.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:13.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:13.147][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:13.148][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:13.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:13.149][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:13.150][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:13.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:13.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:13.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:13.154][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:13.155][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:13.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:13.156][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:13.157][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:13.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:13.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:13.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:13.160][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:13.161][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:13.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:13.163][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:13.164][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:13.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:13.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:13.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:13.167][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:13.168][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:13.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:13.169][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:13.170][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:13.171][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:13.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:13.172][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:13.173][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:13.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:13.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:13.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:13.176][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:13.177][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:13.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:13.179][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:13.180][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:13.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:13.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:13.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:13.183][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:13.184][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:13.185][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:13.186][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:13.187][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:13.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:13.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:13.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:13.190][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:13.191][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:13.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:13.192][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:13.193][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:13.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:13.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:13.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:13.196][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:13.197][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:13.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:13.198][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:13.199][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:13.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:13.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:13.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:13.203][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:13.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:13.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:13.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:13.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:13.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:13.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:13.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:13.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:13.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:13.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:13.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:13.212][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:13.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:13.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:13.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:13.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:13.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:13.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:13.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:13.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:13.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:13.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:13.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:13.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:13.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:13.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:13.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:13.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:13.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:13.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:13.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:13.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:13.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:13.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:13.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:13.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:13.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:13.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:13.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:13.235][self$createEntryFromContent] Accession numbers: 131378.
biodb.TRACE[2025-03-15 16:04:13.236][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:13.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:13.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:13.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:13.240][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:13.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:13.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:13.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:13.243][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:13.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:13.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:13.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:13.246][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:13.247][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:13.248][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:13.253][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:13.254][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:13.254][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:13.255][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:13.256][private$loadEntries] Creating entries from ids [1]: "214202".
biodb.DEBUG[2025-03-15 16:04:13.257][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:04:13.258][cch$loadFileContent] Trying to load 1 files from cache: [1]: "214202".
biodb.TRACE[2025-03-15 16:04:13.259][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:04:13.260][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:04:13.261][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:04:13.262][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:04:13.263][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:04:13.263][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:04:13.266][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:13.267][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:13.267][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:13.272][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:13.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:13.274][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:13.274][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:13.275][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=214202".
biodb.DEBUG[2025-03-15 16:04:13.278][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:04:13.279][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:04:13.280][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=214202".
biodb.TRACE[2025-03-15 16:04:13.640][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=214202).
biodb.DEBUG[2025-03-15 16:04:14.018][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:04:14.020][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf9a3fb7c59af59e06fd510ceb170574.content"
biodb.TRACE[2025-03-15 16:04:14.022][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf9a3fb7c59af59e06fd510ceb170574.request"
biodb.TRACE[2025-03-15 16:04:14.025][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/214202.xml"
biodb.DEBUG[2025-03-15 16:04:14.026][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:04:14.027][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:04:14.028][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:04:14.029][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:14.029][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:14.030][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:14.035][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:14.035][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:14.036][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:14.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:14.039][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:14.040][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:14.040][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:14.041][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:14.042][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:14.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:14.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:14.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:14.045][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:14.046][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:14.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:14.047][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:14.048][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:14.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:14.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:14.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:14.051][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:14.052][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:14.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:14.053][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:14.055][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:14.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:14.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:14.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:14.057][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:14.058][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:14.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:14.060][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:14.061][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:14.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:14.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:14.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:14.076][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:14.077][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:14.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:14.078][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:14.079][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:14.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:14.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:14.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:14.082][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:14.083][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:14.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:14.084][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:14.085][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:14.086][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:14.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:14.087][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:14.088][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:14.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:14.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:14.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:14.091][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:14.091][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:14.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:14.093][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:14.094][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:14.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:14.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:14.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:14.096][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:14.097][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:14.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:14.098][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:14.099][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:14.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:14.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:14.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:14.102][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:14.103][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:14.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:14.104][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:14.105][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:14.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:14.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:14.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:14.108][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:14.109][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:14.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:14.110][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:14.111][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:14.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:14.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:14.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:14.114][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:14.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:14.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:14.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:14.116][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:14.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:14.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:14.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:14.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:14.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:14.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:14.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:14.122][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:14.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:14.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:14.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:14.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:14.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:14.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:14.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:14.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:14.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:14.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:14.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:14.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:14.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:14.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:14.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:14.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:14.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:14.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:14.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:14.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:14.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:14.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:14.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:14.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:14.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:14.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:14.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:14.144][self$createEntryFromContent] Accession numbers: 214202.
biodb.TRACE[2025-03-15 16:04:14.144][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:14.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:14.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:14.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:14.147][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:14.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:14.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:14.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:14.150][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:14.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:14.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:14.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:14.154][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:04:14.156][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:04:14.157][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:04:14.158][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-03-15 16:04:14.555][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-03-15 16:04:14.930][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:04:14.932][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5d833e77a1be58060d0c3916a1e1b293.content"
biodb.TRACE[2025-03-15 16:04:14.935][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5d833e77a1be58060d0c3916a1e1b293.request"
biodb.DEBUG[2025-03-15 16:04:14.938][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:14.939][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:14.939][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:14.944][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:14.945][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:14.946][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:14.947][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:14.948][private$loadEntries] Creating entries from ids [1]: "51836".
biodb.DEBUG[2025-03-15 16:04:14.948][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:04:14.950][cch$loadFileContent] Trying to load 1 files from cache: [1]: "51836".
biodb.TRACE[2025-03-15 16:04:14.951][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:04:14.951][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:04:14.952][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:04:14.953][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:04:14.954][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:04:14.955][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:04:14.957][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:14.958][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:14.958][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:14.963][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:14.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:14.965][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:14.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:14.967][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51836".
biodb.DEBUG[2025-03-15 16:04:14.969][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:04:14.970][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:04:14.971][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51836".
biodb.TRACE[2025-03-15 16:04:15.330][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51836).
biodb.DEBUG[2025-03-15 16:04:15.709][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:04:15.711][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1fe2079ad59bca4bc82b2cd14ed8e8a1.content"
biodb.TRACE[2025-03-15 16:04:15.714][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1fe2079ad59bca4bc82b2cd14ed8e8a1.request"
biodb.TRACE[2025-03-15 16:04:15.716][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51836.xml"
biodb.DEBUG[2025-03-15 16:04:15.717][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:04:15.718][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:04:15.720][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:04:15.721][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:15.722][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:15.722][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:15.727][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:15.728][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:15.729][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:15.730][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:15.732][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:15.733][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:15.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:15.734][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:15.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:15.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:15.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:15.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:15.738][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:15.739][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:15.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:15.741][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:15.742][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:15.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:15.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:15.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:15.745][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:15.746][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:15.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:15.747][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:15.748][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:15.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:15.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:15.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:15.752][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:15.753][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:15.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:15.754][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:15.755][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:15.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:15.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:15.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:15.758][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:15.759][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:15.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:15.761][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:15.762][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:15.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:15.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:15.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:15.765][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:15.766][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:15.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:15.767][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:15.768][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:15.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:15.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:15.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:15.772][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:15.772][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:15.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:15.774][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:15.775][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:15.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:15.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:15.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:15.778][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:15.779][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:15.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:15.780][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:15.781][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:15.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:15.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:15.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:15.784][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:15.785][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:15.786][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:15.787][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:15.788][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:15.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:15.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:15.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:15.791][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:15.792][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:15.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:15.794][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:15.795][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:15.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:15.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:15.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:15.798][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:15.799][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:15.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:15.800][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:15.802][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:15.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:15.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:15.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:15.805][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:15.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:15.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:15.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:15.808][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:15.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:15.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:15.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:15.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:15.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:15.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:15.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:15.815][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:15.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:15.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:15.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:15.818][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:15.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:15.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:15.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:15.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:15.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:15.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:15.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:15.824][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:15.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:15.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:15.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:15.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:15.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:15.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:15.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:15.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:15.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:15.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:15.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:15.834][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:15.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:15.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:15.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:15.838][self$createEntryFromContent] Accession numbers: 51836.
biodb.TRACE[2025-03-15 16:04:15.839][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:15.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:15.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:15.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:15.842][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:15.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:15.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:15.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:15.845][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:15.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:15.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:15.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:15.848][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:15.849][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:15.849][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:15.865][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:15.866][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:15.867][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:15.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:15.868][private$loadEntries] Creating entries from ids [1]: "51837".
biodb.DEBUG[2025-03-15 16:04:15.869][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:04:15.870][cch$loadFileContent] Trying to load 1 files from cache: [1]: "51837".
biodb.TRACE[2025-03-15 16:04:15.871][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:04:15.872][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:04:15.873][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:04:15.874][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:04:15.875][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:04:15.875][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:04:15.878][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:15.878][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:15.879][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:15.884][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:15.885][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:15.885][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:15.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:15.887][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51837".
biodb.DEBUG[2025-03-15 16:04:15.890][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:04:15.891][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:04:15.892][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51837".
biodb.TRACE[2025-03-15 16:04:16.248][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51837).
biodb.DEBUG[2025-03-15 16:04:16.629][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:04:16.631][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1588f004fb5de8667ae1af7433b2932e.content"
biodb.TRACE[2025-03-15 16:04:16.633][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1588f004fb5de8667ae1af7433b2932e.request"
biodb.TRACE[2025-03-15 16:04:16.636][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51837.xml"
biodb.DEBUG[2025-03-15 16:04:16.637][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:04:16.638][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:04:16.639][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:04:16.640][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:16.641][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:16.642][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:16.646][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:16.647][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:16.648][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:16.648][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:16.650][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:16.651][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:16.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:16.653][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:16.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:16.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:16.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:16.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:16.657][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:16.658][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:16.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:16.660][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:16.661][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:16.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:16.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:16.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:16.664][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:16.665][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:16.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:16.667][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:16.668][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:16.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:16.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:16.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:16.671][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:16.672][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:16.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:16.674][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:16.675][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:16.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:16.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:16.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:16.678][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:16.679][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:16.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:16.681][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:16.682][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:16.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:16.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:16.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:16.685][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:16.686][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:16.687][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:16.687][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:16.688][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:16.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:16.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:16.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:16.692][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:16.692][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:16.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:16.694][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:16.695][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:16.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:16.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:16.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:16.698][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:16.699][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:16.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:16.700][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:16.702][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:16.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:16.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:16.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:16.705][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:16.706][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:16.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:16.707][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:16.708][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:16.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:16.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:16.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:16.712][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:16.713][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:16.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:16.714][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:16.716][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:16.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:16.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:16.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:16.719][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:16.720][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:16.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:16.721][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:16.722][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:16.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:16.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:16.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:16.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:16.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:16.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:16.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:16.729][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:16.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:16.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:16.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:16.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:16.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:16.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:16.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:16.736][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:16.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:16.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:16.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:16.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:16.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:16.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:16.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:16.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:16.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:16.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:16.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:16.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:16.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:16.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:16.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:16.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:16.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:16.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:16.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:16.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:16.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:16.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:16.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:16.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:16.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:16.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:16.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:16.758][self$createEntryFromContent] Accession numbers: 51837.
biodb.TRACE[2025-03-15 16:04:16.759][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:16.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:16.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:16.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:16.762][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:16.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:16.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:16.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:16.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:16.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:16.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:16.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:16.769][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:16.770][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:16.770][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:16.775][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:16.776][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:16.777][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:16.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:16.778][private$loadEntries] Creating entries from ids [1]: "132205".
biodb.DEBUG[2025-03-15 16:04:16.779][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:04:16.780][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132205".
biodb.TRACE[2025-03-15 16:04:16.781][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:04:16.782][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:04:16.783][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:04:16.784][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:04:16.785][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:04:16.786][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:04:16.788][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:16.788][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:16.789][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:16.794][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:16.795][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:16.796][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:16.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:16.797][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132205".
biodb.DEBUG[2025-03-15 16:04:16.799][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:04:16.800][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:04:16.801][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132205".
biodb.TRACE[2025-03-15 16:04:17.168][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132205).
biodb.DEBUG[2025-03-15 16:04:17.537][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:04:17.539][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bfa2ac1d845d7db5b781e9a39528bb3.content"
biodb.TRACE[2025-03-15 16:04:17.542][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bfa2ac1d845d7db5b781e9a39528bb3.request"
biodb.TRACE[2025-03-15 16:04:17.544][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132205.xml"
biodb.DEBUG[2025-03-15 16:04:17.545][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:04:17.546][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:04:17.547][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:04:17.548][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:17.549][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:17.550][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:17.555][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:17.556][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:17.556][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:17.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:17.559][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:17.559][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:17.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.561][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:17.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:17.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.565][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:17.566][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:17.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.567][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.568][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:17.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:17.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.571][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:17.572][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:17.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.574][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.575][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:17.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:17.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.578][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:17.578][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:17.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.580][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.581][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:17.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:17.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.584][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:17.585][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:17.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.587][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.588][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:17.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:17.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.591][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:17.592][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:17.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.593][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.594][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:17.595][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:17.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.597][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.598][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:17.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:17.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.601][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:17.602][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:17.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.603][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.604][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:17.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:17.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.608][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:17.608][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:17.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.610][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.611][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:17.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:17.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.614][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:17.615][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:17.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.616][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.622][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:17.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:17.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.631][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:17.631][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:17.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.633][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.634][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:17.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:17.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.638][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.641][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.644][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:17.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:17.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.647][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:17.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:17.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:17.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:17.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:17.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:17.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.659][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:17.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:17.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.662][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:17.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:17.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:17.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:17.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:17.668][self$createEntryFromContent] Accession numbers: 132205.
biodb.TRACE[2025-03-15 16:04:17.669][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:17.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:17.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.672][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:17.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:17.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.675][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:17.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:17.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:17.678][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:04:17.680][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:17.680][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:17.681][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:17.686][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:17.687][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:17.688][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:17.688][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:17.689][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.693][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.696][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:17.697][private$selectFields]
biodb.TRACE[2025-03-15 16:04:17.697][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:17.698][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:17.699][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:17.700][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.701][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.702][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.703][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.704][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.705][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.706][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:17.707][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:17.708][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.709][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.710][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.711][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:17.711][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.714][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.717][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.721][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51836].
biodb.DEBUG[2025-03-15 16:04:17.721][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:17.722][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:17.723][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:17.728][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:17.728][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:17.729][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:17.730][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:17.731][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.734][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.737][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:17.738][private$selectFields]
biodb.TRACE[2025-03-15 16:04:17.738][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:17.739][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:17.740][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:17.741][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.742][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.743][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.744][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.745][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.746][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.747][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:17.747][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:17.748][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.749][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.750][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.751][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:17.752][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.755][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.758][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.761][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51837].
biodb.DEBUG[2025-03-15 16:04:17.762][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:17.762][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:17.763][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:17.768][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:17.768][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:17.769][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:17.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:17.770][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.773][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.776][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:17.777][private$selectFields]
biodb.TRACE[2025-03-15 16:04:17.778][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:17.779][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:17.780][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:17.780][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.781][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.783][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.783][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.784][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.786][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.787][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:17.787][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:17.788][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.789][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.791][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.791][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:17.792][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.795][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.802][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132205].
biodb.DEBUG[2025-03-15 16:04:17.803][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:04:17.804][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:04:17.823][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:17.824][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:17.824][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:17.829][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:17.830][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:17.830][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:17.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:17.833][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:04:17.836][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:04:17.837][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-03-15 16:04:17.838][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:04:17.839][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-03-15 16:04:17.841][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:17.842][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:17.843][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:17.847][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:17.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:17.849][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:17.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:17.850][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:17.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:17.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.854][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:17.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:17.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.857][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:17.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:17.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:17.860][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:04:17.863][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:04:17.864][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-03-15 16:04:17.865][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:04:17.866][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-03-15 16:04:17.868][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:17.869][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:17.869][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:17.874][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:17.875][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:17.876][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:17.876][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:17.877][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:17.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:17.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.881][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:17.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:17.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.884][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:17.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:17.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:17.887][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:17.888][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:17.888][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:17.893][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:17.894][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:17.895][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:17.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:17.897][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:17.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:17.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.900][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:17.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:17.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.903][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:17.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:17.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:17.906][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:04:17.907][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:17.913][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:17.915][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:17.920][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:17.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:17.921][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:17.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:17.923][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.926][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.930][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:17.930][private$selectFields]
biodb.TRACE[2025-03-15 16:04:17.931][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:17.932][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:17.933][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:17.934][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.934][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.936][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.937][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.938][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.939][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.940][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:17.941][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:17.942][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.943][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.944][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.945][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:17.946][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.949][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.952][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.956][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-03-15 16:04:17.957][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:17.958][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:17.958][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:17.963][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:17.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:17.965][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:17.965][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:17.966][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.970][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.973][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:17.974][private$selectFields]
biodb.TRACE[2025-03-15 16:04:17.975][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:17.976][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:17.977][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:17.977][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.978][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.980][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.981][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.982][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.983][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.985][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:17.985][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:17.986][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.987][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.989][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.989][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:17.990][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.994][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:17.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:17.997][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:17.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.001][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-03-15 16:04:18.002][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:18.002][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:18.003][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:18.008][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:18.009][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:18.010][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:18.010][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:18.012][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.015][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.018][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:18.019][private$selectFields]
biodb.TRACE[2025-03-15 16:04:18.020][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:18.021][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:18.022][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:18.022][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.023][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.025][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.026][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.027][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.029][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.029][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:18.030][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:18.031][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.032][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.034][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.034][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:18.035][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.039][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.042][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.045][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-03-15 16:04:18.046][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:04:18.047][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:04:18.049][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:18.050][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:18.050][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:18.055][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:18.056][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:18.057][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:18.057][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:18.059][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:04:18.062][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:04:18.063][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2025-03-15 16:04:18.064][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:04:18.065][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2025-03-15 16:04:18.067][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:18.068][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:18.069][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:18.074][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:18.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:18.075][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:18.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:18.077][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.080][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.083][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:18.086][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:18.087][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:18.088][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:18.107][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:18.108][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:18.108][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:18.109][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:18.110][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.113][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.123][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:18.127][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:04:18.129][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:04:18.130][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2025-03-15 16:04:18.131][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:04:18.133][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2025-03-15 16:04:18.135][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:18.136][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:18.136][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:18.141][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:18.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:18.143][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:18.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:18.144][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.147][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.150][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:18.154][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:18.154][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:18.155][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:18.161][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:18.161][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:18.162][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:18.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:18.164][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.168][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.171][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:18.174][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:18.175][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:18.175][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:18.180][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:18.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:18.182][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:18.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:18.184][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.187][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.190][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:18.194][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:04:18.195][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:18.196][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:18.196][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:18.201][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:18.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:18.203][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:18.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:18.205][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.208][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.211][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:18.211][private$selectFields]
biodb.TRACE[2025-03-15 16:04:18.212][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:18.213][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:18.214][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:18.215][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.216][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.217][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.218][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.219][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.220][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.221][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:18.222][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:18.223][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.224][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.226][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.227][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:18.228][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.237][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.240][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.244][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-03-15 16:04:18.245][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:18.245][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:18.246][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:18.251][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:18.251][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:18.252][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:18.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:18.254][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.257][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.260][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:18.261][private$selectFields]
biodb.TRACE[2025-03-15 16:04:18.262][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:18.262][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:18.263][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:18.264][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.265][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.266][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.267][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.268][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.269][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.270][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:18.271][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:18.272][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.273][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.274][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.275][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:18.276][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.282][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.286][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-03-15 16:04:18.287][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:18.287][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:18.288][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:18.293][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:18.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:18.294][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:18.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:18.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.299][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.302][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:18.303][private$selectFields]
biodb.TRACE[2025-03-15 16:04:18.304][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:18.305][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:18.306][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:18.306][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.307][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.309][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.309][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.310][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.312][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.313][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:18.313][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:18.314][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.315][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.316][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.317][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:18.318][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.321][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.325][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.328][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-03-15 16:04:18.329][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:04:18.330][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:04:18.332][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:18.332][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:18.333][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:18.338][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:18.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:18.339][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:18.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:18.343][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:04:18.345][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:04:18.346][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2025-03-15 16:04:18.347][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:04:18.348][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2025-03-15 16:04:18.350][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:18.351][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:18.352][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:18.357][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:18.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:18.358][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:18.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:18.360][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.363][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.366][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:18.369][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:18.370][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:18.371][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:18.375][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:18.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:18.377][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:18.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:18.379][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.382][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.385][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:18.389][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:18.390][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:18.390][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:18.395][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:18.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:18.397][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:18.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:18.398][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.402][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.405][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:18.408][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:18.409][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:18.410][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:18.414][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:18.415][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:18.416][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:18.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:18.418][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.421][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.424][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:18.428][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:18.428][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:18.429][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:18.434][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:18.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:18.436][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:18.437][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:18.438][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.441][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.445][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:18.448][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:18.449][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:18.449][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:18.454][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:18.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:18.456][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:18.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:18.458][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.461][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.464][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:18.467][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:18.468][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:18.469][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:18.474][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:18.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:18.475][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:18.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:18.477][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.480][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.483][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:18.487][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:18.487][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:18.488][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:18.493][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:18.493][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:18.494][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:18.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:18.496][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.499][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.502][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:18.506][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:04:18.508][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:04:18.510][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2025-03-15 16:04:18.511][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:04:18.512][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2025-03-15 16:04:18.514][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:18.515][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:18.516][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:18.521][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:18.522][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:18.522][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:18.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:18.524][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.527][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.536][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:18.540][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:18.540][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:18.541][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:18.546][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:18.547][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:18.548][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:18.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:18.549][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.552][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.555][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:18.558][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:18.559][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:18.559][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:18.564][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:18.565][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:18.566][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:18.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:18.568][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.571][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.574][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:18.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:18.577][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:04:18.579][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:18.579][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:18.580][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:18.585][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:18.586][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:18.586][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:18.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:18.588][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.591][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.594][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:18.595][private$selectFields]
biodb.TRACE[2025-03-15 16:04:18.596][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:18.596][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:18.597][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:18.598][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.599][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.600][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.601][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.602][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.603][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.604][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:18.605][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:18.606][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.607][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.608][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.609][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:18.610][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.613][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.616][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.620][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-03-15 16:04:18.620][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:18.621][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:18.622][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:18.627][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:18.628][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:18.628][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:18.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:18.630][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.633][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.636][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:18.637][private$selectFields]
biodb.TRACE[2025-03-15 16:04:18.638][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:18.639][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:18.640][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:18.640][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.641][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.643][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.644][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.644][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.646][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.646][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:18.647][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:18.648][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.649][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.650][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.651][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:18.652][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.656][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.659][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.662][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-03-15 16:04:18.663][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:18.664][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:18.665][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:18.670][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:18.670][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:18.671][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:18.672][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:18.673][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.676][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.679][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:18.680][private$selectFields]
biodb.TRACE[2025-03-15 16:04:18.681][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:18.682][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:18.682][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:18.683][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.684][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.686][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.686][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.687][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.689][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.690][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:18.691][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:18.691][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.692][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.694][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.695][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:18.696][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.699][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.702][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:18.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:18.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:18.706][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-03-15 16:04:18.706][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:04:18.707][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:04:18.727][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:18.728][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:18.729][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:18.733][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:18.734][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:18.735][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:18.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:18.738][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:04:18.741][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:04:18.741][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:04:18.743][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-03-15 16:04:19.110][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-03-15 16:04:19.460][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:04:19.462][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2b6f29bb7a7663ff23fb5e7dcae5c27f.content"
biodb.TRACE[2025-03-15 16:04:19.466][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2b6f29bb7a7663ff23fb5e7dcae5c27f.request"
biodb.DEBUG[2025-03-15 16:04:19.468][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:19.469][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:19.470][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:19.475][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:19.476][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:19.476][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:19.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:19.478][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:19.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:19.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:19.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:19.481][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:19.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:19.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:19.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:19.484][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:19.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:19.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:19.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:19.488][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:19.488][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:19.489][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:19.494][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:19.495][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:19.495][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:19.496][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:19.497][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:19.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:19.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:19.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:19.500][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:19.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:19.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:19.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:19.503][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:19.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:19.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:19.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:19.507][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:19.507][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:19.508][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:19.513][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:19.514][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:19.514][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:19.515][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:19.516][private$loadEntries] Creating entries from ids [1]: "28243".
biodb.DEBUG[2025-03-15 16:04:19.517][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:04:19.518][cch$loadFileContent] Trying to load 1 files from cache: [1]: "28243".
biodb.TRACE[2025-03-15 16:04:19.520][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:04:19.521][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:04:19.521][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:04:19.522][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:04:19.523][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:04:19.524][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:04:19.526][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:19.526][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:19.527][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:19.532][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:19.533][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:19.534][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:19.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:19.535][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=28243".
biodb.DEBUG[2025-03-15 16:04:19.538][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:04:19.538][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:04:19.540][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=28243".
biodb.TRACE[2025-03-15 16:04:19.907][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=28243).
biodb.DEBUG[2025-03-15 16:04:20.289][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:04:20.291][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/177c3a227615d232b537605885883911.content"
biodb.TRACE[2025-03-15 16:04:20.294][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/177c3a227615d232b537605885883911.request"
biodb.TRACE[2025-03-15 16:04:20.296][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/28243.xml"
biodb.DEBUG[2025-03-15 16:04:20.298][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:04:20.298][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:04:20.299][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:04:20.301][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:20.301][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:20.302][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:20.307][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:20.307][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:20.308][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:20.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:20.310][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:20.311][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:20.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:20.313][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:20.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:20.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:20.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:20.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:20.316][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:20.317][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:20.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:20.319][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:20.320][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:20.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:20.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:20.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:20.323][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:20.323][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:20.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:20.325][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:20.326][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:20.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:20.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:20.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:20.328][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:20.329][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:20.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:20.331][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:20.331][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:20.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:20.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:20.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:20.334][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:20.335][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:20.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:20.336][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:20.337][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:20.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:20.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:20.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:20.340][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:20.341][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:20.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:20.342][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:20.343][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:20.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:20.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:20.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:20.346][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:20.347][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:20.348][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:20.348][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:20.349][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:20.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:20.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:20.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:20.352][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:20.353][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:20.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:20.354][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:20.355][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:20.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:20.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:20.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:20.358][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:20.359][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:20.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:20.360][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:20.361][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:20.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:20.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:20.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:20.364][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:20.365][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:20.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:20.367][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:20.368][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:20.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:20.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:20.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:20.370][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:20.371][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:20.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:20.373][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:20.374][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:20.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:20.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:20.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:20.377][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:20.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:20.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:20.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:20.379][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:20.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:20.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:20.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:20.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:20.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:20.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:20.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:20.385][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:20.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:20.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:20.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:20.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:20.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:20.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:20.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:20.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:20.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:20.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:20.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:20.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:20.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:20.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:20.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:20.397][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:20.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:20.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:20.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:20.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:20.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:20.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:20.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:20.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:20.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:20.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:20.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:20.407][self$createEntryFromContent] Accession numbers: 28243.
biodb.TRACE[2025-03-15 16:04:20.408][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:20.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:20.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:20.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:20.411][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:20.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:20.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:20.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:20.414][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:20.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:20.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:20.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:20.416][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:20.417][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:20.418][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:20.422][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:20.423][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:20.424][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:20.424][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:20.425][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:20.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:20.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:20.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:20.428][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:20.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:20.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:20.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:20.431][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:20.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:20.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:20.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:20.434][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:20.435][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:20.436][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:20.440][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:20.441][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:20.442][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:20.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:20.443][private$loadEntries] Creating entries from ids [1]: "70786".
biodb.DEBUG[2025-03-15 16:04:20.444][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:04:20.445][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70786".
biodb.TRACE[2025-03-15 16:04:20.446][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:04:20.447][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:04:20.448][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:04:20.449][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:04:20.449][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:04:20.450][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:04:20.452][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:20.453][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:20.454][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:20.458][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:20.459][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:20.460][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:20.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:20.462][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70786".
biodb.DEBUG[2025-03-15 16:04:20.464][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:04:20.464][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:04:20.466][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70786".
biodb.TRACE[2025-03-15 16:04:20.872][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70786).
biodb.DEBUG[2025-03-15 16:04:21.236][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:04:21.238][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ea24f2a708fc4a90f6eff28b49d993c4.content"
biodb.TRACE[2025-03-15 16:04:21.241][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ea24f2a708fc4a90f6eff28b49d993c4.request"
biodb.TRACE[2025-03-15 16:04:21.244][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70786.xml"
biodb.DEBUG[2025-03-15 16:04:21.245][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:04:21.246][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:04:21.247][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:04:21.249][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:21.249][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:21.250][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:21.255][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:21.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:21.257][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:21.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:21.259][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:21.260][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:21.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:21.262][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:21.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:21.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:21.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:21.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:21.266][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:21.266][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:21.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:21.268][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:21.269][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:21.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:21.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:21.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:21.273][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:21.273][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:21.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:21.275][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:21.276][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:21.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:21.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:21.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:21.280][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:21.280][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:21.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:21.282][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:21.283][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:21.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:21.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:21.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:21.286][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:21.287][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:21.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:21.288][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:21.289][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:21.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:21.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:21.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:21.292][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:21.293][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:21.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:21.295][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:21.296][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:21.297][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:21.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:21.298][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:21.299][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:21.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:21.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:21.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:21.303][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:21.304][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:21.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:21.305][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:21.306][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:21.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:21.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:21.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:21.309][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:21.310][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:21.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:21.311][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:21.313][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:21.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:21.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:21.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:21.316][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:21.317][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:21.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:21.319][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:21.320][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:21.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:21.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:21.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:21.323][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:21.324][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:21.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:21.325][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:21.327][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:21.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:21.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:21.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:21.341][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:21.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:21.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:21.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:21.344][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:21.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:21.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:21.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:21.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:21.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:21.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:21.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:21.350][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:21.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:21.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:21.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:21.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:21.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:21.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:21.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:21.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:21.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:21.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:21.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:21.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:21.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:21.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:21.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:21.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:21.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:21.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:21.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:21.367][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:21.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:21.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:21.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:21.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:21.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:21.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:21.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:21.373][self$createEntryFromContent] Accession numbers: 70786.
biodb.TRACE[2025-03-15 16:04:21.374][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:21.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:21.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:21.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:21.377][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:21.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:21.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:21.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:21.380][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:21.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:21.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:21.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:21.383][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:21.384][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:21.384][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:21.389][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:21.390][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:21.391][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:21.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:21.393][private$loadEntries] Creating entries from ids [1]: "78144".
biodb.DEBUG[2025-03-15 16:04:21.393][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:04:21.395][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78144".
biodb.TRACE[2025-03-15 16:04:21.395][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:04:21.396][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:04:21.397][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:04:21.398][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:04:21.399][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:04:21.399][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:04:21.401][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:21.402][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:21.403][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:21.408][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:21.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:21.409][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:21.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:21.411][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78144".
biodb.DEBUG[2025-03-15 16:04:21.413][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:04:21.413][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:04:21.414][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78144".
biodb.TRACE[2025-03-15 16:04:21.765][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78144).
biodb.DEBUG[2025-03-15 16:04:22.133][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:04:22.134][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ede5a640bd42c7611e16282ef185b74.content"
biodb.TRACE[2025-03-15 16:04:22.137][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ede5a640bd42c7611e16282ef185b74.request"
biodb.TRACE[2025-03-15 16:04:22.139][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78144.xml"
biodb.DEBUG[2025-03-15 16:04:22.141][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:04:22.142][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:04:22.143][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:04:22.145][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:22.146][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:22.146][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:22.152][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:22.152][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:22.153][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:22.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:22.156][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:22.157][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:22.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:22.159][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:22.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:22.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:22.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:22.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:22.163][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:22.164][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:22.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:22.166][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:22.167][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:22.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:22.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:22.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:22.170][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:22.171][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:22.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:22.173][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:22.174][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:22.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:22.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:22.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:22.178][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:22.179][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:22.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:22.180][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:22.181][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:22.182][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:22.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:22.183][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:22.184][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:22.185][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:22.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:22.187][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:22.188][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:22.188][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:22.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:22.190][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:22.191][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:22.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:22.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:22.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:22.194][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:22.195][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:22.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:22.197][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:22.198][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:22.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:22.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:22.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:22.201][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:22.202][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:22.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:22.203][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:22.204][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:22.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:22.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:22.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:22.207][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:22.208][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:22.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:22.210][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:22.211][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:22.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:22.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:22.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:22.214][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:22.215][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:22.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:22.216][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:22.217][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:22.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:22.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:22.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:22.221][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:22.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:22.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:22.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:22.224][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:22.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:22.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:22.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:22.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:22.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:22.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:22.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:22.230][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:22.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:22.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:22.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:22.234][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:22.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:22.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:22.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:22.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:22.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:22.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:22.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:22.240][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:22.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:22.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:22.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:22.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:22.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:22.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:22.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:22.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:22.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:22.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:22.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:22.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:22.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:22.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:22.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:22.254][self$createEntryFromContent] Accession numbers: 78144.
biodb.TRACE[2025-03-15 16:04:22.255][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:22.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:22.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:22.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:22.258][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:22.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:22.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:22.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:22.261][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:22.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:22.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:22.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:22.265][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:04:22.266][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:22.267][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:22.268][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:22.272][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:22.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:22.274][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:22.275][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:22.276][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:22.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:22.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:22.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:22.280][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:22.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:22.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:22.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:22.283][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:22.284][private$selectFields]
biodb.TRACE[2025-03-15 16:04:22.284][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:22.285][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:22.286][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:22.287][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:22.288][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:22.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:22.289][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:22.290][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:22.291][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:22.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:22.293][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:22.293][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:22.294][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:22.295][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:22.296][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:22.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:22.298][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:22.298][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:22.299][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:22.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:22.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:22.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:22.303][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:22.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:22.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:22.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:22.306][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:22.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:22.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:22.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:22.309][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-03-15 16:04:22.310][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:22.311][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:22.312][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:22.316][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:22.317][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:22.318][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:22.319][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:22.320][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:22.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:22.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:22.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:22.323][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:22.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:22.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:22.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:22.326][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:22.327][private$selectFields]
biodb.TRACE[2025-03-15 16:04:22.328][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:22.329][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:22.330][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:22.331][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:22.332][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:22.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:22.333][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:22.334][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:22.335][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:22.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:22.336][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:22.337][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:22.338][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:22.339][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:22.345][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:22.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:22.350][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:22.351][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:22.352][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:22.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:22.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:22.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:22.355][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:22.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:22.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:22.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:22.359][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:22.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:22.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:22.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:22.362][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [28243].
biodb.DEBUG[2025-03-15 16:04:22.363][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:22.364][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:22.365][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:22.370][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:22.371][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:22.372][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:22.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:22.373][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:22.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:22.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:22.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:22.377][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:22.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:22.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:22.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:22.381][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:22.381][private$selectFields]
biodb.TRACE[2025-03-15 16:04:22.382][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:22.383][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:22.384][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:22.384][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:22.385][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:22.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:22.387][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:22.388][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:22.389][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:22.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:22.390][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:22.391][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:22.392][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:22.393][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:22.393][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:22.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:22.395][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:22.396][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:22.397][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:22.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:22.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:22.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:22.400][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:22.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:22.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:22.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:22.403][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:22.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:22.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:22.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:22.407][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [78144].
biodb.DEBUG[2025-03-15 16:04:22.408][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:04:22.408][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:04:22.410][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:22.411][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:22.412][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:22.416][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:22.417][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:22.418][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:22.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:22.421][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:04:22.424][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:04:22.425][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:04:22.426][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-03-15 16:04:22.789][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-03-15 16:04:23.317][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:04:23.319][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9a13652ab89a613a3b0e10d3b6cb10a0.content"
biodb.TRACE[2025-03-15 16:04:23.322][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9a13652ab89a613a3b0e10d3b6cb10a0.request"
biodb.DEBUG[2025-03-15 16:04:23.326][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:23.327][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:23.328][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:23.332][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:23.333][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:23.334][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:23.334][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:23.335][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:23.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:23.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:23.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:23.338][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:23.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:23.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:23.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:23.342][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:23.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:23.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:23.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:23.345][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:23.345][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:23.346][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:23.351][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:23.351][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:23.352][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:23.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:23.354][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:23.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:23.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:23.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:23.357][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:23.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:23.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:23.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:23.360][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:23.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:23.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:23.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:23.363][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:23.364][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:23.364][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:23.369][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:23.370][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:23.371][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:23.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:23.372][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:23.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:23.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:23.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:23.376][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:23.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:23.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:23.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:23.379][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:23.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:23.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:23.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:23.382][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:04:23.383][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:23.384][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:23.385][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:23.390][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:23.390][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:23.391][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:23.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:23.393][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:23.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:23.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:23.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:23.396][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:23.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:23.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:23.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:23.399][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:23.400][private$selectFields]
biodb.TRACE[2025-03-15 16:04:23.401][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:23.401][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:23.402][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:23.403][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:23.404][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:23.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:23.405][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:23.406][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:23.406][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:23.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:23.408][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:23.409][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:23.409][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:23.410][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:23.411][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:23.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:23.412][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:23.413][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:23.414][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:23.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:23.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:23.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:23.417][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:23.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:23.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:23.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:23.420][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:23.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:23.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:23.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:23.424][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-03-15 16:04:23.424][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:23.425][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:23.426][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:23.431][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:23.431][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:23.432][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:23.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:23.434][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:23.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:23.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:23.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:23.437][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:23.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:23.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:23.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:23.441][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:23.441][private$selectFields]
biodb.TRACE[2025-03-15 16:04:23.442][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:23.443][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:23.444][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:23.445][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:23.445][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:23.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:23.447][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:23.447][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:23.448][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:23.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:23.450][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:23.451][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:23.452][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:23.452][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:23.453][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:23.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:23.454][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:23.455][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:23.456][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:23.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:23.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:23.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:23.459][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:23.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:23.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:23.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:23.463][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:23.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:23.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:23.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:23.466][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-03-15 16:04:23.467][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:23.467][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:23.468][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:23.473][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:23.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:23.474][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:23.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:23.476][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:23.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:23.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:23.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:23.479][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:23.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:23.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:23.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:23.482][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:23.482][private$selectFields]
biodb.TRACE[2025-03-15 16:04:23.483][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:23.484][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:23.485][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:23.485][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:23.487][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:23.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:23.488][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:23.489][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:23.490][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:23.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:23.491][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:23.492][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:23.493][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:23.494][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:23.495][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:23.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:23.496][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:23.497][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:23.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:23.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:23.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:23.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:23.501][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:23.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:23.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:23.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:23.504][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:23.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:23.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:23.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:23.508][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-03-15 16:04:23.509][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:04:23.509][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:04:23.511][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:23.512][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:23.512][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:23.517][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:23.518][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:23.519][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:23.528][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:23.530][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:04:23.533][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:04:23.534][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:04:23.536][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-03-15 16:04:23.894][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-03-15 16:04:24.266][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:04:24.267][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a985300ab8a01d49254fbf993ad91279.content"
biodb.TRACE[2025-03-15 16:04:24.271][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a985300ab8a01d49254fbf993ad91279.request"
biodb.DEBUG[2025-03-15 16:04:24.273][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:24.274][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:24.274][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:24.279][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:24.280][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:24.280][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:24.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:24.282][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:24.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:24.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:24.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:24.285][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:24.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:24.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:24.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:24.288][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:24.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:24.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:24.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:24.292][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:24.292][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:24.293][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:24.298][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:24.298][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:24.299][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:24.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:24.301][private$loadEntries] Creating entries from ids [1]: "47739".
biodb.DEBUG[2025-03-15 16:04:24.302][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:04:24.303][cch$loadFileContent] Trying to load 1 files from cache: [1]: "47739".
biodb.TRACE[2025-03-15 16:04:24.304][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:04:24.305][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:04:24.306][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:04:24.306][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:04:24.307][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:04:24.308][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:04:24.310][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:24.310][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:24.311][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:24.316][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:24.316][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:24.317][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:24.318][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:24.319][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=47739".
biodb.DEBUG[2025-03-15 16:04:24.321][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:04:24.322][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:04:24.323][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=47739".
biodb.TRACE[2025-03-15 16:04:24.678][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=47739).
biodb.DEBUG[2025-03-15 16:04:25.037][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:04:25.039][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0dc9c92acc9df5971b3177a6daad90f3.content"
biodb.TRACE[2025-03-15 16:04:25.043][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0dc9c92acc9df5971b3177a6daad90f3.request"
biodb.TRACE[2025-03-15 16:04:25.046][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/47739.xml"
biodb.DEBUG[2025-03-15 16:04:25.047][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:04:25.048][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:04:25.049][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:04:25.051][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:25.052][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:25.053][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:25.057][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:25.058][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:25.059][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:25.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:25.062][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:25.063][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:25.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:25.064][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:25.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:25.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:25.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:25.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:25.069][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:25.070][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:25.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:25.071][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:25.072][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:25.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:25.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:25.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:25.076][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:25.076][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:25.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:25.078][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:25.079][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:25.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:25.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:25.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:25.083][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:25.083][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:25.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:25.085][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:25.086][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:25.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:25.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:25.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:25.089][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:25.090][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:25.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:25.092][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:25.093][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:25.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:25.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:25.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:25.096][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:25.097][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:25.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:25.099][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:25.100][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:25.101][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:25.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:25.102][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:25.103][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:25.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:25.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:25.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:25.106][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:25.107][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:25.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:25.109][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:25.110][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:25.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:25.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:25.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:25.113][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:25.114][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:25.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:25.115][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:25.117][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:25.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:25.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:25.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:25.120][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:25.121][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:25.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:25.122][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:25.123][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:25.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:25.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:25.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:25.127][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:25.127][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:25.128][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:25.129][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:25.130][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:25.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:25.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:25.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:25.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:25.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:25.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:25.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:25.137][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:25.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:25.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:25.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:25.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:25.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:25.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:25.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:25.143][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:25.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:25.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:25.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:25.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:25.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:25.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:25.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:25.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:25.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:25.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:25.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:25.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:25.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:25.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:25.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:25.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:25.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:25.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:25.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:25.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:25.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:25.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:25.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:25.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:25.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:25.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:25.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:25.166][self$createEntryFromContent] Accession numbers: 47739.
biodb.TRACE[2025-03-15 16:04:25.167][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:25.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:25.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:25.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:25.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:25.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:25.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:25.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:25.173][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:25.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:25.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:25.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:25.176][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:25.177][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:25.178][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:25.183][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:25.184][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:25.184][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:25.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:25.186][private$loadEntries] Creating entries from ids [1]: "51744".
biodb.DEBUG[2025-03-15 16:04:25.187][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:04:25.189][cch$loadFileContent] Trying to load 1 files from cache: [1]: "51744".
biodb.TRACE[2025-03-15 16:04:25.190][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:04:25.191][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:04:25.192][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:04:25.193][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:04:25.194][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:04:25.194][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:04:25.197][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:25.198][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:25.198][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:25.214][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:25.215][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:25.216][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:25.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:25.217][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51744".
biodb.DEBUG[2025-03-15 16:04:25.220][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:04:25.221][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:04:25.222][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51744".
biodb.TRACE[2025-03-15 16:04:25.588][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51744).
biodb.DEBUG[2025-03-15 16:04:25.939][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:04:25.941][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/34d89a621633962f5a6b9b09f1ef84ed.content"
biodb.TRACE[2025-03-15 16:04:25.945][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/34d89a621633962f5a6b9b09f1ef84ed.request"
biodb.TRACE[2025-03-15 16:04:25.947][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51744.xml"
biodb.DEBUG[2025-03-15 16:04:25.949][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:04:25.950][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:04:25.951][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:04:25.952][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:25.953][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:25.954][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:25.959][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:25.960][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:25.961][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:25.961][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:25.963][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:25.964][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:25.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:25.966][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:25.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:25.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:25.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:25.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:25.970][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:25.971][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:25.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:25.973][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:25.974][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:25.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:25.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:25.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:25.977][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:25.978][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:25.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:25.980][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:25.981][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:25.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:25.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:25.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:25.985][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:25.986][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:25.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:25.993][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:26.002][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:26.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:26.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:26.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:26.006][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:26.007][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:26.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:26.009][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:26.010][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:26.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:26.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:26.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:26.013][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:26.014][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:26.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:26.016][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:26.017][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:26.018][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:26.018][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:26.019][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:26.020][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:26.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:26.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:26.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:26.024][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:26.025][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:26.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:26.026][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:26.027][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:26.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:26.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:26.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:26.031][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:26.032][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:26.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:26.033][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:26.034][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:26.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:26.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:26.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:26.038][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:26.039][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:26.040][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:26.040][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:26.042][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:26.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:26.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:26.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:26.045][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:26.045][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:26.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:26.047][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:26.048][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:26.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:26.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:26.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:26.052][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:26.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:26.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:26.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:26.055][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:26.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:26.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:26.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:26.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:26.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:26.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:26.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:26.061][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:26.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:26.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:26.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:26.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:26.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:26.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:26.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:26.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:26.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:26.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:26.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:26.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:26.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:26.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:26.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:26.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:26.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:26.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:26.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:26.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:26.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:26.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:26.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:26.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:26.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:26.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:26.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:26.083][self$createEntryFromContent] Accession numbers: 51744.
biodb.TRACE[2025-03-15 16:04:26.084][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:26.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:26.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:26.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:26.087][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:26.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:26.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:26.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:26.091][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:26.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:26.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:26.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:26.094][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:26.095][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:26.096][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:26.101][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:26.125][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:26.126][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:26.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:26.127][private$loadEntries] Creating entries from ids [1]: "64473".
biodb.DEBUG[2025-03-15 16:04:26.128][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:04:26.129][cch$loadFileContent] Trying to load 1 files from cache: [1]: "64473".
biodb.TRACE[2025-03-15 16:04:26.131][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:04:26.132][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:04:26.133][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:04:26.133][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:04:26.134][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:04:26.135][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:04:26.137][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:26.138][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:26.139][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:26.144][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:26.145][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:26.145][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:26.146][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:26.147][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64473".
biodb.DEBUG[2025-03-15 16:04:26.150][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:04:26.150][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:04:26.152][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64473".
biodb.TRACE[2025-03-15 16:04:26.528][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64473).
biodb.DEBUG[2025-03-15 16:04:26.892][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:04:26.894][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bc75e6e381d0b772364b3d17c4c0f5e.content"
biodb.TRACE[2025-03-15 16:04:26.897][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bc75e6e381d0b772364b3d17c4c0f5e.request"
biodb.TRACE[2025-03-15 16:04:26.899][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64473.xml"
biodb.DEBUG[2025-03-15 16:04:26.901][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:04:26.902][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:04:26.903][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:04:26.904][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:26.904][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:26.905][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:26.910][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:26.911][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:26.911][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:26.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:26.914][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:26.914][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:26.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:26.916][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:26.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:26.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:26.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:26.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:26.920][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:26.921][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:26.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:26.923][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:26.924][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:26.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:26.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:26.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:26.927][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:26.927][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:26.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:26.929][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:26.930][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:26.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:26.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:26.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:26.933][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:26.934][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:26.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:26.935][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:26.936][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:26.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:26.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:26.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:26.940][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:26.940][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:26.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:26.942][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:26.943][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:26.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:26.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:26.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:26.946][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:26.947][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:26.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:26.948][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:26.949][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:26.950][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:26.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:26.951][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:26.952][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:26.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:26.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:26.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:26.956][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:26.957][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:26.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:26.958][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:26.959][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:26.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:26.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:26.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:26.962][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:26.963][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:26.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:26.965][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:26.966][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:26.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:26.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:26.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:26.969][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:26.969][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:26.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:26.971][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:26.972][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:26.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:26.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:26.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:26.975][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:26.976][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:26.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:26.977][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:26.978][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:26.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:26.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:26.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:26.981][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:26.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:26.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:26.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:26.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:26.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:26.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:26.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:26.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:26.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:26.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:26.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:26.991][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:26.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:26.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:26.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:26.994][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:26.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:26.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:26.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:26.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:26.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:26.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:26.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:27.000][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:27.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:27.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:27.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:27.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:27.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:27.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:27.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:27.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:27.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:27.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:27.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:27.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:27.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:27.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:27.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:27.012][self$createEntryFromContent] Accession numbers: 64473.
biodb.TRACE[2025-03-15 16:04:27.013][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:27.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:27.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:27.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:27.016][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:27.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:27.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:27.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:27.019][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:27.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:27.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:27.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:27.022][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:27.022][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:27.023][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:27.028][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:27.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:27.029][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:27.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:27.031][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:27.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:27.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:27.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:27.034][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:27.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:27.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:27.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:27.037][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:27.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:27.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:27.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:27.049][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:27.050][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:27.050][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:27.055][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:27.056][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:27.056][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:27.057][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:27.058][private$loadEntries] Creating entries from ids [1]: "75244".
biodb.DEBUG[2025-03-15 16:04:27.059][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:04:27.060][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75244".
biodb.TRACE[2025-03-15 16:04:27.061][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:04:27.062][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:04:27.063][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:04:27.064][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:04:27.065][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:04:27.065][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:04:27.068][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:27.068][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:27.069][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:27.073][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:27.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:27.075][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:27.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:27.076][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75244".
biodb.DEBUG[2025-03-15 16:04:27.079][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:04:27.079][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:04:27.080][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75244".
biodb.TRACE[2025-03-15 16:04:27.609][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75244).
biodb.DEBUG[2025-03-15 16:04:27.983][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:04:27.989][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cae81bf9939177869251c540dee6df85.content"
biodb.TRACE[2025-03-15 16:04:27.992][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cae81bf9939177869251c540dee6df85.request"
biodb.TRACE[2025-03-15 16:04:27.996][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75244.xml"
biodb.DEBUG[2025-03-15 16:04:27.998][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:04:27.999][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:04:28.001][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:04:28.005][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:28.006][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:28.007][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:28.012][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:28.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:28.013][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:28.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:28.016][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:28.017][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:28.018][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:28.019][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:28.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:28.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:28.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:28.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:28.024][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:28.024][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:28.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:28.026][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:28.027][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:28.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:28.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:28.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:28.030][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:28.031][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:28.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:28.032][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:28.033][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:28.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:28.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:28.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:28.037][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:28.038][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:28.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:28.039][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:28.040][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:28.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:28.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:28.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:28.043][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:28.044][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:28.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:28.046][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:28.047][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:28.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:28.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:28.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:28.050][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:28.051][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:28.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:28.052][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:28.053][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:28.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:28.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:28.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:28.057][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:28.058][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:28.058][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:28.059][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:28.060][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:28.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:28.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:28.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:28.063][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:28.064][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:28.065][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:28.066][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:28.067][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:28.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:28.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:28.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:28.070][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:28.071][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:28.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:28.073][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:28.074][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:28.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:28.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:28.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:28.077][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:28.078][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:28.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:28.080][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:28.081][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:28.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:28.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:28.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:28.084][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:28.085][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:28.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:28.087][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:28.088][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:28.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:28.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:28.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:28.091][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:28.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:28.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:28.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:28.095][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:28.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:28.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:28.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:28.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:28.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:28.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:28.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:28.101][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:28.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:28.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:28.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:28.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:28.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:28.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:28.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:28.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:28.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:28.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:28.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:28.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:28.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:28.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:28.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:28.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:28.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:28.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:28.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:28.118][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:28.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:28.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:28.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:28.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:28.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:28.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:28.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:28.124][self$createEntryFromContent] Accession numbers: 75244.
biodb.TRACE[2025-03-15 16:04:28.125][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:28.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:28.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:28.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:28.128][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:28.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:28.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:28.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:28.132][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:28.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:28.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:28.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:28.135][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:28.136][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:28.136][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:28.141][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:28.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:28.143][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:28.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:28.145][private$loadEntries] Creating entries from ids [1]: "75311".
biodb.DEBUG[2025-03-15 16:04:28.146][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:04:28.147][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75311".
biodb.TRACE[2025-03-15 16:04:28.148][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:04:28.149][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:04:28.150][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:04:28.151][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:04:28.152][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:04:28.153][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:04:28.155][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:28.156][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:28.157][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:28.162][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:28.163][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:28.163][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:28.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:28.165][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75311".
biodb.DEBUG[2025-03-15 16:04:28.167][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:04:28.168][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:04:28.169][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75311".
biodb.TRACE[2025-03-15 16:04:28.539][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75311).
biodb.DEBUG[2025-03-15 16:04:28.907][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:04:28.909][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4e5c0f0d646c796bdaff17cc90a3658d.content"
biodb.TRACE[2025-03-15 16:04:28.912][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4e5c0f0d646c796bdaff17cc90a3658d.request"
biodb.TRACE[2025-03-15 16:04:28.915][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75311.xml"
biodb.DEBUG[2025-03-15 16:04:28.916][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:04:28.917][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:04:28.918][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:04:28.920][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:28.920][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:28.921][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:28.926][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:28.927][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:28.928][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:28.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:28.930][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:28.931][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:28.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:28.933][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:28.934][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:28.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:28.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:28.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:28.937][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:28.938][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:28.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:28.939][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:28.941][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:28.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:28.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:28.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:28.944][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:28.944][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:28.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:28.946][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:28.947][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:28.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:28.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:28.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:28.951][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:28.952][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:28.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:28.953][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:28.954][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:28.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:28.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:28.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:28.957][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:28.959][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:28.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:28.960][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:28.961][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:28.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:28.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:28.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:28.964][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:28.965][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:28.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:28.967][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:28.968][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:28.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:28.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:28.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:28.971][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:28.972][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:28.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:28.974][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:28.975][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:28.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:28.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:28.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:28.978][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:28.979][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:28.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:28.981][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:28.982][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:28.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:28.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:28.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:29.002][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:29.003][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:29.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:29.005][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:29.006][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:29.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:29.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:29.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:29.010][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:29.011][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:29.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:29.012][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:29.013][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:29.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:29.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:29.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:29.016][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:29.017][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:29.018][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:29.019][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:29.020][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:29.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:29.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:29.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:29.023][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:29.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:29.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:29.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:29.027][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:29.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:29.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:29.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:29.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:29.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:29.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:29.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:29.032][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:29.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:29.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:29.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:29.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:29.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:29.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:29.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:29.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:29.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:29.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:29.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:29.042][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:29.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:29.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:29.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:29.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:29.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:29.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:29.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:29.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:29.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:29.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:29.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:29.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:29.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:29.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:29.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:29.055][self$createEntryFromContent] Accession numbers: 75311.
biodb.TRACE[2025-03-15 16:04:29.056][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:29.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:29.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:29.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:29.060][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:29.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:29.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:29.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:29.063][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:29.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:29.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:29.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:29.066][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:29.067][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:29.068][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:29.073][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:29.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:29.074][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:29.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:29.076][private$loadEntries] Creating entries from ids [1]: "75350".
biodb.DEBUG[2025-03-15 16:04:29.077][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:04:29.078][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75350".
biodb.TRACE[2025-03-15 16:04:29.079][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:04:29.080][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:04:29.081][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:04:29.082][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:04:29.083][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:04:29.083][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:04:29.086][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:29.086][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:29.087][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:29.092][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:29.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:29.094][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:29.094][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:29.095][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75350".
biodb.DEBUG[2025-03-15 16:04:29.098][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:04:29.099][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:04:29.100][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75350".
biodb.TRACE[2025-03-15 16:04:29.481][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75350).
biodb.DEBUG[2025-03-15 16:04:29.858][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:04:29.860][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37625fe42e340de84bdcc226ef73c285.content"
biodb.TRACE[2025-03-15 16:04:29.863][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37625fe42e340de84bdcc226ef73c285.request"
biodb.TRACE[2025-03-15 16:04:29.865][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75350.xml"
biodb.DEBUG[2025-03-15 16:04:29.867][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:04:29.868][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:04:29.869][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:04:29.870][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:29.871][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:29.871][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:29.876][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:29.876][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:29.877][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:29.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:29.879][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:29.880][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:29.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:29.882][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:29.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:29.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:29.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:29.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:29.886][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:29.886][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:29.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:29.888][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:29.889][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:29.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:29.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:29.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:29.892][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:29.892][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:29.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:29.894][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:29.895][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:29.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:29.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:29.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:29.898][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:29.898][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:29.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:29.900][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:29.901][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:29.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:29.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:29.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:29.904][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:29.904][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:29.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:29.906][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:29.907][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:29.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:29.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:29.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:29.910][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:29.910][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:29.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:29.912][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:29.913][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:29.913][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:29.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:29.915][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:29.916][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:29.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:29.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:29.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:29.919][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:29.919][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:29.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:29.921][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:29.922][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:29.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:29.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:29.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:29.925][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:29.925][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:29.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:29.927][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:29.928][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:29.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:29.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:29.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:29.931][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:29.932][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:29.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:29.933][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:29.934][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:29.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:29.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:29.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:29.937][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:29.938][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:29.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:29.939][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:29.940][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:29.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:29.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:29.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:29.943][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:29.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:29.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:29.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:29.946][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:29.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:29.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:29.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:29.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:29.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:29.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:29.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:29.952][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:29.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:29.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:29.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:29.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:29.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:29.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:29.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:29.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:29.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:29.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:29.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:29.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:29.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:29.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:29.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:29.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:29.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:29.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:29.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:29.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:29.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:29.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:29.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:29.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:29.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:29.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:29.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:29.973][self$createEntryFromContent] Accession numbers: 75350.
biodb.TRACE[2025-03-15 16:04:29.974][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:29.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:29.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:29.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:29.977][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:29.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:29.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:29.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:29.980][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:29.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:29.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:29.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:29.982][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:29.983][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:29.984][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:29.989][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:29.989][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:29.990][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:29.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:29.991][private$loadEntries] Creating entries from ids [1]: "87236".
biodb.DEBUG[2025-03-15 16:04:29.992][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:04:29.993][cch$loadFileContent] Trying to load 1 files from cache: [1]: "87236".
biodb.TRACE[2025-03-15 16:04:29.994][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:04:29.995][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:04:29.996][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:04:29.997][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:04:29.997][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:04:29.998][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:04:30.001][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:30.001][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:30.002][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:30.008][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:30.009][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:30.010][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:30.010][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:30.011][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=87236".
biodb.DEBUG[2025-03-15 16:04:30.014][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:04:30.015][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:04:30.016][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=87236".
biodb.TRACE[2025-03-15 16:04:30.378][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=87236).
biodb.DEBUG[2025-03-15 16:04:30.744][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:04:30.746][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/668dc6e1fe28fb2b9645ffb56917cb44.content"
biodb.TRACE[2025-03-15 16:04:30.749][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/668dc6e1fe28fb2b9645ffb56917cb44.request"
biodb.TRACE[2025-03-15 16:04:30.752][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/87236.xml"
biodb.DEBUG[2025-03-15 16:04:30.753][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:04:30.755][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:04:30.756][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:04:30.757][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:30.757][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:30.758][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:30.774][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:30.775][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:30.776][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:30.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:30.779][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:30.780][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:30.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:30.781][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:30.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:30.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:30.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:30.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:30.785][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:30.786][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:30.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:30.788][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:30.789][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:30.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:30.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:30.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:30.792][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:30.793][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:30.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:30.795][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:30.796][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:30.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:30.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:30.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:30.799][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:30.800][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:30.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:30.801][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:30.802][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:30.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:30.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:30.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:30.805][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:30.806][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:30.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:30.808][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:30.809][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:30.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:30.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:30.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:30.812][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:30.812][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:30.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:30.814][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:30.815][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:30.816][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:30.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:30.817][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:30.819][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:30.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:30.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:30.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:30.822][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:30.823][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:30.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:30.824][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:30.825][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:30.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:30.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:30.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:30.828][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:30.829][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:30.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:30.830][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:30.832][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:30.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:30.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:30.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:30.835][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:30.836][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:30.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:30.837][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:30.838][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:30.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:30.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:30.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:30.841][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:30.842][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:30.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:30.843][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:30.844][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:30.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:30.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:30.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:30.847][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:30.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:30.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:30.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:30.850][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:30.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:30.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:30.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:30.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:30.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:30.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:30.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:30.856][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:30.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:30.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:30.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:30.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:30.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:30.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:30.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:30.862][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:30.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:30.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:30.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:30.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:30.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:30.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:30.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:30.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:30.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:30.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:30.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:30.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:30.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:30.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:30.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:30.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:30.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:30.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:30.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:30.878][self$createEntryFromContent] Accession numbers: 87236.
biodb.TRACE[2025-03-15 16:04:30.879][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:30.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:30.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:30.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:30.882][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:30.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:30.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:30.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:30.885][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:30.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:30.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:30.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:30.888][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:30.889][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:30.890][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:30.895][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:30.896][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:30.896][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:30.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:30.898][private$loadEntries] Creating entries from ids [1]: "132193".
biodb.DEBUG[2025-03-15 16:04:30.898][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:04:30.900][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132193".
biodb.TRACE[2025-03-15 16:04:30.901][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:04:30.902][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:04:30.903][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:04:30.903][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:04:30.904][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:04:30.905][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:04:30.907][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:30.908][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:30.908][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:30.913][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:30.914][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:30.915][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:30.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:30.916][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132193".
biodb.DEBUG[2025-03-15 16:04:30.919][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:04:30.919][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:04:30.920][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132193".
biodb.TRACE[2025-03-15 16:04:31.282][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132193).
biodb.DEBUG[2025-03-15 16:04:31.643][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:04:31.644][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/485d54e768e8b3a26016a2841d39a83c.content"
biodb.TRACE[2025-03-15 16:04:31.647][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/485d54e768e8b3a26016a2841d39a83c.request"
biodb.TRACE[2025-03-15 16:04:31.650][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132193.xml"
biodb.DEBUG[2025-03-15 16:04:31.651][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:04:31.652][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:04:31.653][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:04:31.655][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:31.655][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:31.656][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:31.661][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:31.662][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:31.662][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:31.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:31.665][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:31.666][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:31.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:31.668][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:31.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:31.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:31.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:31.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:31.672][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:31.673][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:31.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:31.675][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:31.676][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:31.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:31.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:31.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:31.679][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:31.680][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:31.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:31.682][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:31.683][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:31.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:31.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:31.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:31.686][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:31.687][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:31.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:31.688][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:31.689][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:31.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:31.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:31.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:31.693][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:31.694][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:31.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:31.695][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:31.696][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:31.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:31.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:31.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:31.700][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:31.701][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:31.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:31.702][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:31.704][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:31.704][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:31.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:31.706][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:31.707][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:31.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:31.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:31.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:31.710][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:31.711][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:31.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:31.712][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:31.714][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:31.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:31.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:31.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:31.717][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:31.718][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:31.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:31.719][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:31.720][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:31.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:31.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:31.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:31.724][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:31.725][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:31.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:31.726][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:31.727][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:31.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:31.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:31.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:31.730][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:31.731][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:31.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:31.733][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:31.754][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:31.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:31.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:31.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:31.758][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:31.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:31.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:31.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:31.761][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:31.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:31.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:31.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:31.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:31.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:31.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:31.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:31.774][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:31.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:31.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:31.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:31.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:31.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:31.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:31.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:31.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:31.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:31.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:31.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:31.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:31.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:31.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:31.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:31.787][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:31.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:31.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:31.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:31.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:31.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:31.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:31.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:31.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:31.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:31.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:31.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:31.797][self$createEntryFromContent] Accession numbers: 132193.
biodb.TRACE[2025-03-15 16:04:31.798][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:31.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:31.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:31.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:31.810][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:31.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:31.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:31.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:31.814][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:31.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:31.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:31.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:31.817][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:31.818][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:31.819][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:31.824][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:31.825][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:31.826][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:31.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:31.827][private$loadEntries] Creating entries from ids [1]: "146002".
biodb.DEBUG[2025-03-15 16:04:31.828][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:04:31.829][cch$loadFileContent] Trying to load 1 files from cache: [1]: "146002".
biodb.TRACE[2025-03-15 16:04:31.830][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:04:31.831][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:04:31.832][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:04:31.833][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:04:31.834][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:04:31.834][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:04:31.836][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:31.837][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:31.838][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:31.843][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:31.844][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:31.844][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:31.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:31.846][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=146002".
biodb.DEBUG[2025-03-15 16:04:31.848][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:04:31.849][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:04:31.850][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=146002".
biodb.TRACE[2025-03-15 16:04:32.217][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=146002).
biodb.DEBUG[2025-03-15 16:04:32.599][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:04:32.601][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f6f6aad2df3f38cd332b2e82fd62eca2.content"
biodb.TRACE[2025-03-15 16:04:32.604][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f6f6aad2df3f38cd332b2e82fd62eca2.request"
biodb.TRACE[2025-03-15 16:04:32.606][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/146002.xml"
biodb.DEBUG[2025-03-15 16:04:32.608][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:04:32.609][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:04:32.610][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:04:32.612][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:32.612][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:32.613][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:32.618][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:32.619][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:32.620][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:32.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:32.623][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:32.624][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:32.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:32.625][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:32.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:32.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:32.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:32.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:32.630][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:32.630][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:32.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:32.632][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:32.633][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:32.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:32.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:32.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:32.636][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:32.637][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:32.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:32.639][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:32.640][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:32.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:32.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:32.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:32.643][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:32.644][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:32.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:32.646][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:32.647][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:32.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:32.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:32.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:32.651][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:32.651][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:32.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:32.653][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:32.654][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:32.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:32.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:32.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:32.658][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:32.659][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:32.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:32.660][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:32.661][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:32.662][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:32.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:32.664][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:32.665][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:32.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:32.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:32.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:32.668][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:32.669][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:32.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:32.671][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:32.672][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:32.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:32.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:32.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:32.676][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:32.676][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:32.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:32.678][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:32.679][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:32.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:32.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:32.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:32.683][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:32.683][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:32.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:32.685][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:32.686][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:32.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:32.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:32.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:32.689][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:32.690][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:32.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:32.692][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:32.693][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:32.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:32.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:32.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:32.696][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:32.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:32.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:32.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:32.699][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:32.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:32.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:32.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:32.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:32.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:32.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:32.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:32.706][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:32.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:32.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:32.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:32.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:32.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:32.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:32.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:32.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:32.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:32.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:32.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:32.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:32.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:32.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:32.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:32.719][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:32.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:32.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:32.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:32.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:32.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:32.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:32.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:32.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:32.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:32.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:32.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:32.729][self$createEntryFromContent] Accession numbers: 146002.
biodb.TRACE[2025-03-15 16:04:32.730][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:32.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:32.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:32.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:32.734][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:32.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:32.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:32.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:32.737][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:32.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:32.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:32.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:32.741][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:32.742][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:32.742][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:32.747][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:32.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:32.749][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:32.750][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:32.751][private$loadEntries] Creating entries from ids [1]: "65641".
biodb.DEBUG[2025-03-15 16:04:32.751][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:04:32.753][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65641".
biodb.TRACE[2025-03-15 16:04:32.754][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:04:32.755][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:04:32.756][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:04:32.756][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:04:32.757][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:04:32.758][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:04:32.761][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:32.761][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:32.762][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:32.767][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:32.768][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:32.769][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:32.769][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:32.770][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65641".
biodb.DEBUG[2025-03-15 16:04:32.773][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:04:32.773][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:04:32.775][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65641".
biodb.TRACE[2025-03-15 16:04:33.132][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65641).
biodb.DEBUG[2025-03-15 16:04:33.497][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:04:33.499][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cb3af00d6d6a96efc61a93d5105272fc.content"
biodb.TRACE[2025-03-15 16:04:33.502][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cb3af00d6d6a96efc61a93d5105272fc.request"
biodb.TRACE[2025-03-15 16:04:33.504][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65641.xml"
biodb.DEBUG[2025-03-15 16:04:33.505][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:04:33.506][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:04:33.507][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:04:33.508][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:33.509][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:33.509][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:33.514][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:33.515][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:33.516][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:33.516][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:33.518][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:33.519][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:33.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:33.520][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:33.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:33.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:33.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:33.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:33.524][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:33.525][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:33.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:33.527][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:33.528][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:33.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:33.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:33.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:33.531][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:33.532][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:33.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:33.534][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:33.535][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:33.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:33.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:33.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:33.538][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:33.539][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:33.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:33.540][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:33.541][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:33.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:33.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:33.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:33.544][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:33.545][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:33.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:33.546][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:33.548][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:33.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:33.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:33.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:33.551][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:33.551][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:33.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:33.553][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:33.554][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:33.554][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:33.555][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:33.556][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:33.557][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:33.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:33.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:33.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:33.560][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:33.561][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:33.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:33.562][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:33.563][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:33.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:33.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:33.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:33.567][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:33.573][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:33.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:33.579][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:33.581][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:33.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:33.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:33.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:33.584][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:33.585][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:33.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:33.587][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:33.588][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:33.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:33.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:33.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:33.591][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:33.592][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:33.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:33.593][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:33.594][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:33.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:33.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:33.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:33.597][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:33.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:33.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:33.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:33.600][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:33.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:33.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:33.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:33.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:33.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:33.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:33.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:33.606][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:33.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:33.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:33.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:33.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:33.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:33.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:33.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:33.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:33.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:33.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:33.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:33.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:33.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:33.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:33.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:33.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:33.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:33.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:33.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:33.621][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:33.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:33.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:33.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:33.624][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:33.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:33.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:33.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:33.627][self$createEntryFromContent] Accession numbers: 65641.
biodb.TRACE[2025-03-15 16:04:33.628][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:33.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:33.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:33.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:33.631][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:33.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:33.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:33.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:33.634][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:33.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:33.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:33.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:33.637][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:33.638][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:33.639][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:33.643][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:33.644][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:33.645][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:33.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:33.646][private$loadEntries] Creating entries from ids [1]: "144071".
biodb.DEBUG[2025-03-15 16:04:33.647][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:04:33.648][cch$loadFileContent] Trying to load 1 files from cache: [1]: "144071".
biodb.TRACE[2025-03-15 16:04:33.649][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:04:33.650][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:04:33.651][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:04:33.652][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:04:33.652][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:04:33.653][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:04:33.655][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:33.656][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:33.656][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:33.661][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:33.662][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:33.663][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:33.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:33.664][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=144071".
biodb.DEBUG[2025-03-15 16:04:33.666][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:04:33.667][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:04:33.668][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=144071".
biodb.TRACE[2025-03-15 16:04:34.023][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=144071).
biodb.DEBUG[2025-03-15 16:04:34.379][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:04:34.381][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/147c6b10a8e09e725fbbb250103f039d.content"
biodb.TRACE[2025-03-15 16:04:34.384][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/147c6b10a8e09e725fbbb250103f039d.request"
biodb.TRACE[2025-03-15 16:04:34.386][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/144071.xml"
biodb.DEBUG[2025-03-15 16:04:34.388][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:04:34.389][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:04:34.390][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:04:34.391][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:34.392][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:34.393][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:34.398][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:34.399][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:34.400][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:34.400][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:34.402][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:34.403][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:34.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:34.405][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:34.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:34.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:34.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:34.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:34.409][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:34.410][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:34.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:34.412][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:34.413][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:34.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:34.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:34.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:34.417][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:34.418][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:34.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:34.419][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:34.420][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:34.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:34.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:34.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:34.424][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:34.425][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:34.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:34.426][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:34.427][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:34.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:34.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:34.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:34.431][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:34.432][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:34.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:34.433][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:34.434][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:34.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:34.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:34.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:34.438][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:34.439][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:34.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:34.440][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:34.441][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:34.442][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:34.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:34.444][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:34.445][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:34.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:34.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:34.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:34.448][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:34.449][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:34.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:34.451][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:34.452][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:34.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:34.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:34.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:34.455][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:34.456][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:34.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:34.458][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:34.459][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:34.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:34.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:34.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:34.463][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:34.464][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:34.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:34.465][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:34.466][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:34.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:34.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:34.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:34.470][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:34.471][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:34.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:34.472][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:34.474][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:34.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:34.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:34.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:34.477][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:34.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:34.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:34.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:34.481][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:34.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:34.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:34.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:34.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:34.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:34.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:34.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:34.488][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:34.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:34.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:34.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:34.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:34.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:34.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:34.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:34.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:34.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:34.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:34.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:34.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:34.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:34.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:34.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:34.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:34.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:34.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:34.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:34.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:34.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:34.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:34.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:34.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:34.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:34.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:34.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:34.510][self$createEntryFromContent] Accession numbers: 144071.
biodb.TRACE[2025-03-15 16:04:34.511][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:34.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:34.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:34.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:34.514][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:34.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:34.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:34.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:34.517][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:34.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:34.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:34.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:34.521][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:34.521][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:34.522][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:34.527][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:34.528][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:34.529][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:34.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:34.530][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:34.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:34.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:34.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:34.534][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:34.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:34.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:34.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:34.537][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:34.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:34.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:34.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:34.540][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:34.541][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:34.542][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:34.547][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:34.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:34.548][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:34.549][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:34.550][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:34.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:34.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:34.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:34.553][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:34.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:34.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:34.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:34.557][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:34.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:34.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:34.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:34.560][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:34.560][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:34.561][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:34.566][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:34.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:34.568][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:34.568][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:34.569][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:34.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:34.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:34.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:34.581][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:34.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:34.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:34.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:34.585][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:34.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:34.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:34.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:34.588][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:34.589][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:34.590][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:34.595][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:34.596][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:34.597][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:34.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:34.598][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:34.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:34.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:34.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:34.602][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:34.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:34.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:34.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:34.605][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:34.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:34.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:34.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:34.609][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:34.610][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:34.610][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:34.615][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:34.616][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:34.617][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:34.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:34.619][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:34.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:34.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:34.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:34.622][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:34.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:34.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:34.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:34.625][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:34.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:34.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:34.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:34.628][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:34.629][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:34.629][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:34.634][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:34.635][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:34.636][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:34.637][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:34.638][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:34.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:34.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:34.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:34.641][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:34.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:34.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:34.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:34.644][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:34.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:34.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:34.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:34.648][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:34.648][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:34.649][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:34.654][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:34.655][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:34.656][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:34.657][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:34.658][private$loadEntries] Creating entries from ids [1]: "168650".
biodb.DEBUG[2025-03-15 16:04:34.658][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:04:34.660][cch$loadFileContent] Trying to load 1 files from cache: [1]: "168650".
biodb.TRACE[2025-03-15 16:04:34.661][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:04:34.661][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:04:34.662][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:04:34.663][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:04:34.664][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:04:34.665][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:04:34.667][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:34.667][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:34.668][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:34.673][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:34.674][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:34.675][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:34.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:34.677][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=168650".
biodb.DEBUG[2025-03-15 16:04:34.679][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:04:34.680][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:04:34.681][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=168650".
biodb.TRACE[2025-03-15 16:04:35.037][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=168650).
biodb.DEBUG[2025-03-15 16:04:35.404][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:04:35.406][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fbd7acd341e86313aeb547b3d6d3201b.content"
biodb.TRACE[2025-03-15 16:04:35.409][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fbd7acd341e86313aeb547b3d6d3201b.request"
biodb.TRACE[2025-03-15 16:04:35.412][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/168650.xml"
biodb.DEBUG[2025-03-15 16:04:35.413][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:04:35.414][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:04:35.415][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:04:35.417][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:35.418][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:35.419][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:35.423][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:35.424][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:35.425][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:35.426][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:35.428][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:35.429][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:35.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:35.431][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:35.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:35.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:35.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:35.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:35.435][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:35.436][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:35.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:35.438][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:35.439][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:35.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:35.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:35.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:35.443][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:35.444][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:35.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:35.445][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:35.447][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:35.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:35.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:35.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:35.450][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:35.451][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:35.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:35.453][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:35.454][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:35.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:35.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:35.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:35.458][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:35.459][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:35.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:35.460][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:35.461][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:35.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:35.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:35.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:35.465][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:35.466][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:35.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:35.468][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:35.469][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:35.470][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:35.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:35.472][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:35.473][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:35.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:35.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:35.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:35.477][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:35.478][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:35.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:35.479][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:35.481][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:35.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:35.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:35.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:35.484][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:35.485][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:35.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:35.486][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:35.488][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:35.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:35.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:35.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:35.491][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:35.492][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:35.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:35.494][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:35.495][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:35.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:35.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:35.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:35.499][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:35.499][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:35.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:35.501][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:35.502][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:35.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:35.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:35.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:35.505][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:35.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:35.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:35.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:35.508][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:35.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:35.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:35.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:35.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:35.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:35.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:35.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:35.515][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:35.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:35.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:35.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:35.519][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:35.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:35.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:35.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:35.522][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:35.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:35.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:35.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:35.525][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:35.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:35.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:35.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:35.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:35.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:35.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:35.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:35.532][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:35.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:35.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:35.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:35.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:35.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:35.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:35.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:35.539][self$createEntryFromContent] Accession numbers: 168650.
biodb.TRACE[2025-03-15 16:04:35.540][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:35.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:35.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:35.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:35.543][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:35.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:35.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:35.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:35.547][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:35.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:35.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:35.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:35.550][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:35.551][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:35.552][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:35.557][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:35.558][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:35.559][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:35.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:35.560][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:35.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:35.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:35.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:35.564][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:35.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:35.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:35.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:35.568][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:35.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:35.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:35.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:35.572][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:35.573][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:35.573][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:35.579][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:35.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:35.581][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:35.582][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:35.583][private$loadEntries] Creating entries from ids [1]: "169305".
biodb.DEBUG[2025-03-15 16:04:35.584][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:04:35.585][cch$loadFileContent] Trying to load 1 files from cache: [1]: "169305".
biodb.TRACE[2025-03-15 16:04:35.586][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:04:35.588][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:04:35.589][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:04:35.590][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:04:35.590][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:04:35.591][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:04:35.594][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:35.595][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:35.595][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:35.601][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:35.602][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:35.603][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:35.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:35.605][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169305".
biodb.DEBUG[2025-03-15 16:04:35.608][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:04:35.609][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:04:35.610][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169305".
biodb.TRACE[2025-03-15 16:04:35.963][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169305).
biodb.DEBUG[2025-03-15 16:04:36.334][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:04:36.336][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5eab934e4cfb5514f373385a6170c282.content"
biodb.TRACE[2025-03-15 16:04:36.339][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5eab934e4cfb5514f373385a6170c282.request"
biodb.TRACE[2025-03-15 16:04:36.342][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169305.xml"
biodb.DEBUG[2025-03-15 16:04:36.343][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:04:36.344][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:04:36.345][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:04:36.347][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:36.347][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:36.348][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:36.353][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:36.354][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:36.355][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:36.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:36.357][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:36.358][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:36.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:36.360][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:36.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:36.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:36.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:36.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:36.364][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:36.365][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:36.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:36.367][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:36.368][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:36.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:36.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:36.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:36.371][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:36.372][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:36.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:36.374][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:36.375][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:36.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:36.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:36.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:36.378][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:36.379][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:36.380][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:36.381][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:36.382][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:36.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:36.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:36.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:36.385][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:36.386][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:36.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:36.387][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:36.388][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:36.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:36.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:36.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:36.392][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:36.392][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:36.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:36.394][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:36.395][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:36.396][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:36.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:36.397][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:36.398][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:36.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:36.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:36.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:36.401][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:36.402][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:36.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:36.403][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:36.404][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:36.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:36.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:36.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:36.407][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:36.408][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:36.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:36.409][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:36.410][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:36.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:36.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:36.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:36.413][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:36.414][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:36.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:36.415][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:36.416][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:36.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:36.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:36.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:36.419][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:36.420][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:36.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:36.422][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:36.423][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:36.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:36.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:36.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:36.426][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:36.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:36.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:36.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:36.429][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:36.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:36.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:36.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:36.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:36.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:36.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:36.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:36.435][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:36.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:36.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:36.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:36.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:36.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:36.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:36.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:36.441][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:36.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:36.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:36.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:36.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:36.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:36.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:36.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:36.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:36.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:36.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:36.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:36.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:36.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:36.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:36.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:36.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:36.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:36.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:36.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:36.457][self$createEntryFromContent] Accession numbers: 169305.
biodb.TRACE[2025-03-15 16:04:36.458][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:36.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:36.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:36.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:36.461][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:36.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:36.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:36.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:36.464][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:36.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:36.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:36.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:36.467][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:36.468][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:36.469][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:36.474][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:36.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:36.475][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:36.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:36.476][private$loadEntries] Creating entries from ids [1]: "176869".
biodb.DEBUG[2025-03-15 16:04:36.477][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:04:36.478][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176869".
biodb.TRACE[2025-03-15 16:04:36.479][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:04:36.480][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:04:36.481][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:04:36.482][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:04:36.483][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:04:36.483][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:04:36.485][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:36.486][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:36.487][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:36.492][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:36.492][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:36.493][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:36.494][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:36.495][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176869".
biodb.DEBUG[2025-03-15 16:04:36.497][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:04:36.498][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:04:36.499][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176869".
biodb.TRACE[2025-03-15 16:04:36.851][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176869).
biodb.DEBUG[2025-03-15 16:04:37.203][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:04:37.205][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2c477fa42863c662724815d047e8c32.content"
biodb.TRACE[2025-03-15 16:04:37.209][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2c477fa42863c662724815d047e8c32.request"
biodb.TRACE[2025-03-15 16:04:37.211][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176869.xml"
biodb.DEBUG[2025-03-15 16:04:37.213][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:04:37.214][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:04:37.215][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:04:37.216][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:37.217][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:37.218][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:37.222][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:37.223][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:37.224][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:37.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:37.227][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:37.228][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:37.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:37.230][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:37.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:37.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:37.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:37.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:37.235][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:37.236][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:37.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:37.237][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:37.238][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:37.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:37.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:37.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:37.242][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:37.243][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:37.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:37.245][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:37.246][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:37.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:37.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:37.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:37.249][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:37.250][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:37.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:37.252][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:37.253][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:37.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:37.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:37.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:37.256][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:37.257][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:37.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:37.259][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:37.260][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:37.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:37.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:37.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:37.263][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:37.264][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:37.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:37.266][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:37.267][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:37.268][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:37.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:37.269][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:37.270][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:37.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:37.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:37.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:37.274][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:37.275][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:37.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:37.276][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:37.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:37.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:37.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:37.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:37.280][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:37.281][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:37.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:37.283][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:37.284][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:37.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:37.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:37.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:37.287][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:37.288][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:37.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:37.290][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:37.291][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:37.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:37.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:37.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:37.294][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:37.295][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:37.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:37.297][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:37.298][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:37.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:37.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:37.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:37.301][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:37.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:37.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:37.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:37.305][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:37.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:37.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:37.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:37.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:37.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:37.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:37.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:37.311][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:37.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:37.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:37.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:37.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:37.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:37.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:37.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:37.317][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:37.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:37.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:37.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:37.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:37.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:37.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:37.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:37.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:37.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:37.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:37.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:37.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:37.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:37.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:37.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:37.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:37.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:37.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:37.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:37.346][self$createEntryFromContent] Accession numbers: 176869.
biodb.TRACE[2025-03-15 16:04:37.347][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:37.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:37.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:37.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:37.350][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:37.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:37.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:37.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:37.353][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:37.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:37.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:37.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:37.356][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:37.357][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:37.358][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:37.363][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:37.364][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:37.365][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:37.365][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:37.366][private$loadEntries] Creating entries from ids [1]: "185696".
biodb.DEBUG[2025-03-15 16:04:37.367][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:04:37.368][cch$loadFileContent] Trying to load 1 files from cache: [1]: "185696".
biodb.TRACE[2025-03-15 16:04:37.369][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:04:37.370][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:04:37.371][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:04:37.372][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:04:37.373][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:04:37.374][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:04:37.376][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:37.377][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:37.377][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:37.382][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:37.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:37.384][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:37.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:37.385][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=185696".
biodb.DEBUG[2025-03-15 16:04:37.388][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:04:37.389][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:04:37.390][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=185696".
biodb.TRACE[2025-03-15 16:04:37.739][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=185696).
biodb.DEBUG[2025-03-15 16:04:38.094][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:04:38.095][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/030ac759c83231dbd7b7d6c83788888c.content"
biodb.TRACE[2025-03-15 16:04:38.099][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/030ac759c83231dbd7b7d6c83788888c.request"
biodb.TRACE[2025-03-15 16:04:38.101][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/185696.xml"
biodb.DEBUG[2025-03-15 16:04:38.102][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:04:38.103][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:04:38.104][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:04:38.106][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:38.106][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:38.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:38.112][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:38.113][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:38.114][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:38.114][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:38.116][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:38.117][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:38.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:38.118][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:38.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:38.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:38.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:38.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:38.123][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:38.124][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:38.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:38.125][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:38.126][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:38.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:38.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:38.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:38.129][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:38.130][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:38.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:38.132][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:38.133][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:38.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:38.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:38.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:38.136][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:38.137][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:38.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:38.139][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:38.140][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:38.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:38.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:38.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:38.143][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:38.144][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:38.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:38.145][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:38.146][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:38.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:38.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:38.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:38.150][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:38.151][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:38.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:38.152][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:38.153][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:38.154][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:38.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:38.156][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:38.157][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:38.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:38.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:38.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:38.160][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:38.161][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:38.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:38.162][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:38.163][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:38.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:38.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:38.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:38.167][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:38.168][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:38.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:38.169][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:38.171][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:38.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:38.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:38.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:38.174][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:38.175][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:38.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:38.176][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:38.177][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:38.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:38.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:38.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:38.180][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:38.181][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:38.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:38.183][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:38.184][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:38.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:38.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:38.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:38.187][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:38.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:38.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:38.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:38.190][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:38.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:38.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:38.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:38.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:38.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:38.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:38.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:38.213][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:38.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:38.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:38.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:38.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:38.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:38.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:38.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:38.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:38.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:38.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:38.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:38.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:38.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:38.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:38.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:38.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:38.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:38.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:38.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:38.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:38.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:38.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:38.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:38.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:38.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:38.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:38.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:38.242][self$createEntryFromContent] Accession numbers: 185696.
biodb.TRACE[2025-03-15 16:04:38.243][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:38.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:38.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:38.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:38.247][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:38.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:38.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:38.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:38.250][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:38.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:38.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:38.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:38.253][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:38.254][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:38.255][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:38.259][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:38.260][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:38.261][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:38.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:38.263][private$loadEntries] Creating entries from ids [1]: "190762".
biodb.DEBUG[2025-03-15 16:04:38.264][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:04:38.265][cch$loadFileContent] Trying to load 1 files from cache: [1]: "190762".
biodb.TRACE[2025-03-15 16:04:38.266][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:04:38.267][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:04:38.268][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:04:38.269][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:04:38.270][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:04:38.270][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:04:38.272][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:38.273][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:38.274][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:38.279][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:38.280][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:38.281][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:38.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:38.282][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=190762".
biodb.DEBUG[2025-03-15 16:04:38.285][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:04:38.285][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:04:38.287][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=190762".
biodb.TRACE[2025-03-15 16:04:38.649][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=190762).
biodb.DEBUG[2025-03-15 16:04:39.015][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:04:39.017][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fa9da4de7d7dc0d4458ab1ff7bbbbda0.content"
biodb.TRACE[2025-03-15 16:04:39.020][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fa9da4de7d7dc0d4458ab1ff7bbbbda0.request"
biodb.TRACE[2025-03-15 16:04:39.023][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/190762.xml"
biodb.DEBUG[2025-03-15 16:04:39.024][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:04:39.025][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:04:39.026][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:04:39.027][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:39.028][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:39.029][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:39.034][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:39.035][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:39.036][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:39.036][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:39.038][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:39.039][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:39.040][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:39.040][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:39.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:39.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:39.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:39.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:39.045][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:39.046][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:39.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:39.047][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:39.049][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:39.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:39.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:39.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:39.069][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:39.070][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:39.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:39.071][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:39.072][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:39.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:39.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:39.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:39.076][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:39.077][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:39.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:39.078][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:39.079][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:39.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:39.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:39.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:39.090][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:39.091][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:39.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:39.092][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:39.093][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:39.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:39.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:39.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:39.108][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:39.110][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:39.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:39.112][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:39.113][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:39.114][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:39.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:39.116][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:39.117][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:39.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:39.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:39.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:39.120][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:39.121][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:39.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:39.123][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:39.124][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:39.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:39.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:39.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:39.127][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:39.128][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:39.128][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:39.129][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:39.130][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:39.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:39.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:39.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:39.133][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:39.134][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:39.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:39.135][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:39.136][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:39.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:39.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:39.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:39.140][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:39.141][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:39.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:39.142][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:39.143][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:39.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:39.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:39.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:39.146][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:39.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:39.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:39.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:39.149][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:39.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:39.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:39.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:39.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:39.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:39.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:39.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:39.155][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:39.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:39.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:39.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:39.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:39.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:39.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:39.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:39.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:39.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:39.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:39.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:39.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:39.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:39.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:39.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:39.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:39.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:39.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:39.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:39.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:39.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:39.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:39.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:39.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:39.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:39.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:39.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:39.178][self$createEntryFromContent] Accession numbers: 190762.
biodb.TRACE[2025-03-15 16:04:39.179][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:39.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:39.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:39.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:39.183][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:39.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:39.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:39.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:39.186][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:39.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:39.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:39.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:39.189][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:39.190][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:39.191][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:39.196][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:39.196][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:39.197][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:39.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:39.199][private$loadEntries] Creating entries from ids [1]: "193176".
biodb.DEBUG[2025-03-15 16:04:39.200][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:04:39.201][cch$loadFileContent] Trying to load 1 files from cache: [1]: "193176".
biodb.TRACE[2025-03-15 16:04:39.202][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:04:39.203][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:04:39.204][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:04:39.205][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:04:39.206][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:04:39.207][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:04:39.209][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:39.209][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:39.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:39.215][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:39.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:39.216][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:39.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:39.218][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=193176".
biodb.DEBUG[2025-03-15 16:04:39.220][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:04:39.221][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:04:39.222][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=193176".
biodb.TRACE[2025-03-15 16:04:39.582][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=193176).
biodb.DEBUG[2025-03-15 16:04:39.939][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:04:39.941][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/343c078fd7b00f04bd71e6f2aebb6ed3.content"
biodb.TRACE[2025-03-15 16:04:39.944][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/343c078fd7b00f04bd71e6f2aebb6ed3.request"
biodb.TRACE[2025-03-15 16:04:39.946][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/193176.xml"
biodb.DEBUG[2025-03-15 16:04:39.948][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:04:39.949][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:04:39.949][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:04:39.951][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:39.951][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:39.952][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:39.956][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:39.957][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:39.958][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:39.958][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:39.960][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:39.961][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:39.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:39.962][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:39.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:39.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:39.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:39.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:39.967][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:39.967][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:39.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:39.969][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:39.970][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:39.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:39.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:39.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:39.974][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:39.974][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:39.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:39.976][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:39.977][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:39.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:39.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:39.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:39.980][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:39.981][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:39.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:39.982][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:39.983][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:39.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:39.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:39.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:39.986][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:39.987][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:39.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:39.989][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:39.990][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:39.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:39.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:39.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:39.993][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:39.993][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:39.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:39.995][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:39.996][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:39.997][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:39.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:39.998][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:39.999][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:40.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:40.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:40.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:40.002][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:40.003][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:40.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:40.004][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:40.005][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:40.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:40.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:40.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:40.009][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:40.009][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:40.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:40.011][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:40.012][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:40.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:40.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:40.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:40.015][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:40.016][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:40.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:40.018][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:40.019][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:40.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:40.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:40.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:40.022][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:40.023][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:40.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:40.024][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:40.025][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:40.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:40.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:40.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:40.029][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:40.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:40.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:40.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:40.032][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:40.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:40.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:40.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:40.035][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:40.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:40.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:40.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:40.039][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:40.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:40.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:40.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:40.042][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:40.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:40.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:40.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:40.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:40.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:40.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:40.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:40.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:40.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:40.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:40.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:40.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:40.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:40.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:40.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:40.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:40.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:40.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:40.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:40.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:40.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:40.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:40.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:40.060][self$createEntryFromContent] Accession numbers: 193176.
biodb.TRACE[2025-03-15 16:04:40.061][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:40.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:40.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:40.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:40.064][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:40.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:40.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:40.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:40.067][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:40.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:40.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:40.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:40.071][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:40.071][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:40.072][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:40.077][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:40.077][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:40.078][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:40.079][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:40.079][private$loadEntries] Creating entries from ids [1]: "196395".
biodb.DEBUG[2025-03-15 16:04:40.080][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:04:40.081][cch$loadFileContent] Trying to load 1 files from cache: [1]: "196395".
biodb.TRACE[2025-03-15 16:04:40.083][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:04:40.083][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:04:40.084][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:04:40.085][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:04:40.086][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:04:40.086][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:04:40.088][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:40.089][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:40.090][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:40.095][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:40.096][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:40.096][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:40.097][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:40.098][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=196395".
biodb.DEBUG[2025-03-15 16:04:40.100][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:04:40.110][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:04:40.112][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=196395".
biodb.TRACE[2025-03-15 16:04:40.472][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=196395).
biodb.DEBUG[2025-03-15 16:04:40.830][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:04:40.832][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/73421bc681b7c5ac1a6297ef414ac513.content"
biodb.TRACE[2025-03-15 16:04:40.836][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/73421bc681b7c5ac1a6297ef414ac513.request"
biodb.TRACE[2025-03-15 16:04:40.839][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/196395.xml"
biodb.DEBUG[2025-03-15 16:04:40.840][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:04:40.841][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:04:40.842][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:04:40.844][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:40.845][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:40.845][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:40.850][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:40.851][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:40.852][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:40.853][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:40.855][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:40.856][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:40.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:40.857][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:40.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:40.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:40.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:40.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:40.861][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:40.862][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:40.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:40.864][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:40.865][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:40.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:40.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:40.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:40.868][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:40.869][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:40.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:40.871][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:40.872][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:40.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:40.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:40.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:40.876][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:40.876][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:40.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:40.878][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:40.879][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:40.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:40.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:40.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:40.882][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:40.884][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:40.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:40.885][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:40.886][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:40.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:40.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:40.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:40.890][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:40.890][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:40.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:40.892][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:40.893][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:40.894][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:40.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:40.896][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:40.897][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:40.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:40.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:40.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:40.900][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:40.901][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:40.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:40.902][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:40.904][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:40.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:40.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:40.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:40.907][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:40.908][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:40.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:40.909][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:40.910][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:40.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:40.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:40.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:40.914][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:40.915][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:40.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:40.916][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:40.917][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:40.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:40.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:40.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:40.920][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:40.921][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:40.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:40.923][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:40.924][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:40.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:40.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:40.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:40.928][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:40.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:40.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:40.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:40.931][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:40.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:40.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:40.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:40.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:40.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:40.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:40.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:40.938][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:40.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:40.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:40.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:40.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:40.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:40.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:40.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:40.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:40.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:40.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:40.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:40.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:40.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:40.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:40.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:40.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:40.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:40.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:40.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:40.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:40.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:40.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:40.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:40.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:40.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:40.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:40.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:40.961][self$createEntryFromContent] Accession numbers: 196395.
biodb.TRACE[2025-03-15 16:04:40.962][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:40.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:40.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:40.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:40.965][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:40.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:40.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:40.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:40.968][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:40.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:40.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:40.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:40.971][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:40.972][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:40.973][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:40.978][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:40.979][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:40.980][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:40.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:40.981][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:40.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:40.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:40.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:40.985][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:40.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:40.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:40.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:40.988][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:40.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:40.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:40.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:40.991][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:04:40.993][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:40.994][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:40.995][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:41.000][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:41.001][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:41.001][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:41.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:41.003][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.007][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.010][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:41.011][private$selectFields]
biodb.TRACE[2025-03-15 16:04:41.011][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:41.012][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:41.013][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:41.014][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.015][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.016][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.017][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.018][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.019][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.020][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:41.021][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:41.022][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.023][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.024][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.025][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:41.026][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.029][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.032][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.036][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-03-15 16:04:41.036][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:41.037][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:41.038][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:41.043][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:41.044][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:41.044][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:41.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:41.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.049][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.052][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:41.053][private$selectFields]
biodb.TRACE[2025-03-15 16:04:41.054][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:41.055][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:41.055][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:41.056][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.057][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.058][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.058][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.059][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.060][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.062][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.063][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:41.064][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:41.064][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.065][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.067][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.068][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:41.068][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.072][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.079][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-03-15 16:04:41.080][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:41.080][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:41.081][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:41.086][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:41.087][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:41.088][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:41.088][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:41.089][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.093][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.096][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:41.096][private$selectFields]
biodb.TRACE[2025-03-15 16:04:41.097][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:41.098][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:41.099][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:41.100][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.100][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.102][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.103][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.104][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.105][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.106][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:41.107][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:41.108][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.108][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.110][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.111][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:41.112][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.124][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.128][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.132][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-03-15 16:04:41.132][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:04:41.133][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:04:41.154][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:41.155][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:41.156][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:41.160][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:41.161][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:41.162][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:41.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:41.165][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:04:41.167][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:04:41.168][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ebf8c17fa19fb0caf99d83ca8441a2ac".
biodb.TRACE[2025-03-15 16:04:41.169][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:04:41.170][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ebf8c17fa19fb0caf99d83ca8441a2ac.content".
biodb.DEBUG[2025-03-15 16:04:41.175][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:41.176][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:41.177][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:41.182][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:41.182][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:41.183][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:41.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:41.185][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.188][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.191][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:41.194][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:41.195][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:41.196][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:41.201][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:41.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:41.203][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:41.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:41.205][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.208][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.211][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:41.215][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:41.216][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:41.216][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:41.222][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:41.222][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:41.223][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:41.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:41.225][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.228][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.232][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:41.235][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:41.236][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:41.237][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:41.242][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:41.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:41.244][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:41.245][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:41.246][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.249][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.252][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:41.256][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:04:41.257][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:41.258][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:41.259][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:41.264][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:41.265][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:41.265][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:41.266][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:41.267][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.270][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.274][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:41.275][private$selectFields]
biodb.TRACE[2025-03-15 16:04:41.275][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:41.276][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:41.277][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:41.278][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.279][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.280][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.281][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.282][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.284][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.284][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:41.285][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:41.286][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.287][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.289][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.290][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:41.291][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.294][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.297][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.301][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-03-15 16:04:41.302][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:41.303][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:41.304][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:41.309][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:41.309][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:41.310][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:41.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:41.312][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.315][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.319][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:41.319][private$selectFields]
biodb.TRACE[2025-03-15 16:04:41.320][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:41.321][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:41.322][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:41.323][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.323][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.325][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.326][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.327][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.328][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.329][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:41.330][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:41.331][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.332][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.333][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.334][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:41.335][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.338][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.341][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.345][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [8021].
biodb.DEBUG[2025-03-15 16:04:41.346][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:41.347][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:41.348][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:41.352][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:41.353][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:41.354][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:41.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:41.356][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.360][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.363][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:41.364][private$selectFields]
biodb.TRACE[2025-03-15 16:04:41.364][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:41.365][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:41.366][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:41.367][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.368][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.370][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.370][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.371][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.373][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.374][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:41.375][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:41.376][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.376][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.378][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.379][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:41.380][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.383][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.387][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.390][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [30382].
biodb.DEBUG[2025-03-15 16:04:41.391][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:04:41.392][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:04:41.394][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:41.394][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:41.395][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:41.400][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:41.401][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:41.401][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:41.402][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:41.405][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:04:41.407][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:04:41.409][cch$loadFileContent] Trying to load 1 files from cache: [1]: "152225e020c3e5947a0f5a90f021cee7".
biodb.TRACE[2025-03-15 16:04:41.410][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:04:41.411][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/152225e020c3e5947a0f5a90f021cee7.content".
biodb.DEBUG[2025-03-15 16:04:41.414][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:41.415][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:41.416][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:41.420][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:41.421][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:41.422][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:41.423][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:41.424][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.428][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.439][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:41.442][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:41.443][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:41.444][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:41.449][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:41.450][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:41.451][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:41.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:41.452][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.456][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.459][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:41.463][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:41.463][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:41.464][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:41.469][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:41.470][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:41.471][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:41.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:41.472][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.476][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.479][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:41.483][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:41.484][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:41.484][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:41.489][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:41.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:41.491][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:41.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:41.493][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.496][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.500][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:41.503][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:41.504][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:41.505][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:41.510][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:41.511][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:41.512][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:41.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:41.513][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.517][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.520][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:41.523][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:41.524][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:41.525][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:41.530][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:41.531][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:41.532][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:41.532][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:41.533][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.537][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.540][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:41.544][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:41.545][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:41.545][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:41.550][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:41.551][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:41.552][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:41.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:41.554][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.558][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.561][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:41.565][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:04:41.566][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:41.567][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:41.568][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:41.573][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:41.574][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:41.575][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:41.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:41.576][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.580][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.583][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:41.584][private$selectFields]
biodb.TRACE[2025-03-15 16:04:41.585][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:41.585][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:41.586][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:41.587][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.588][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.590][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.591][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.591][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.593][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.594][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:41.595][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:41.596][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.597][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.598][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.599][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:41.600][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.603][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.607][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.610][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65530].
biodb.DEBUG[2025-03-15 16:04:41.612][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:41.612][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:41.613][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:41.618][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:41.619][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:41.620][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:41.621][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:41.622][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.626][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.629][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:41.630][private$selectFields]
biodb.TRACE[2025-03-15 16:04:41.631][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:41.632][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:41.633][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:41.634][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.635][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.636][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.637][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.638][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.640][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.641][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:41.641][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:41.642][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.643][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.645][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.645][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:41.646][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.650][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.653][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.656][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [90204].
biodb.DEBUG[2025-03-15 16:04:41.657][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:41.658][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:41.659][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:41.664][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:41.665][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:41.666][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:41.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:41.667][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.671][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.674][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:41.675][private$selectFields]
biodb.TRACE[2025-03-15 16:04:41.676][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:41.676][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:41.677][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:41.678][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.679][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.681][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.681][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.682][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.684][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.685][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:41.686][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:41.687][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.688][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.689][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.690][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:41.691][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.694][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.698][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.720][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132793].
biodb.DEBUG[2025-03-15 16:04:41.721][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:04:41.721][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:04:41.723][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:41.724][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:41.725][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:41.730][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:41.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:41.736][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:41.737][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:41.739][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:04:41.742][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:04:41.743][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9686ce9c957a368dd8f5b4cc9c5b15b3".
biodb.TRACE[2025-03-15 16:04:41.744][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:04:41.745][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9686ce9c957a368dd8f5b4cc9c5b15b3.content".
biodb.DEBUG[2025-03-15 16:04:41.747][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:41.748][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:41.748][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:41.753][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:41.754][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:41.755][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:41.756][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:41.757][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.760][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.770][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:41.774][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:41.775][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:41.776][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:41.781][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:41.782][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:41.783][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:41.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:41.785][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.788][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.791][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:41.795][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:04:41.798][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:04:41.799][cch$loadFileContent] Trying to load 1 files from cache: [1]: "5d833e77a1be58060d0c3916a1e1b293".
biodb.TRACE[2025-03-15 16:04:41.800][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:04:41.801][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5d833e77a1be58060d0c3916a1e1b293.content".
biodb.DEBUG[2025-03-15 16:04:41.803][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:41.804][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:41.805][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:41.810][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:41.811][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:41.812][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:41.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:41.813][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.817][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.821][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:41.824][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:41.825][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:41.825][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:41.830][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:41.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:41.832][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:41.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:41.834][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.837][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.841][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:41.844][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:41.845][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:41.846][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:41.851][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:41.852][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:41.852][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:41.853][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:41.854][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.858][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.861][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:41.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:41.865][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:04:41.866][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:41.867][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:41.868][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:41.873][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:41.873][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:41.874][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:41.875][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:41.876][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.880][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.883][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:41.884][private$selectFields]
biodb.TRACE[2025-03-15 16:04:41.885][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:41.886][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:41.887][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:41.888][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.888][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.890][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.891][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.892][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.893][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.894][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:41.895][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:41.896][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.897][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.898][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.899][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:41.900][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.903][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.907][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.910][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51836].
biodb.DEBUG[2025-03-15 16:04:41.911][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:41.912][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:41.913][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:41.918][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:41.919][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:41.920][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:41.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:41.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.925][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.929][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:41.930][private$selectFields]
biodb.TRACE[2025-03-15 16:04:41.930][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:41.931][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:41.932][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:41.933][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.934][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.935][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.936][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.937][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.939][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.940][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:41.940][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:41.941][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.942][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.944][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.945][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:41.945][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.949][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.952][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.956][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51837].
biodb.DEBUG[2025-03-15 16:04:41.957][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:41.957][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:41.958][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:41.963][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:41.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:41.965][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:41.965][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:41.966][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.970][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.973][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:41.974][private$selectFields]
biodb.TRACE[2025-03-15 16:04:41.975][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:41.975][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:41.976][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:41.977][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.978][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.979][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.980][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.981][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.983][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.983][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:41.984][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:41.985][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.986][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.987][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.988][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:41.989][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.992][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.995][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:41.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:41.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:41.999][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132205].
biodb.DEBUG[2025-03-15 16:04:42.000][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:04:42.001][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:04:42.021][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:42.022][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:42.022][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:42.027][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:42.028][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:42.029][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:42.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:42.032][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:04:42.035][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:04:42.036][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-03-15 16:04:42.038][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:04:42.039][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-03-15 16:04:42.041][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:42.041][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:42.042][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:42.047][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:42.048][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:42.049][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:42.050][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:42.051][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.054][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.057][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:42.061][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:04:42.064][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:04:42.065][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-03-15 16:04:42.066][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:04:42.067][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-03-15 16:04:42.070][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:42.070][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:42.071][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:42.082][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:42.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:42.085][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:42.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:42.087][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.090][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.094][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:42.097][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:42.098][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:42.099][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:42.104][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:42.105][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:42.105][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:42.106][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:42.107][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.111][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.114][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:42.117][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:04:42.118][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:42.119][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:42.120][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:42.124][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:42.125][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:42.126][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:42.127][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:42.128][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.131][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.134][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:42.135][private$selectFields]
biodb.TRACE[2025-03-15 16:04:42.135][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:42.136][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:42.137][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:42.137][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.138][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.140][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.141][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.142][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.142][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.143][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.144][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:42.145][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:42.146][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.147][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.148][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.149][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:42.150][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.153][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.160][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-03-15 16:04:42.161][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:42.161][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:42.162][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:42.167][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:42.168][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:42.168][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:42.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:42.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.174][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.177][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:42.177][private$selectFields]
biodb.TRACE[2025-03-15 16:04:42.178][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:42.179][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:42.179][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:42.180][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.181][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.182][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.183][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.184][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.185][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.186][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.187][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:42.187][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:42.188][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.189][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.191][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.191][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:42.192][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.195][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.199][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.202][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-03-15 16:04:42.203][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:42.204][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:42.205][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:42.210][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:42.211][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:42.211][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:42.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:42.213][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.216][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.220][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:42.220][private$selectFields]
biodb.TRACE[2025-03-15 16:04:42.221][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:42.222][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:42.223][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:42.224][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.225][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.226][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.227][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.228][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.229][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.230][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:42.231][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:42.232][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.233][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.234][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.235][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:42.236][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.239][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.242][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.246][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-03-15 16:04:42.246][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:04:42.247][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:04:42.249][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:42.249][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:42.250][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:42.255][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:42.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:42.256][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:42.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:42.260][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:04:42.262][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:04:42.263][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2025-03-15 16:04:42.264][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:04:42.266][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2025-03-15 16:04:42.268][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:42.269][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:42.269][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:42.275][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:42.276][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:42.276][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:42.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:42.278][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.281][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.285][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:42.288][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:42.289][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:42.290][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:42.295][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:42.295][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:42.296][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:42.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:42.298][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.301][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.305][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:42.309][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:04:42.311][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:04:42.312][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2025-03-15 16:04:42.313][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:04:42.315][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2025-03-15 16:04:42.317][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:42.318][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:42.318][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:42.324][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:42.324][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:42.325][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:42.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:42.327][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.330][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.334][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:42.337][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:42.338][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:42.339][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:42.344][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:42.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:42.346][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:42.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:42.348][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.351][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.354][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:42.358][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:42.358][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:42.359][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:42.364][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:42.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:42.366][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:42.366][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:42.367][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.371][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.374][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:42.384][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:04:42.386][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:42.387][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:42.387][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:42.392][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:42.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:42.394][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:42.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:42.396][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.399][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.402][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:42.403][private$selectFields]
biodb.TRACE[2025-03-15 16:04:42.404][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:42.404][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:42.405][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:42.406][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.407][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.408][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.409][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.410][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.412][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.412][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:42.413][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:42.414][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.415][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.416][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.417][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:42.418][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.421][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.424][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.427][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-03-15 16:04:42.428][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:42.429][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:42.430][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:42.435][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:42.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:42.436][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:42.437][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:42.438][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.441][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.445][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:42.446][private$selectFields]
biodb.TRACE[2025-03-15 16:04:42.446][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:42.447][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:42.448][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:42.449][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.450][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.451][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.452][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.453][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.455][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.456][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:42.456][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:42.457][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.458][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.460][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.460][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:42.461][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.465][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.468][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.472][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-03-15 16:04:42.473][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:42.473][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:42.474][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:42.479][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:42.480][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:42.481][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:42.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:42.482][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.486][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.489][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:42.490][private$selectFields]
biodb.TRACE[2025-03-15 16:04:42.490][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:42.491][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:42.492][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:42.493][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.493][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.495][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.496][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.496][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.498][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.499][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:42.499][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:42.500][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.501][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.502][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.503][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:42.504][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.507][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.510][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.514][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-03-15 16:04:42.514][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:04:42.515][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:04:42.516][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:42.517][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:42.518][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:42.523][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:42.523][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:42.524][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:42.525][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:42.527][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:04:42.529][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:04:42.531][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2025-03-15 16:04:42.532][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:04:42.533][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2025-03-15 16:04:42.534][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:42.535][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:42.536][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:42.540][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:42.541][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:42.542][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:42.543][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:42.543][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.546][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.549][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:42.552][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:42.553][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:42.554][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:42.559][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:42.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:42.560][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:42.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:42.562][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.565][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.568][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:42.571][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:42.572][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:42.573][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:42.577][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:42.578][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:42.579][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:42.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:42.580][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.583][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.586][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:42.590][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:42.590][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:42.591][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:42.596][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:42.596][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:42.597][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:42.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:42.599][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.602][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.605][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:42.608][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:42.609][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:42.610][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:42.614][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:42.615][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:42.616][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:42.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:42.617][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.620][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.623][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:42.627][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:42.627][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:42.628][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:42.633][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:42.634][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:42.634][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:42.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:42.636][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.640][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.643][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:42.646][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:42.647][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:42.647][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:42.652][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:42.653][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:42.654][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:42.655][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:42.655][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.659][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.662][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:42.671][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:42.672][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:42.673][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:42.678][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:42.679][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:42.679][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:42.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:42.681][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.684][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.686][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:42.690][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:04:42.692][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:04:42.693][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2025-03-15 16:04:42.694][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:04:42.695][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2025-03-15 16:04:42.697][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:42.698][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:42.698][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:42.703][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:42.704][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:42.704][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:42.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:42.706][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.709][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.711][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:42.714][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:42.715][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:42.716][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:42.720][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:42.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:42.721][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:42.722][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:42.723][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.726][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.729][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:42.732][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:42.732][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:42.733][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:42.738][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:42.738][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:42.739][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:42.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:42.741][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.744][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.747][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:42.750][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:04:42.752][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:42.752][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:42.753][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:42.757][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:42.758][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:42.759][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:42.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:42.760][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.763][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.766][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:42.767][private$selectFields]
biodb.TRACE[2025-03-15 16:04:42.768][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:42.769][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:42.769][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:42.770][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.771][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.773][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.773][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.774][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.776][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.776][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:42.777][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:42.778][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.779][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.780][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.781][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:42.782][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.785][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.788][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.792][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-03-15 16:04:42.792][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:42.793][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:42.794][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:42.798][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:42.799][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:42.800][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:42.800][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:42.801][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.804][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.807][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:42.808][private$selectFields]
biodb.TRACE[2025-03-15 16:04:42.809][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:42.809][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:42.810][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:42.811][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.812][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.813][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.814][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.815][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.816][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.817][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:42.818][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:42.818][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.819][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.820][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.821][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:42.822][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.825][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.828][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.831][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-03-15 16:04:42.832][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:42.832][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:42.833][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:42.838][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:42.839][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:42.839][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:42.840][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:42.841][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.844][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.847][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:42.848][private$selectFields]
biodb.TRACE[2025-03-15 16:04:42.848][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:42.849][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:42.850][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:42.851][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.852][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.853][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.854][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.854][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.856][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.857][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:42.857][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:42.858][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.859][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.860][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.861][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:42.862][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.865][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.868][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:42.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.871][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-03-15 16:04:42.872][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:04:42.873][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:04:42.892][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:42.893][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:42.894][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:42.898][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:42.899][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:42.899][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:42.900][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:42.902][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:04:42.905][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:04:42.906][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2b6f29bb7a7663ff23fb5e7dcae5c27f".
biodb.TRACE[2025-03-15 16:04:42.907][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:04:42.908][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2b6f29bb7a7663ff23fb5e7dcae5c27f.content".
biodb.DEBUG[2025-03-15 16:04:42.911][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:42.911][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:42.912][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:42.917][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:42.917][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:42.918][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:42.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:42.920][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.923][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.926][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:42.929][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:42.930][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:42.930][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:42.935][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:42.936][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:42.936][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:42.937][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:42.938][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.941][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.950][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:42.953][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:42.954][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:42.955][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:42.960][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:42.960][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:42.961][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:42.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:42.962][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.965][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.968][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:42.971][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:42.971][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:42.972][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:42.977][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:42.978][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:42.978][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:42.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:42.980][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.983][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:42.985][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:42.988][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:42.989][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:42.990][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:42.994][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:42.995][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:42.996][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:42.996][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:42.997][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:42.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:42.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.000][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.003][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:43.007][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:43.007][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:43.008][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:43.012][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:43.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:43.014][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:43.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:43.015][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.018][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.021][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:43.024][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:04:43.026][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:43.026][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:43.027][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:43.032][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:43.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:43.033][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:43.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:43.035][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.038][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.041][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:43.042][private$selectFields]
biodb.TRACE[2025-03-15 16:04:43.043][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:43.044][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:43.044][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:43.045][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.046][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.047][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.048][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.049][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.050][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.051][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:43.052][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:43.053][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.054][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.055][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.055][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.056][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:43.057][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.060][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.064][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.067][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-03-15 16:04:43.068][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:43.069][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:43.069][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:43.074][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:43.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:43.075][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:43.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:43.077][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.080][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.083][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:43.083][private$selectFields]
biodb.TRACE[2025-03-15 16:04:43.084][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:43.085][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:43.085][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:43.086][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.087][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.088][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.089][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.090][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.091][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.092][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:43.093][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:43.094][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.095][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.096][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.097][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:43.098][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.101][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.104][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.108][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [28243].
biodb.DEBUG[2025-03-15 16:04:43.109][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:43.109][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:43.110][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:43.115][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:43.115][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:43.116][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:43.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:43.118][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.124][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:43.125][private$selectFields]
biodb.TRACE[2025-03-15 16:04:43.125][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:43.126][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:43.127][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:43.127][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.128][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.129][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.130][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.131][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.133][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.134][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:43.134][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:43.135][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.136][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.137][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.138][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:43.139][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.142][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.145][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.148][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [78144].
biodb.DEBUG[2025-03-15 16:04:43.149][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:04:43.150][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:04:43.151][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:43.152][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:43.153][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:43.158][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:43.159][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:43.159][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:43.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:43.162][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:04:43.165][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:04:43.166][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9a13652ab89a613a3b0e10d3b6cb10a0".
biodb.TRACE[2025-03-15 16:04:43.167][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:04:43.168][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9a13652ab89a613a3b0e10d3b6cb10a0.content".
biodb.DEBUG[2025-03-15 16:04:43.172][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:43.172][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:43.173][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:43.178][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:43.179][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:43.180][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:43.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:43.181][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.185][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.188][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:43.191][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:43.192][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:43.193][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:43.197][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:43.198][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:43.199][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:43.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:43.200][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.204][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.207][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:43.210][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:43.211][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:43.212][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:43.232][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:43.233][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:43.234][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:43.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:43.236][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.239][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.254][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:43.258][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:04:43.259][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:43.260][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:43.261][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:43.266][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:43.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:43.267][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:43.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:43.269][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.272][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.275][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:43.276][private$selectFields]
biodb.TRACE[2025-03-15 16:04:43.277][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:43.278][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:43.278][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:43.279][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.280][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.282][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.283][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.283][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.285][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.286][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:43.287][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:43.287][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.288][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.290][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.291][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:43.292][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.298][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.302][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-03-15 16:04:43.302][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:43.303][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:43.304][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:43.308][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:43.309][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:43.310][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:43.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:43.311][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.314][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.317][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:43.318][private$selectFields]
biodb.TRACE[2025-03-15 16:04:43.319][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:43.319][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:43.320][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:43.321][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.322][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.323][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.324][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.325][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.326][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.327][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:43.328][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:43.328][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.329][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.330][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.331][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:43.332][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.335][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.338][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.341][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-03-15 16:04:43.342][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:43.343][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:43.344][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:43.348][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:43.349][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:43.350][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:43.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:43.351][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.354][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.358][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:43.358][private$selectFields]
biodb.TRACE[2025-03-15 16:04:43.359][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:43.360][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:43.361][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:43.362][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.362][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.364][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.364][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.365][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.367][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.367][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:43.368][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:43.369][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.370][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.371][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.372][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:43.372][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.375][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.378][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:43.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.381][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-03-15 16:04:43.382][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:04:43.383][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:04:43.384][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:43.385][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:43.386][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:43.390][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:43.391][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:43.391][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:43.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:43.394][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:04:43.397][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:04:43.398][cch$loadFileContent] Trying to load 1 files from cache: [1]: "a985300ab8a01d49254fbf993ad91279".
biodb.TRACE[2025-03-15 16:04:43.399][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:04:43.400][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a985300ab8a01d49254fbf993ad91279.content".
biodb.DEBUG[2025-03-15 16:04:43.402][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:43.403][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:43.404][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:43.409][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:43.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:43.410][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:43.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:43.412][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.415][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.418][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:43.422][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:43.422][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:43.423][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:43.428][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:43.429][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:43.430][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:43.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:43.432][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.435][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.438][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:43.442][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:43.442][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:43.443][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:43.448][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:43.448][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:43.449][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:43.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:43.451][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.454][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.458][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:43.461][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:43.462][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:43.462][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:43.467][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:43.468][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:43.469][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:43.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:43.470][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.473][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.477][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:43.480][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:43.481][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:43.481][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:43.486][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:43.487][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:43.488][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:43.488][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:43.489][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.493][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.496][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:43.499][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:43.499][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:43.500][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:43.505][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:43.506][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:43.506][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:43.507][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:43.508][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.512][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.515][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:43.519][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:43.519][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:43.520][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:43.525][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:43.526][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:43.526][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:43.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:43.528][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.532][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.541][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:43.545][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:43.546][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:43.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:43.551][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:43.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:43.553][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:43.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:43.555][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.559][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.562][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:43.565][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:43.566][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:43.567][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:43.572][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:43.573][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:43.574][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:43.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:43.576][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.579][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.583][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:43.586][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:43.587][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:43.588][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:43.593][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:43.594][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:43.595][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:43.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:43.597][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.600][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.604][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:43.608][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:43.609][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:43.609][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:43.616][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:43.617][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:43.618][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:43.618][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:43.619][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.623][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.627][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:43.631][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:43.632][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:43.633][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:43.640][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:43.642][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:43.643][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:43.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:43.645][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.651][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.655][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:43.660][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:43.661][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:43.662][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:43.670][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:43.671][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:43.672][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:43.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:43.675][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.679][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.682][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:43.686][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:43.687][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:43.687][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:43.693][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:43.694][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:43.695][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:43.696][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:43.697][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.702][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.706][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:43.710][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:43.711][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:43.711][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:43.717][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:43.718][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:43.719][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:43.720][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:43.721][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.725][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.729][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:43.732][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:43.733][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:43.734][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:43.740][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:43.741][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:43.742][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:43.743][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:43.744][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.748][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.752][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:43.755][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:43.756][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:43.756][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:43.761][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:43.762][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:43.763][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:43.764][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:43.765][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.768][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.771][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:43.775][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:43.775][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:43.776][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:43.781][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:43.782][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:43.783][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:43.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:43.784][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.788][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.791][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:43.794][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:43.795][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:43.796][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:43.801][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:43.802][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:43.803][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:43.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:43.805][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.808][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.812][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:43.815][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:43.816][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:43.817][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:43.822][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:43.823][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:43.823][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:43.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:43.825][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.829][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.832][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:43.835][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:43.836][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:43.836][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:43.841][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:43.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:43.843][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:43.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:43.845][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.848][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.851][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:43.854][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:43.855][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:43.856][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:43.861][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:43.862][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:43.863][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:43.863][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:43.864][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.868][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.877][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:43.881][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:43.882][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:43.882][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:43.888][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:43.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:43.889][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:43.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:43.891][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.894][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.897][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:43.900][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:43.901][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:43.902][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:43.906][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:43.907][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:43.908][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:43.909][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:43.910][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.912][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.916][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:43.918][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:43.919][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:43.920][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:43.925][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:43.926][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:43.926][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:43.927][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:43.928][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.931][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.934][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:43.937][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:43.938][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:43.939][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:43.943][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:43.944][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:43.945][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:43.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:43.946][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.949][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.952][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:43.955][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:43.956][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:43.956][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:43.962][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:43.962][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:43.963][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:43.964][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:43.965][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.968][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.971][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:43.974][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:43.974][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:43.975][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:43.980][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:43.981][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:43.982][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:43.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:43.984][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.987][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:43.990][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:43.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:43.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:43.994][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:04:43.995][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:43.996][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:43.996][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:44.001][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:44.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:44.003][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:44.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:44.005][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:44.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:44.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:44.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:44.008][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:44.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:44.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:44.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:44.012][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:44.012][private$selectFields]
biodb.TRACE[2025-03-15 16:04:44.013][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:44.014][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:44.015][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:44.015][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:44.016][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:44.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:44.018][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:44.019][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:44.020][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:44.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:44.021][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:44.022][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:44.023][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:44.024][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:44.024][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:44.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:44.026][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:44.027][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:44.028][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:44.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:44.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:44.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:44.031][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:44.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:44.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:44.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:44.035][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:44.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:44.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:44.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:44.038][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-03-15 16:04:44.039][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:44.040][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:44.041][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:44.045][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:44.046][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:44.047][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:44.048][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:44.049][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:44.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:44.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:44.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:44.052][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:44.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:44.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:44.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:44.055][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:44.056][private$selectFields]
biodb.TRACE[2025-03-15 16:04:44.057][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:44.058][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:44.059][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:44.059][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:44.060][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:44.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:44.061][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:44.062][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:44.063][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:44.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:44.065][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:44.065][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:44.066][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:44.067][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:44.068][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:44.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:44.069][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:44.070][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:44.071][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:44.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:44.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:44.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:44.074][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:44.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:44.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:44.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:44.077][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:44.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:44.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:44.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:44.081][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-03-15 16:04:44.081][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:44.082][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:44.083][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:44.088][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:44.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:44.089][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:44.090][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:44.091][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:44.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:44.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:44.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:44.094][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:44.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:44.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:44.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:44.097][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:44.098][private$selectFields]
biodb.TRACE[2025-03-15 16:04:44.099][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:44.099][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:44.100][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:44.101][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:44.102][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:44.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:44.103][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:44.104][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:44.105][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:44.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:44.107][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:44.107][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:44.108][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:44.109][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:44.110][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:44.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:44.111][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:44.112][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:44.113][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:44.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:44.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:44.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:44.116][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:44.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:44.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:44.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:44.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:44.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:44.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:44.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:44.123][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-03-15 16:04:44.124][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:04:44.125][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-03-15 16:04:44.143][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:44.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:44.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:44.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:44.147][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:44.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:44.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:44.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:44.150][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:44.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:44.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:44.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:44.154][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:44.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:44.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:44.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:44.157][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:44.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:44.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:44.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:44.160][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:44.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:44.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:44.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:44.169][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:44.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:44.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:44.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:44.173][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:44.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:44.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:44.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:44.176][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:44.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:44.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:44.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:44.179][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:44.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:44.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:44.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:44.182][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:44.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:44.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:44.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:44.186][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:44.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:44.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:44.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:44.190][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:44.191][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:44.192][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:44.197][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:44.198][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:44.198][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:44.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:44.202][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:04:44.204][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:04:44.205][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:04:44.206][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-03-15 16:04:44.572][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-03-15 16:04:45.185][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:04:45.203][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.content"
biodb.TRACE[2025-03-15 16:04:45.207][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.request"
biodb.DEBUG[2025-03-15 16:04:45.213][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:45.214][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:45.216][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:45.227][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:45.228][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:45.229][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:45.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:45.230][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:45.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:45.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:45.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:45.233][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:45.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:45.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:45.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:45.237][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:45.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:45.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:45.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:45.240][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:45.241][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:45.242][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:45.247][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:45.248][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:45.249][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:45.250][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:45.250][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:45.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:45.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:45.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:45.254][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:45.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:45.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:45.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:45.257][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:45.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:45.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:45.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:45.260][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:45.261][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:45.262][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:45.267][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:45.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:45.268][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:45.269][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:45.270][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:45.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:45.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:45.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:45.274][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:45.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:45.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:45.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:45.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:45.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:45.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:45.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:45.281][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:45.281][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:45.282][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:45.287][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:45.288][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:45.289][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:45.290][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:45.291][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:45.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:45.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:45.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:45.294][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:45.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:45.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:45.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:45.297][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:45.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:45.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:45.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:45.300][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:45.301][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:45.302][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:45.307][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:45.308][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:45.308][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:45.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:45.310][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:45.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:45.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:45.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:45.313][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:45.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:45.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:45.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:45.317][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:45.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:45.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:45.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:45.320][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:45.321][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:45.322][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:45.327][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:45.327][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:45.328][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:45.329][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:45.330][private$loadEntries] Creating entries from ids [1]: "9442".
biodb.DEBUG[2025-03-15 16:04:45.331][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:04:45.332][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9442".
biodb.TRACE[2025-03-15 16:04:45.333][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:04:45.334][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:04:45.335][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:04:45.336][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:04:45.336][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:04:45.337][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:04:45.340][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:45.340][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:45.341][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:45.346][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:45.347][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:45.348][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:45.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:45.350][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9442".
biodb.DEBUG[2025-03-15 16:04:45.352][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:04:45.353][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:04:45.354][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9442".
biodb.TRACE[2025-03-15 16:04:45.714][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9442).
biodb.DEBUG[2025-03-15 16:04:46.094][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:04:46.096][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7d1576b26aed79f4c1d758a3f87c749b.content"
biodb.TRACE[2025-03-15 16:04:46.100][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7d1576b26aed79f4c1d758a3f87c749b.request"
biodb.TRACE[2025-03-15 16:04:46.102][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9442.xml"
biodb.DEBUG[2025-03-15 16:04:46.103][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:04:46.105][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:04:46.106][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:04:46.107][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:46.107][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:46.108][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:46.113][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:46.113][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:46.114][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:46.115][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:46.117][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:46.118][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:46.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:46.119][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:46.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:46.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:46.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:46.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:46.123][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:46.124][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:46.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:46.126][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:46.127][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:46.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:46.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:46.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:46.130][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:46.130][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:46.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:46.132][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:46.133][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:46.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:46.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:46.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:46.136][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:46.137][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:46.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:46.138][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:46.139][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:46.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:46.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:46.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:46.142][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:46.143][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:46.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:46.145][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:46.146][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:46.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:46.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:46.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:46.149][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:46.150][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:46.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:46.152][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:46.153][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:46.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:46.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:46.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:46.156][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:46.157][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:46.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:46.158][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:46.159][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:46.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:46.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:46.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:46.163][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:46.163][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:46.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:46.165][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:46.166][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:46.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:46.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:46.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:46.169][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:46.170][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:46.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:46.171][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:46.172][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:46.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:46.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:46.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:46.176][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:46.176][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:46.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:46.178][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:46.179][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:46.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:46.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:46.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:46.182][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:46.183][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:46.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:46.184][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:46.185][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:46.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:46.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:46.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:46.189][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:46.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:46.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:46.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:46.191][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:46.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:46.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:46.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:46.195][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:46.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:46.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:46.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:46.211][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:46.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:46.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:46.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:46.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:46.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:46.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:46.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:46.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:46.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:46.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:46.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:46.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:46.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:46.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:46.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:46.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:46.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:46.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:46.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:46.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:46.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:46.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:46.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:46.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:46.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:46.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:46.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:46.232][self$createEntryFromContent] Accession numbers: 9442.
biodb.TRACE[2025-03-15 16:04:46.233][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:46.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:46.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:46.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:46.236][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:46.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:46.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:46.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:46.239][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:46.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:46.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:46.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:46.242][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:46.243][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:46.244][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:46.249][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:46.249][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:46.250][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:46.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:46.251][private$loadEntries] Creating entries from ids [1]: "34764".
biodb.DEBUG[2025-03-15 16:04:46.252][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:04:46.253][cch$loadFileContent] Trying to load 1 files from cache: [1]: "34764".
biodb.TRACE[2025-03-15 16:04:46.254][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:04:46.255][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:04:46.256][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:04:46.257][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:04:46.258][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:04:46.259][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:04:46.261][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:46.261][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:46.262][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:46.267][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:46.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:46.268][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:46.269][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:46.270][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=34764".
biodb.DEBUG[2025-03-15 16:04:46.272][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:04:46.272][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:04:46.273][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=34764".
biodb.TRACE[2025-03-15 16:04:46.628][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=34764).
biodb.DEBUG[2025-03-15 16:04:46.996][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:04:46.997][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a38508ac0dc37ed2da31f7bda33ae97f.content"
biodb.TRACE[2025-03-15 16:04:47.004][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a38508ac0dc37ed2da31f7bda33ae97f.request"
biodb.TRACE[2025-03-15 16:04:47.006][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/34764.xml"
biodb.DEBUG[2025-03-15 16:04:47.008][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:04:47.012][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:04:47.015][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:04:47.016][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:47.017][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:47.018][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:47.023][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:47.024][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:47.025][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:47.025][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:47.028][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:47.028][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:47.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:47.030][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:47.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:47.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:47.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:47.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:47.035][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:47.036][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:47.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:47.037][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:47.038][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:47.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:47.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:47.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:47.041][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:47.042][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:47.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:47.044][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:47.045][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:47.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:47.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:47.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:47.048][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:47.049][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:47.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:47.051][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:47.052][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:47.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:47.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:47.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:47.055][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:47.056][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:47.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:47.058][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:47.058][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:47.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:47.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:47.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:47.062][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:47.063][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:47.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:47.064][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:47.065][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:47.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:47.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:47.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:47.069][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:47.069][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:47.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:47.071][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:47.072][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:47.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:47.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:47.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:47.075][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:47.076][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:47.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:47.078][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:47.079][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:47.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:47.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:47.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:47.082][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:47.083][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:47.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:47.084][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:47.086][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:47.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:47.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:47.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:47.089][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:47.090][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:47.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:47.091][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:47.092][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:47.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:47.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:47.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:47.096][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:47.097][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:47.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:47.098][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:47.099][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:47.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:47.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:47.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:47.103][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:47.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:47.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:47.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:47.106][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:47.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:47.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:47.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:47.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:47.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:47.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:47.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:47.112][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:47.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:47.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:47.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:47.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:47.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:47.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:47.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:47.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:47.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:47.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:47.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:47.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:47.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:47.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:47.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:47.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:47.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:47.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:47.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:47.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:47.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:47.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:47.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:47.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:47.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:47.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:47.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:47.136][self$createEntryFromContent] Accession numbers: 34764.
biodb.TRACE[2025-03-15 16:04:47.137][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:47.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:47.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:47.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:47.140][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:47.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:47.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:47.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:47.143][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:47.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:47.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:47.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:47.147][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:04:47.148][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:47.149][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:47.150][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:47.155][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:47.156][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:47.157][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:47.157][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:47.159][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:47.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:47.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:47.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:47.162][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:47.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:47.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:47.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:47.166][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:47.166][private$selectFields]
biodb.TRACE[2025-03-15 16:04:47.167][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:47.168][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:47.169][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:47.170][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:47.171][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:47.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:47.173][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:47.173][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:47.174][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:47.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:47.176][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:47.177][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:47.178][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:47.179][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:47.180][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:47.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:47.181][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:47.182][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:47.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:47.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:47.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:47.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:47.187][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:47.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:47.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:47.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:47.190][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:47.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:47.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:47.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:47.194][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-03-15 16:04:47.195][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:47.195][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:47.196][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:47.201][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:47.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:47.203][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:47.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:47.205][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:47.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:47.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:47.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:47.208][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:47.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:47.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:47.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:47.212][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:47.213][private$selectFields]
biodb.TRACE[2025-03-15 16:04:47.213][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:47.214][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:47.215][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:47.216][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:47.217][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:47.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:47.219][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:47.246][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:47.247][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:47.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:47.249][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:47.250][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:47.251][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:47.252][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:47.253][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:47.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:47.255][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:47.256][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:47.257][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:47.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:47.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:47.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:47.260][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:47.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:47.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:47.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:47.263][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:47.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:47.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:47.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:47.267][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-03-15 16:04:47.268][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:47.268][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:47.269][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:47.274][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:47.275][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:47.276][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:47.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:47.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:47.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:47.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:47.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:47.281][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:47.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:47.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:47.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:47.285][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:47.285][private$selectFields]
biodb.TRACE[2025-03-15 16:04:47.286][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:47.287][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:47.288][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:47.289][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:47.289][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:47.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:47.291][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:47.292][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:47.293][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:47.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:47.294][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:47.295][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:47.296][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:47.296][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:47.297][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:47.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:47.299][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:47.300][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:47.300][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:47.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:47.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:47.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:47.304][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:47.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:47.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:47.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:47.307][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:47.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:47.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:47.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:47.310][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [34764].
biodb.DEBUG[2025-03-15 16:04:47.311][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:04:47.312][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:04:47.314][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:47.315][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:47.315][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:47.320][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:47.321][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:47.322][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:47.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:47.325][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:04:47.328][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:04:47.329][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:04:47.331][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-03-15 16:04:47.708][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-03-15 16:04:48.389][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:04:48.391][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365d4ea5e0e90826806fec708da6c9ab.content"
biodb.TRACE[2025-03-15 16:04:48.394][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365d4ea5e0e90826806fec708da6c9ab.request"
biodb.DEBUG[2025-03-15 16:04:48.400][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:48.401][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:48.402][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:48.407][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:48.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:48.409][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:48.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:48.411][private$loadEntries] Creating entries from ids [1]: "2535".
biodb.DEBUG[2025-03-15 16:04:48.411][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:04:48.413][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2535".
biodb.TRACE[2025-03-15 16:04:48.414][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:04:48.414][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:04:48.415][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:04:48.416][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:04:48.417][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:04:48.418][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:04:48.420][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:48.421][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:48.421][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:48.426][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:48.427][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:48.428][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:48.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:48.430][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2535".
biodb.DEBUG[2025-03-15 16:04:48.432][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:04:48.433][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:04:48.434][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2535".
biodb.TRACE[2025-03-15 16:04:48.798][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2535).
biodb.DEBUG[2025-03-15 16:04:49.166][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:04:49.168][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e1d9514645c3005d4e4f643b2d18f099.content"
biodb.TRACE[2025-03-15 16:04:49.171][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e1d9514645c3005d4e4f643b2d18f099.request"
biodb.TRACE[2025-03-15 16:04:49.173][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2535.xml"
biodb.DEBUG[2025-03-15 16:04:49.174][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:04:49.175][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:04:49.176][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:04:49.177][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:49.178][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:49.179][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:49.183][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:49.184][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:49.185][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:49.186][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:49.188][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:49.189][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:49.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:49.190][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:49.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:49.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:49.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:49.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:49.194][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:49.195][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:49.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:49.197][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:49.198][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:49.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:49.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:49.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:49.201][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:49.202][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:49.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:49.204][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:49.205][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:49.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:49.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:49.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:49.208][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:49.209][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:49.210][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:49.211][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:49.212][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:49.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:49.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:49.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:49.215][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:49.216][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:49.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:49.218][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:49.218][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:49.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:49.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:49.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:49.222][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:49.223][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:49.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:49.224][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:49.225][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:49.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:49.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:49.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:49.229][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:49.229][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:49.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:49.231][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:49.232][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:49.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:49.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:49.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:49.236][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:49.237][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:49.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:49.239][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:49.240][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:49.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:49.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:49.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:49.243][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:49.244][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:49.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:49.246][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:49.247][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:49.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:49.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:49.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:49.251][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:49.252][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:49.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:49.253][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:49.254][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:49.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:49.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:49.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:49.258][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:49.259][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:49.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:49.260][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:49.261][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:49.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:49.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:49.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:49.264][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:49.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:49.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:49.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:49.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:49.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:49.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:49.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:49.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:49.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:49.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:49.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:49.274][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:49.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:49.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:49.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:49.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:49.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:49.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:49.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:49.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:49.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:49.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:49.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:49.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:49.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:49.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:49.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:49.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:49.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:49.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:49.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:49.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:49.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:49.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:49.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:49.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:49.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:49.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:49.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:49.300][self$createEntryFromContent] Accession numbers: 2535.
biodb.TRACE[2025-03-15 16:04:49.301][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:49.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:49.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:49.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:49.304][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:49.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:49.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:49.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:49.308][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:49.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:49.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:49.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:49.312][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:49.312][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:49.313][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:49.318][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:49.319][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:49.320][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:49.321][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:49.322][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:49.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:49.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:49.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:49.325][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:49.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:49.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:49.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:49.341][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:49.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:49.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:49.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:49.344][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:49.345][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:49.346][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:49.351][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:49.351][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:49.352][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:49.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:49.354][private$loadEntries] Creating entries from ids [1]: "5525".
biodb.DEBUG[2025-03-15 16:04:49.354][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:04:49.356][cch$loadFileContent] Trying to load 1 files from cache: [1]: "5525".
biodb.TRACE[2025-03-15 16:04:49.357][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:04:49.358][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:04:49.359][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:04:49.359][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:04:49.360][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:04:49.361][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:04:49.363][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:49.364][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:49.364][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:49.369][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:49.370][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:49.371][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:49.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:49.373][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=5525".
biodb.DEBUG[2025-03-15 16:04:49.375][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:04:49.375][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:04:49.377][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=5525".
biodb.TRACE[2025-03-15 16:04:49.740][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=5525).
biodb.DEBUG[2025-03-15 16:04:50.111][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:04:50.113][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8c1563abc6b93d34a6b6b66375881583.content"
biodb.TRACE[2025-03-15 16:04:50.116][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8c1563abc6b93d34a6b6b66375881583.request"
biodb.TRACE[2025-03-15 16:04:50.119][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5525.xml"
biodb.DEBUG[2025-03-15 16:04:50.120][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:04:50.121][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:04:50.122][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:04:50.124][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:50.124][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:50.125][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:50.130][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:50.131][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:50.132][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:50.132][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:50.134][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:50.135][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:50.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:50.137][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:50.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:50.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:50.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:50.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:50.141][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:50.142][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:50.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:50.144][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:50.145][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:50.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:50.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:50.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:50.148][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:50.148][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:50.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:50.150][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:50.151][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:50.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:50.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:50.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:50.154][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:50.155][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:50.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:50.156][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:50.157][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:50.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:50.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:50.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:50.161][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:50.162][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:50.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:50.163][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:50.164][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:50.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:50.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:50.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:50.168][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:50.169][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:50.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:50.170][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:50.171][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:50.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:50.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:50.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:50.175][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:50.176][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:50.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:50.177][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:50.178][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:50.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:50.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:50.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:50.182][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:50.182][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:50.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:50.184][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:50.185][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:50.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:50.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:50.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:50.188][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:50.189][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:50.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:50.191][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:50.192][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:50.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:50.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:50.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:50.195][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:50.196][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:50.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:50.197][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:50.198][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:50.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:50.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:50.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:50.202][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:50.202][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:50.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:50.204][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:50.205][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:50.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:50.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:50.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:50.208][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:50.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:50.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:50.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:50.211][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:50.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:50.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:50.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:50.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:50.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:50.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:50.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:50.218][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:50.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:50.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:50.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:50.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:50.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:50.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:50.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:50.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:50.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:50.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:50.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:50.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:50.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:50.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:50.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:50.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:50.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:50.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:50.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:50.234][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:50.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:50.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:50.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:50.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:50.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:50.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:50.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:50.240][self$createEntryFromContent] Accession numbers: 5525.
biodb.TRACE[2025-03-15 16:04:50.241][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:50.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:50.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:50.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:50.245][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:50.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:50.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:50.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:50.248][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:50.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:50.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:50.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:50.251][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:50.252][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:50.252][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:50.257][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:50.258][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:50.259][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:50.260][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:50.261][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:50.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:50.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:50.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:50.264][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:50.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:50.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:50.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:50.267][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:50.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:50.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:50.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:50.271][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:04:50.272][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:50.273][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:50.273][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:50.278][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:50.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:50.280][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:50.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:50.282][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:50.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:50.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:50.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:50.285][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:50.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:50.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:50.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:50.288][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:50.289][private$selectFields]
biodb.TRACE[2025-03-15 16:04:50.290][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:50.291][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:50.291][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:50.292][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:50.293][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:50.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:50.295][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:50.295][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:50.296][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:50.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:50.298][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:50.299][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:50.300][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:50.300][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:50.301][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:50.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:50.303][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:50.304][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:50.304][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:50.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:50.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:50.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:50.308][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:50.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:50.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:50.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:50.311][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:50.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:50.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:50.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:50.315][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [2535].
biodb.DEBUG[2025-03-15 16:04:50.315][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:50.316][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:50.317][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:50.322][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:50.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:50.323][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:50.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:50.325][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:50.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:50.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:50.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:50.328][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:50.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:50.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:50.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:50.331][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:50.331][private$selectFields]
biodb.TRACE[2025-03-15 16:04:50.332][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:50.333][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:50.333][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:50.334][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:50.335][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:50.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:50.336][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:50.337][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:50.338][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:50.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:50.339][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:50.340][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:50.341][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:50.342][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:50.343][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:50.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:50.344][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:50.345][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:50.346][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:50.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:50.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:50.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:50.349][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:50.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:50.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:50.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:50.357][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:50.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:50.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:50.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:50.364][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-03-15 16:04:50.365][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:50.366][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:50.367][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:50.371][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:50.372][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:50.373][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:50.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:50.375][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:50.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:50.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:50.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:50.378][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:50.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:50.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:50.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:50.381][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:50.382][private$selectFields]
biodb.TRACE[2025-03-15 16:04:50.383][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:50.383][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:50.384][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:50.385][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:50.386][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:50.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:50.387][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:50.388][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:50.389][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:50.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:50.390][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:50.391][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:50.392][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:50.392][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:50.393][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:50.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:50.395][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:50.395][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:50.396][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:50.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:50.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:50.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:50.399][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:50.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:50.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:50.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:50.403][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:50.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:50.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:50.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:50.406][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-03-15 16:04:50.407][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:04:50.408][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:04:50.409][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:50.410][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:50.411][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:50.415][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:50.416][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:50.417][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:50.418][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:50.420][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:04:50.423][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:04:50.423][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:04:50.425][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-03-15 16:04:50.785][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-03-15 16:04:51.143][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:04:51.145][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7b0416ab2d5cbf869f248000c039a8e8.content"
biodb.TRACE[2025-03-15 16:04:51.148][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7b0416ab2d5cbf869f248000c039a8e8.request"
biodb.DEBUG[2025-03-15 16:04:51.151][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:51.152][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:51.153][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:51.157][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:51.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:51.159][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:51.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:51.161][private$loadEntries] Creating entries from ids [1]: "31303".
biodb.DEBUG[2025-03-15 16:04:51.161][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:04:51.163][cch$loadFileContent] Trying to load 1 files from cache: [1]: "31303".
biodb.TRACE[2025-03-15 16:04:51.164][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:04:51.164][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:04:51.165][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:04:51.166][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:04:51.167][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:04:51.167][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:04:51.169][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:51.170][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:51.171][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:51.176][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:51.177][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:51.178][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:51.178][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:51.179][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=31303".
biodb.DEBUG[2025-03-15 16:04:51.182][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:04:51.183][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:04:51.184][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=31303".
biodb.TRACE[2025-03-15 16:04:51.546][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=31303).
biodb.DEBUG[2025-03-15 16:04:51.914][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:04:51.916][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/99089a071b7e4bcfb0ef9a12b49b39b2.content"
biodb.TRACE[2025-03-15 16:04:51.919][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/99089a071b7e4bcfb0ef9a12b49b39b2.request"
biodb.TRACE[2025-03-15 16:04:51.922][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/31303.xml"
biodb.DEBUG[2025-03-15 16:04:51.923][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:04:51.924][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:04:51.925][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:04:51.926][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:51.927][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:51.928][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:51.933][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:51.934][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:51.935][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:51.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:51.938][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:51.939][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:51.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:51.940][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:51.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:51.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:51.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:51.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:51.945][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:51.946][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:51.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:51.947][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:51.948][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:51.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:51.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:51.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:51.952][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:51.952][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:51.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:51.954][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:51.955][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:51.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:51.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:51.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:51.958][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:51.959][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:51.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:51.960][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:51.961][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:51.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:51.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:51.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:51.964][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:51.965][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:51.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:51.967][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:51.968][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:51.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:51.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:51.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:51.971][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:51.972][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:51.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:51.974][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:51.975][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:51.975][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:51.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:51.977][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:51.978][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:51.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:51.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:51.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:51.981][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:51.982][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:51.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:51.984][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:51.985][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:51.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:51.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:51.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:51.988][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:51.989][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:51.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:51.990][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:51.991][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:51.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:51.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:51.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:51.995][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:51.995][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:51.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:51.997][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:51.998][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:51.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:51.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:52.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:52.001][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:52.002][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:52.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:52.003][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:52.004][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:52.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:52.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:52.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:52.008][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:52.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:52.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:52.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:52.011][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:52.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:52.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:52.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:52.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:52.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:52.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:52.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:52.017][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:52.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:52.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:52.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:52.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:52.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:52.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:52.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:52.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:52.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:52.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:52.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:52.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:52.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:52.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:52.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:52.030][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:52.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:52.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:52.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:52.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:52.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:52.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:52.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:52.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:52.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:52.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:52.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:52.039][self$createEntryFromContent] Accession numbers: 31303.
biodb.TRACE[2025-03-15 16:04:52.040][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:52.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:52.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:52.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:52.043][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:52.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:52.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:52.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:52.046][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:52.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:52.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:52.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:52.050][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:52.050][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:52.051][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:52.056][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:52.057][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:52.058][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:52.058][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:52.059][private$loadEntries] Creating entries from ids [1]: "37118".
biodb.DEBUG[2025-03-15 16:04:52.060][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:04:52.061][cch$loadFileContent] Trying to load 1 files from cache: [1]: "37118".
biodb.TRACE[2025-03-15 16:04:52.062][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:04:52.063][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:04:52.064][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:04:52.065][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:04:52.066][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:04:52.067][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:04:52.069][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:52.070][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:52.071][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:52.076][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:52.076][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:52.077][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:52.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:52.079][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=37118".
biodb.DEBUG[2025-03-15 16:04:52.081][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:04:52.082][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:04:52.083][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=37118".
biodb.TRACE[2025-03-15 16:04:52.456][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=37118).
biodb.DEBUG[2025-03-15 16:04:52.808][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:04:52.810][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37e09c6197385dffaf0a241198ec6309.content"
biodb.TRACE[2025-03-15 16:04:52.827][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37e09c6197385dffaf0a241198ec6309.request"
biodb.TRACE[2025-03-15 16:04:52.830][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37118.xml"
biodb.DEBUG[2025-03-15 16:04:52.831][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:04:52.833][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:04:52.834][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:04:52.835][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:52.836][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:52.837][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:52.842][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:52.843][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:52.843][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:52.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:52.846][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:52.847][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:52.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:52.849][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:52.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:52.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:52.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:52.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:52.853][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:52.854][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:52.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:52.855][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:52.856][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:52.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:52.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:52.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:52.859][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:52.860][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:52.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:52.861][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:52.862][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:52.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:52.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:52.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:52.865][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:52.866][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:52.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:52.868][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:52.869][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:52.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:52.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:52.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:52.872][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:52.872][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:52.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:52.874][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:52.875][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:52.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:52.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:52.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:52.878][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:52.879][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:52.880][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:52.881][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:52.882][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:52.882][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:52.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:52.884][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:52.885][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:52.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:52.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:52.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:52.888][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:52.889][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:52.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:52.890][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:52.891][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:52.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:52.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:52.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:52.894][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:52.895][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:52.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:52.896][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:52.897][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:52.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:52.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:52.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:52.901][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:52.902][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:52.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:52.903][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:52.904][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:52.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:52.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:52.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:52.908][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:52.908][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:52.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:52.910][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:52.911][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:52.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:52.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:52.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:52.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:52.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:52.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:52.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:52.917][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:52.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:52.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:52.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:52.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:52.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:52.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:52.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:52.925][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:52.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:52.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:52.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:52.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:52.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:52.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:52.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:52.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:52.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:52.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:52.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:52.934][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:52.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:52.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:52.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:52.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:52.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:52.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:52.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:52.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:52.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:52.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:52.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:52.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:52.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:52.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:52.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:52.947][self$createEntryFromContent] Accession numbers: 37118.
biodb.TRACE[2025-03-15 16:04:52.948][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:52.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:52.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:52.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:52.951][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:52.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:52.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:52.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:52.954][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:52.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:52.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:52.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:52.957][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:52.957][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:52.958][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:52.963][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:52.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:52.965][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:52.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:52.966][private$loadEntries] Creating entries from ids [1]: "39424".
biodb.DEBUG[2025-03-15 16:04:52.967][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:04:52.968][cch$loadFileContent] Trying to load 1 files from cache: [1]: "39424".
biodb.TRACE[2025-03-15 16:04:52.969][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:04:52.970][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:04:52.971][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:04:52.972][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:04:52.973][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:04:52.973][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:04:52.975][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:52.976][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:52.977][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:52.982][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:52.983][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:52.984][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:52.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:52.985][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=39424".
biodb.DEBUG[2025-03-15 16:04:52.988][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:04:52.988][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:04:52.989][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=39424".
biodb.TRACE[2025-03-15 16:04:53.358][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=39424).
biodb.DEBUG[2025-03-15 16:04:53.726][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:04:53.728][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/da5bac251de02a0ce66c3d69c0d59bb8.content"
biodb.TRACE[2025-03-15 16:04:53.731][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/da5bac251de02a0ce66c3d69c0d59bb8.request"
biodb.TRACE[2025-03-15 16:04:53.734][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/39424.xml"
biodb.DEBUG[2025-03-15 16:04:53.735][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:04:53.736][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:04:53.737][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:04:53.739][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:53.739][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:53.740][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:53.745][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:53.746][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:53.747][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:53.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:53.749][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:53.750][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:53.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:53.752][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:53.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:53.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:53.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:53.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:53.756][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:53.756][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:53.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:53.758][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:53.759][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:53.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:53.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:53.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:53.762][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:53.763][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:53.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:53.764][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:53.766][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:53.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:53.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:53.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:53.769][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:53.770][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:53.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:53.771][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:53.772][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:53.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:53.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:53.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:53.775][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:53.776][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:53.777][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:53.778][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:53.779][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:53.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:53.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:53.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:53.782][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:53.783][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:53.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:53.784][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:53.785][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:53.786][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:53.786][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:53.787][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:53.788][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:53.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:53.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:53.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:53.791][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:53.792][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:53.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:53.794][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:53.795][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:53.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:53.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:53.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:53.798][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:53.799][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:53.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:53.800][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:53.801][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:53.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:53.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:53.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:53.805][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:53.806][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:53.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:53.807][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:53.808][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:53.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:53.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:53.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:53.811][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:53.812][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:53.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:53.813][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:53.815][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:53.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:53.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:53.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:53.818][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:53.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:53.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:53.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:53.821][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:53.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:53.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:53.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:53.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:53.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:53.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:53.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:53.828][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:53.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:53.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:53.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:53.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:53.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:53.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:53.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:53.834][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:53.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:53.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:53.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:53.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:53.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:53.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:53.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:53.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:53.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:53.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:53.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:53.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:53.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:53.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:53.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:53.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:53.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:53.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:53.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:53.859][self$createEntryFromContent] Accession numbers: 39424.
biodb.TRACE[2025-03-15 16:04:53.860][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:53.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:53.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:53.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:53.863][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:53.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:53.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:53.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:53.883][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:53.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:53.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:53.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:53.886][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:53.887][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:53.888][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:53.893][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:53.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:53.895][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:53.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:53.903][private$loadEntries] Creating entries from ids [1]: "81767".
biodb.DEBUG[2025-03-15 16:04:53.903][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:04:53.905][cch$loadFileContent] Trying to load 1 files from cache: [1]: "81767".
biodb.TRACE[2025-03-15 16:04:53.906][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:04:53.907][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:04:53.908][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:04:53.908][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:04:53.909][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:04:53.910][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:04:53.912][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:53.913][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:53.914][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:53.918][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:53.919][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:53.920][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:53.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:53.922][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=81767".
biodb.DEBUG[2025-03-15 16:04:53.924][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:04:53.925][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:04:53.928][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=81767".
biodb.TRACE[2025-03-15 16:04:54.288][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=81767).
biodb.DEBUG[2025-03-15 16:04:54.658][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:04:54.660][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6d9dc9192959d977e17745ebfa06bb73.content"
biodb.TRACE[2025-03-15 16:04:54.663][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6d9dc9192959d977e17745ebfa06bb73.request"
biodb.TRACE[2025-03-15 16:04:54.665][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/81767.xml"
biodb.DEBUG[2025-03-15 16:04:54.667][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:04:54.668][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:04:54.669][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:04:54.670][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:54.671][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:54.672][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:54.677][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:54.678][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:54.678][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:54.679][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:54.681][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:54.682][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:54.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:54.683][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:54.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:54.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:54.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:54.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:54.687][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:54.688][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:54.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:54.689][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:54.690][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:54.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:54.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:54.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:54.694][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:54.695][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:54.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:54.696][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:54.698][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:54.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:54.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:54.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:54.701][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:54.701][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:54.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:54.703][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:54.704][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:54.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:54.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:54.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:54.708][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:54.708][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:54.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:54.710][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:54.711][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:54.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:54.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:54.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:54.715][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:54.715][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:54.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:54.717][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:54.718][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:54.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:54.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:54.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:54.721][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:54.722][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:54.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:54.724][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:54.725][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:54.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:54.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:54.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:54.728][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:54.729][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:54.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:54.731][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:54.732][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:54.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:54.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:54.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:54.735][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:54.736][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:54.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:54.737][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:54.738][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:54.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:54.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:54.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:54.742][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:54.743][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:54.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:54.744][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:54.745][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:54.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:54.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:54.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:54.749][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:54.749][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:54.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:54.764][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:54.765][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:54.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:54.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:54.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:54.769][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:54.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:54.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:54.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:54.772][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:54.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:54.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:54.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:54.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:54.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:54.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:54.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:54.779][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:54.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:54.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:54.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:54.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:54.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:54.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:54.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:54.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:54.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:54.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:54.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:54.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:54.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:54.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:54.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:54.792][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:54.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:54.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:54.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:54.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:54.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:54.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:54.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:54.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:54.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:54.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:54.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:54.801][self$createEntryFromContent] Accession numbers: 81767.
biodb.TRACE[2025-03-15 16:04:54.802][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:54.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:54.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:54.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:54.806][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:54.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:54.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:54.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:54.809][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:54.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:54.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:54.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:54.813][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:54.813][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:54.814][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:54.819][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:54.820][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:54.821][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:54.821][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:54.822][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:54.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:54.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:54.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:54.826][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:54.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:54.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:54.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:54.829][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:54.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:54.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:54.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:54.832][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:04:54.833][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:54.834][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:54.835][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:54.839][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:54.840][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:54.841][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:54.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:54.843][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:54.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:54.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:54.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:54.846][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:54.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:54.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:54.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:54.849][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:54.850][private$selectFields]
biodb.TRACE[2025-03-15 16:04:54.851][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:54.852][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:54.853][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:54.853][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:54.854][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:54.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:54.856][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:54.857][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:54.857][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:54.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:54.859][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:54.859][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:54.860][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:54.861][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:54.862][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:54.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:54.863][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:54.864][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:54.865][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:54.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:54.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:54.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:54.868][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:54.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:54.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:54.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:54.871][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:54.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:54.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:54.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:54.875][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [31303].
biodb.DEBUG[2025-03-15 16:04:54.875][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:54.876][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:54.877][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:54.882][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:54.883][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:54.883][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:54.884][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:54.885][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:54.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:54.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:54.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:54.888][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:54.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:54.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:54.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:54.891][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:54.892][private$selectFields]
biodb.TRACE[2025-03-15 16:04:54.893][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:54.893][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:54.894][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:54.901][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:54.905][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:54.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:54.907][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:54.908][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:54.909][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:54.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:54.910][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:54.911][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:54.912][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:54.913][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:54.914][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:54.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:54.915][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:54.916][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:54.917][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:54.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:54.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:54.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:54.919][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:54.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:54.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:54.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:54.923][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:54.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:54.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:54.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:54.926][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [81767].
biodb.DEBUG[2025-03-15 16:04:54.927][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:54.927][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:54.928][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:54.933][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:54.934][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:54.935][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:54.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:54.936][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:54.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:54.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:54.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:54.939][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:54.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:54.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:54.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:54.942][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:54.943][private$selectFields]
biodb.TRACE[2025-03-15 16:04:54.944][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:54.945][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:54.946][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:54.947][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:54.948][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:54.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:54.949][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:54.950][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:54.951][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:54.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:54.953][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:54.954][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:54.954][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:54.955][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:54.956][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:54.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:54.958][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:54.958][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:54.959][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:54.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:54.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:54.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:54.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:54.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:54.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:54.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:54.966][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:54.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:54.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:54.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:54.969][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [131378].
biodb.DEBUG[2025-03-15 16:04:54.970][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:04:54.971][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:04:54.992][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:54.993][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:54.994][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:54.998][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:54.999][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:55.000][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:55.001][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:55.003][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:04:55.006][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:04:55.008][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-03-15 16:04:55.009][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:04:55.010][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-03-15 16:04:55.012][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:04:55.015][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:04:55.016][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-03-15 16:04:55.017][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:04:55.018][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-03-15 16:04:55.020][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:55.021][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:55.022][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:55.027][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:55.028][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:55.029][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:55.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:55.030][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:55.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:55.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.034][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:55.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:55.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.038][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:55.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:55.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:55.041][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:55.041][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:55.042][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:55.047][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:55.048][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:55.049][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:55.050][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:55.051][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:55.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:55.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.054][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:55.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:55.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.057][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:55.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:55.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:55.060][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:55.061][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:55.062][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:55.067][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:55.068][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:55.069][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:55.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:55.070][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:55.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:55.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.074][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:55.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:55.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.077][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:55.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:55.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:55.080][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:04:55.081][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:55.082][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:55.083][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:55.088][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:55.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:55.090][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:55.090][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:55.091][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.095][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.098][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:55.099][private$selectFields]
biodb.TRACE[2025-03-15 16:04:55.100][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:55.100][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:55.101][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:55.102][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.103][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.104][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.105][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.106][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.107][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.108][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:55.109][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:55.110][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.111][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.112][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.113][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:55.114][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.117][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.125][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-03-15 16:04:55.125][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:55.126][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:55.127][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:55.132][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:55.133][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:55.133][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:55.134][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:55.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.138][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.142][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:55.142][private$selectFields]
biodb.TRACE[2025-03-15 16:04:55.143][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:55.144][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:55.145][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:55.146][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.146][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.148][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.149][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.149][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.151][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.152][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:55.152][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:55.153][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.154][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.156][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.156][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:55.157][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.160][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.163][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.167][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-03-15 16:04:55.168][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:55.169][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:55.170][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:55.174][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:55.175][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:55.176][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:55.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:55.178][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.184][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:55.185][private$selectFields]
biodb.TRACE[2025-03-15 16:04:55.185][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:55.186][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:55.187][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:55.188][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.188][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.190][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.191][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.191][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.193][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.194][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:55.195][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:55.196][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.203][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.204][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.205][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.206][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:55.207][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.210][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.214][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.217][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-03-15 16:04:55.218][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:04:55.219][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:04:55.220][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:55.221][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:55.222][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:55.227][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:55.228][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:55.229][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:55.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:55.232][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:04:55.234][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:04:55.235][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2025-03-15 16:04:55.236][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:04:55.237][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2025-03-15 16:04:55.239][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:55.240][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:55.241][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:55.246][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:55.247][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:55.248][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:55.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:55.249][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:55.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:55.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.252][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:55.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:55.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.255][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:55.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:55.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:55.258][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:55.259][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:55.260][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:55.265][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:55.266][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:55.266][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:55.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:55.268][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:55.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:55.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.272][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:55.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:55.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.275][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:55.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:55.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:55.278][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:55.279][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:55.279][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:55.285][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:55.285][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:55.286][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:55.287][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:55.288][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:55.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:55.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.291][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:55.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:55.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.294][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:55.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:55.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:55.298][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:04:55.299][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:55.300][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:55.300][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:55.305][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:55.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:55.307][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:55.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:55.309][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.312][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.315][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:55.316][private$selectFields]
biodb.TRACE[2025-03-15 16:04:55.317][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:55.317][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:55.318][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:55.319][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.320][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.321][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.322][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.323][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.324][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.325][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:55.326][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:55.327][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.327][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.329][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.330][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:55.330][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.334][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.337][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.340][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-03-15 16:04:55.341][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:55.342][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:55.343][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:55.347][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:55.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:55.349][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:55.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:55.350][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.354][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.357][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:55.358][private$selectFields]
biodb.TRACE[2025-03-15 16:04:55.358][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:55.359][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:55.360][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:55.360][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.361][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.363][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.363][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.364][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.366][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.366][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:55.367][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:55.368][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.369][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.370][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.371][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:55.372][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.375][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.378][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.381][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-03-15 16:04:55.382][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:55.383][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:55.383][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:55.388][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:55.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:55.390][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:55.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:55.391][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.394][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.398][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:55.398][private$selectFields]
biodb.TRACE[2025-03-15 16:04:55.399][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:55.400][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:55.400][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:55.401][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.402][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.403][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.404][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.405][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.406][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.407][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:55.408][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:55.409][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.409][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.411][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.412][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:55.412][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.416][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.419][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.422][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-03-15 16:04:55.423][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:04:55.424][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:04:55.426][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:55.426][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:55.427][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:55.432][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:55.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:55.433][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:55.434][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:55.437][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:04:55.439][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:04:55.440][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2025-03-15 16:04:55.441][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:04:55.442][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2025-03-15 16:04:55.444][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:55.445][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:55.446][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:55.451][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:55.452][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:55.453][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:55.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:55.455][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:55.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:55.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.458][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:55.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:55.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.461][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:55.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:55.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:55.464][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:55.465][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:55.466][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:55.471][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:55.471][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:55.472][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:55.473][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:55.474][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:55.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:55.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.477][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:55.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:55.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.480][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:55.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:55.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:55.483][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:55.484][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:55.485][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:55.497][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:55.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:55.499][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:55.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:55.501][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:55.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:55.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.504][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:55.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:55.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.507][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:55.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:55.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:55.511][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:04:55.512][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:55.513][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:55.513][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:55.518][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:55.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:55.520][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:55.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:55.522][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.525][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.528][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:55.528][private$selectFields]
biodb.TRACE[2025-03-15 16:04:55.529][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:55.530][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:55.530][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:55.531][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.532][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.533][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.534][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.535][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.536][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.537][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:55.538][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:55.538][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.539][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.541][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.542][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:55.543][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.546][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.549][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.552][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-03-15 16:04:55.553][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:55.554][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:55.554][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:55.560][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:55.561][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:55.562][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:55.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:55.563][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.566][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.569][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:55.570][private$selectFields]
biodb.TRACE[2025-03-15 16:04:55.571][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:55.571][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:55.572][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:55.573][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.574][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.576][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.576][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.577][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.579][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.579][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:55.580][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:55.581][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.582][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.583][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.584][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:55.585][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.588][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.592][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.595][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-03-15 16:04:55.596][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:55.597][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:55.597][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:55.602][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:55.603][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:55.604][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:55.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:55.606][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.609][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.612][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:55.613][private$selectFields]
biodb.TRACE[2025-03-15 16:04:55.613][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:04:55.614][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:04:55.615][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:55.616][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.617][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.618][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.619][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.620][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.621][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.622][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:55.623][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:04:55.623][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.624][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.626][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.626][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:04:55.627][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.631][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.634][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:55.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:55.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:55.637][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2025-03-15 16:04:55.638][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:04:55.639][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:04:55.660][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:55.661][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:55.662][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:55.666][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:55.667][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:55.668][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:55.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:55.671][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:04:55.673][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:04:55.674][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:04:55.676][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-03-15 16:04:56.045][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-03-15 16:04:56.427][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:04:56.429][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26eec570aadd234892b573eb0777bd78.content"
biodb.TRACE[2025-03-15 16:04:56.432][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26eec570aadd234892b573eb0777bd78.request"
biodb.DEBUG[2025-03-15 16:04:56.435][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:56.436][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:56.437][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:56.441][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:56.442][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:56.443][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:56.443][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:56.444][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:56.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:56.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:56.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:56.448][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:56.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:56.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:56.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:56.451][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:56.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:56.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:56.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:56.455][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:56.455][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:56.456][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:56.461][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:56.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:56.463][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:56.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:56.464][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:56.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:56.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:56.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:56.467][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:56.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:56.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:56.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:56.470][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:56.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:56.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:56.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:56.473][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:56.474][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:56.474][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:56.479][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:56.480][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:56.481][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:56.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:56.482][private$loadEntries] Creating entries from ids [1]: "17813".
biodb.DEBUG[2025-03-15 16:04:56.483][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:04:56.484][cch$loadFileContent] Trying to load 1 files from cache: [1]: "17813".
biodb.TRACE[2025-03-15 16:04:56.485][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:04:56.486][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:04:56.487][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:04:56.488][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:04:56.489][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:04:56.490][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:04:56.492][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:56.493][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:56.493][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:56.498][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:56.499][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:56.500][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:56.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:56.501][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=17813".
biodb.DEBUG[2025-03-15 16:04:56.504][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:04:56.504][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:04:56.506][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=17813".
biodb.TRACE[2025-03-15 16:04:56.861][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=17813).
biodb.DEBUG[2025-03-15 16:04:57.227][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:04:57.229][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62f7e1534a05c51cc1431eff021df0bd.content"
biodb.TRACE[2025-03-15 16:04:57.232][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62f7e1534a05c51cc1431eff021df0bd.request"
biodb.TRACE[2025-03-15 16:04:57.234][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/17813.xml"
biodb.DEBUG[2025-03-15 16:04:57.236][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:04:57.237][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:04:57.238][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:04:57.240][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:57.240][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:57.241][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:57.246][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:57.246][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:57.247][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:57.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:57.250][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:57.257][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:57.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:57.264][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:57.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:57.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:57.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:57.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:57.269][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:57.270][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:57.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:57.271][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:57.272][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:57.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:57.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:57.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:57.276][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:57.276][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:57.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:57.278][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:57.279][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:57.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:57.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:57.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:57.282][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:57.283][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:57.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:57.285][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:57.286][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:57.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:57.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:57.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:57.289][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:57.290][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:57.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:57.292][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:57.293][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:57.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:57.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:57.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:57.296][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:57.297][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:57.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:57.299][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:57.300][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:57.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:57.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:57.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:57.303][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:57.304][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:57.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:57.306][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:57.307][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:57.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:57.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:57.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:57.310][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:57.311][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:57.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:57.312][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:57.314][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:57.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:57.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:57.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:57.317][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:57.318][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:57.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:57.319][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:57.321][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:57.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:57.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:57.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:57.324][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:57.325][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:57.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:57.327][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:57.328][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:57.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:57.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:57.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:57.331][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:57.332][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:57.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:57.334][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:57.335][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:57.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:57.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:57.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:57.338][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:57.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:57.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:57.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:57.341][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:57.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:57.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:57.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:57.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:57.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:57.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:57.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:57.348][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:57.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:57.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:57.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:57.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:57.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:57.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:57.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:57.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:57.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:57.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:57.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:57.358][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:57.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:57.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:57.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:57.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:57.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:57.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:57.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:57.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:57.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:57.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:57.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:57.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:57.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:57.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:57.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:57.371][self$createEntryFromContent] Accession numbers: 17813.
biodb.TRACE[2025-03-15 16:04:57.372][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:57.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:57.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:57.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:57.376][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:57.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:57.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:57.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:57.379][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:57.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:57.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:57.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:57.382][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:57.383][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:57.383][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:57.389][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:57.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:57.390][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:57.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:57.392][private$loadEntries] Creating entries from ids [1]: "30109".
biodb.DEBUG[2025-03-15 16:04:57.393][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:04:57.394][cch$loadFileContent] Trying to load 1 files from cache: [1]: "30109".
biodb.TRACE[2025-03-15 16:04:57.396][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:04:57.396][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:04:57.397][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:04:57.398][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:04:57.399][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:04:57.400][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:04:57.402][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:57.403][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:57.404][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:57.408][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:57.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:57.410][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:57.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:57.412][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30109".
biodb.DEBUG[2025-03-15 16:04:57.414][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:04:57.415][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:04:57.416][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30109".
biodb.TRACE[2025-03-15 16:04:57.781][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30109).
biodb.DEBUG[2025-03-15 16:04:58.160][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:04:58.163][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8ed09c4c418a18a426e08dad5ae6a3f9.content"
biodb.TRACE[2025-03-15 16:04:58.166][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8ed09c4c418a18a426e08dad5ae6a3f9.request"
biodb.TRACE[2025-03-15 16:04:58.168][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/30109.xml"
biodb.DEBUG[2025-03-15 16:04:58.170][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:04:58.171][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:04:58.172][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:04:58.173][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:58.174][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:58.175][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:58.180][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:58.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:58.182][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:58.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:58.184][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:58.185][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:58.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:58.187][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:58.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:58.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:58.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:58.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:58.191][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:58.192][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:58.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:58.194][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:58.195][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:58.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:58.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:58.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:58.198][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:58.199][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:58.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:58.201][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:58.202][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:58.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:58.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:58.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:58.205][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:58.206][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:58.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:58.208][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:58.209][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:58.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:58.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:58.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:58.212][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:58.213][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:58.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:58.215][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:58.216][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:58.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:58.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:58.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:58.219][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:58.220][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:58.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:58.221][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:58.222][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:58.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:58.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:58.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:58.226][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:58.226][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:58.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:58.228][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:58.229][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:58.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:58.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:58.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:58.233][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:58.234][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:58.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:58.235][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:58.236][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:58.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:58.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:58.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:58.240][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:58.241][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:58.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:58.242][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:58.244][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:58.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:58.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:58.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:58.247][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:58.248][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:58.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:58.250][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:58.251][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:58.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:58.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:58.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:58.254][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:58.255][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:58.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:58.257][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:58.258][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:58.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:58.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:58.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:58.261][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:58.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:58.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:58.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:58.264][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:58.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:58.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:58.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:58.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:58.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:58.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:58.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:58.271][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:58.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:58.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:58.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:58.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:58.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:58.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:58.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:58.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:58.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:58.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:58.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:58.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:58.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:58.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:58.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:58.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:58.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:58.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:58.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:58.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:58.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:58.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:58.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:58.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:58.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:58.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:58.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:58.305][self$createEntryFromContent] Accession numbers: 30109.
biodb.TRACE[2025-03-15 16:04:58.306][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:58.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:58.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:58.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:58.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:58.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:58.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:58.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:58.312][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:58.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:58.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:58.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:58.316][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:58.316][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:58.317][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:58.322][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:58.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:58.324][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:58.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:58.325][private$loadEntries] Creating entries from ids [1]: "33275".
biodb.DEBUG[2025-03-15 16:04:58.326][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:04:58.328][cch$loadFileContent] Trying to load 1 files from cache: [1]: "33275".
biodb.TRACE[2025-03-15 16:04:58.329][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:04:58.330][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:04:58.331][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:04:58.332][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:04:58.332][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:04:58.333][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:04:58.335][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:58.336][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:58.337][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:58.341][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:58.342][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:58.343][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:58.344][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:58.345][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33275".
biodb.DEBUG[2025-03-15 16:04:58.348][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:04:58.348][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:04:58.349][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33275".
biodb.TRACE[2025-03-15 16:04:58.706][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33275).
biodb.DEBUG[2025-03-15 16:04:59.096][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:04:59.098][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7b5440dd739854267ce8eafb6ea36b1.content"
biodb.TRACE[2025-03-15 16:04:59.102][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7b5440dd739854267ce8eafb6ea36b1.request"
biodb.TRACE[2025-03-15 16:04:59.104][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/33275.xml"
biodb.DEBUG[2025-03-15 16:04:59.106][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:04:59.108][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:04:59.109][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:04:59.110][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:59.111][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:59.112][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:59.117][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:59.117][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:59.118][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:59.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:04:59.121][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:59.122][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:59.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:59.124][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:59.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:59.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:59.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:59.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:59.128][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:59.129][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:59.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:59.130][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:59.132][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:04:59.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:04:59.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:59.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:59.135][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:59.136][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:59.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:59.137][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:59.138][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:04:59.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:04:59.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:59.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:59.141][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:59.142][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:59.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:59.144][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:59.145][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:04:59.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:04:59.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:59.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:59.148][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:59.149][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:59.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:59.151][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:59.152][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:04:59.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:04:59.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:59.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:59.155][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:59.156][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:59.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:59.158][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:59.159][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:59.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:04:59.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:59.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:59.162][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:59.163][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:59.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:59.165][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:59.166][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:04:59.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:04:59.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:59.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:59.169][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:59.170][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:59.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:59.171][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:59.172][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:59.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:59.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:59.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:59.176][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:59.177][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:59.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:59.178][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:59.180][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:04:59.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:04:59.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:59.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:59.183][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:59.184][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:59.185][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:59.186][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:59.187][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:04:59.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:04:59.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:59.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:59.190][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:59.191][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:59.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:59.192][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:59.193][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:04:59.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:04:59.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:59.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:59.197][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:59.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:59.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:59.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:59.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:59.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:59.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:59.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:59.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:59.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:59.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:59.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:59.207][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:04:59.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:04:59.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:59.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:59.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:59.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:59.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:59.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:59.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:59.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:59.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:59.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:59.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:59.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:59.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:59.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:59.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:59.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:59.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:59.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:59.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:59.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:59.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:59.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:59.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:04:59.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:04:59.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:59.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:59.230][self$createEntryFromContent] Accession numbers: 33275.
biodb.TRACE[2025-03-15 16:04:59.231][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:59.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:59.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:59.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:59.234][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:59.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:59.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:59.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:04:59.237][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:59.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:04:59.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:04:59.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:04:59.240][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:59.241][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:59.241][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:59.247][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:59.248][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:59.249][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:59.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:59.250][private$loadEntries] Creating entries from ids [1]: "33277".
biodb.DEBUG[2025-03-15 16:04:59.251][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:04:59.252][cch$loadFileContent] Trying to load 1 files from cache: [1]: "33277".
biodb.TRACE[2025-03-15 16:04:59.253][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:04:59.254][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:04:59.255][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:04:59.256][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:04:59.257][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:04:59.257][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:04:59.260][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:04:59.261][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:04:59.262][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:04:59.267][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:04:59.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:04:59.269][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:04:59.269][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:04:59.271][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33277".
biodb.DEBUG[2025-03-15 16:04:59.273][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:04:59.274][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:04:59.275][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33277".
biodb.TRACE[2025-03-15 16:04:59.680][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33277).
biodb.DEBUG[2025-03-15 16:05:00.067][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:05:00.069][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9e077bb25f478950bf1d29f1e643c2aa.content"
biodb.TRACE[2025-03-15 16:05:00.072][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9e077bb25f478950bf1d29f1e643c2aa.request"
biodb.TRACE[2025-03-15 16:05:00.075][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/33277.xml"
biodb.DEBUG[2025-03-15 16:05:00.076][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:05:00.077][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:05:00.078][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:05:00.080][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:00.080][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:00.081][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:00.086][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:00.087][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:00.088][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:00.089][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:00.091][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:00.091][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:00.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:00.093][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:00.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:00.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:00.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:00.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:00.097][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:00.098][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:00.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:00.099][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:00.100][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:00.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:00.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:00.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:00.103][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:00.104][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:00.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:00.105][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:00.106][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:00.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:00.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:00.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:00.109][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:00.111][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:00.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:00.112][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:00.113][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:00.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:00.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:00.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:00.116][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:00.117][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:00.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:00.119][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:00.120][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:00.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:00.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:00.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:00.123][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:00.124][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:00.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:00.126][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:00.139][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:00.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:00.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:00.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:00.144][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:05:00.145][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:00.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:00.146][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:00.148][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:05:00.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:00.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:00.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:00.151][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:00.152][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:00.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:00.154][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:00.154][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:00.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:00.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:00.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:00.158][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:00.159][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:00.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:00.160][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:00.162][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:00.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:00.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:00.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:00.165][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:05:00.166][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:00.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:00.167][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:00.168][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:05:00.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:00.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:00.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:00.171][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:00.172][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:00.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:00.174][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:00.175][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:00.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:00.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:00.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:00.178][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:00.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:00.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:00.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:00.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:00.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:00.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:00.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:00.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:00.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:00.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:00.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:00.188][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:00.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:00.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:00.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:00.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:00.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:00.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:00.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:00.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:00.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:00.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:00.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:00.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:00.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:00.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:00.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:00.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:00.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:00.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:00.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:00.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:00.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:00.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:00.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:00.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:00.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:00.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:00.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:00.211][self$createEntryFromContent] Accession numbers: 33277.
biodb.TRACE[2025-03-15 16:05:00.212][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:00.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:00.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:00.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:00.215][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:00.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:00.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:00.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:00.218][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:00.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:00.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:00.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:00.221][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:00.222][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:00.223][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:00.228][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:00.229][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:00.230][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:00.230][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:00.231][private$loadEntries] Creating entries from ids [1]: "52421".
biodb.DEBUG[2025-03-15 16:05:00.232][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:05:00.234][cch$loadFileContent] Trying to load 1 files from cache: [1]: "52421".
biodb.TRACE[2025-03-15 16:05:00.235][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:05:00.236][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:05:00.237][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:05:00.238][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:05:00.239][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:05:00.239][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:05:00.242][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:00.242][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:00.243][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:00.248][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:00.249][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:00.250][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:00.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:00.252][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=52421".
biodb.DEBUG[2025-03-15 16:05:00.254][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:05:00.255][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:05:00.256][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=52421".
biodb.TRACE[2025-03-15 16:05:00.627][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=52421).
biodb.DEBUG[2025-03-15 16:05:01.030][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:05:01.032][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66d999f05cd47f00d9f023cd227b9481.content"
biodb.TRACE[2025-03-15 16:05:01.035][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66d999f05cd47f00d9f023cd227b9481.request"
biodb.TRACE[2025-03-15 16:05:01.037][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/52421.xml"
biodb.DEBUG[2025-03-15 16:05:01.039][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:05:01.040][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:05:01.041][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:05:01.043][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:01.044][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:01.044][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:01.050][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:01.051][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:01.052][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:01.053][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:01.055][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:01.056][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:01.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:01.057][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:01.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:01.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:01.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:01.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:01.062][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:01.063][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:01.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:01.064][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:01.066][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:01.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:01.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:01.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:01.069][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:01.070][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:01.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:01.072][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:01.073][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:01.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:01.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:01.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:01.076][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:01.077][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:01.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:01.078][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:01.079][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:01.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:01.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:01.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:01.083][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:01.084][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:01.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:01.085][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:01.086][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:01.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:01.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:01.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:01.090][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:01.091][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:01.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:01.092][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:01.093][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:05:01.094][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:01.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:01.096][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:01.097][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:05:01.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:01.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:01.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:01.100][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:01.101][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:01.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:01.102][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:01.104][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:01.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:01.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:01.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:01.107][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:01.108][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:01.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:01.110][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:01.111][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:01.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:01.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:01.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:01.114][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:05:01.115][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:01.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:01.117][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:01.118][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:05:01.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:01.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:01.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:01.122][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:01.123][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:01.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:01.124][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:01.125][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:01.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:01.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:01.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:01.129][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:01.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:01.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:01.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:01.132][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:01.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:01.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:01.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:01.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:01.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:01.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:01.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:01.139][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:01.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:01.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:01.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:01.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:01.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:01.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:01.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:01.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:01.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:01.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:01.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:01.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:01.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:01.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:01.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:01.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:01.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:01.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:01.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:01.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:01.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:01.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:01.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:01.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:01.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:01.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:01.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:01.162][self$createEntryFromContent] Accession numbers: 52421.
biodb.TRACE[2025-03-15 16:05:01.162][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:01.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:01.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:01.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:01.166][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:01.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:01.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:01.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:01.169][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:01.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:01.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:01.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:01.172][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:01.173][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:01.174][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:01.179][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:01.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:01.181][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:01.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:01.182][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:01.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:01.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:01.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:01.185][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:01.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:01.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:01.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:01.189][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:01.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:01.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:01.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:01.192][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:05:01.193][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:01.194][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:01.195][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:01.209][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:01.210][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:01.211][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:01.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:01.213][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:01.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:01.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:01.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:01.216][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:01.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:01.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:01.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:01.220][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:01.220][private$selectFields]
biodb.TRACE[2025-03-15 16:05:01.221][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:01.222][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:01.223][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:01.224][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:01.225][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:01.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:01.226][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:01.227][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:01.228][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:01.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:01.229][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:01.230][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:01.231][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:01.232][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:01.233][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:01.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:01.234][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:01.235][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:05:01.236][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:01.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:01.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:01.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:01.239][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:01.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:01.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:01.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:01.242][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:01.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:01.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:01.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:01.245][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-03-15 16:05:01.246][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:01.247][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:01.248][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:01.253][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:01.254][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:01.254][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:01.255][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:01.256][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:01.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:01.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:01.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:01.259][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:01.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:01.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:01.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:01.263][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:01.263][private$selectFields]
biodb.TRACE[2025-03-15 16:05:01.264][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:01.265][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:01.266][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:01.266][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:01.267][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:01.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:01.269][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:01.270][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:01.270][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:01.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:01.272][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:01.272][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:01.273][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:01.274][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:01.275][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:01.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:01.277][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:01.277][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:05:01.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:01.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:01.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:01.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:01.281][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:01.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:01.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:01.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:01.285][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:01.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:01.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:01.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:01.288][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-03-15 16:05:01.289][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:01.290][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:01.290][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:01.295][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:01.296][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:01.296][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:01.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:01.298][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:01.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:01.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:01.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:01.301][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:01.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:01.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:01.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:01.304][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:01.305][private$selectFields]
biodb.TRACE[2025-03-15 16:05:01.306][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:01.306][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:01.307][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:01.308][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:01.309][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:01.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:01.310][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:01.311][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:01.312][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:01.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:01.314][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:01.314][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:01.315][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:01.316][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:01.317][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:01.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:01.318][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:01.319][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:05:01.320][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:01.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:01.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:01.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:01.323][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:01.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:01.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:01.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:01.327][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:01.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:01.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:01.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:01.330][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-03-15 16:05:01.331][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:05:01.332][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:05:01.333][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:01.334][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:01.335][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:01.340][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:01.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:01.341][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:01.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:01.344][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:05:01.347][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:05:01.348][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:05:01.350][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-03-15 16:05:01.725][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-03-15 16:05:02.416][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:05:02.418][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/20c224089a82bbffabd2e7dbc67cfae3.content"
biodb.TRACE[2025-03-15 16:05:02.422][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/20c224089a82bbffabd2e7dbc67cfae3.request"
biodb.DEBUG[2025-03-15 16:05:02.427][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:02.428][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:02.429][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:02.434][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:02.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:02.435][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:02.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:02.437][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:02.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:02.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:02.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:02.440][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:02.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:02.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:02.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:02.444][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:02.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:02.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:02.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:02.447][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:02.448][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:02.449][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:02.454][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:02.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:02.456][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:02.456][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:02.457][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:02.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:02.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:02.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:02.461][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:02.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:02.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:02.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:02.464][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:02.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:02.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:02.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:02.467][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:02.468][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:02.469][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:02.474][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:02.475][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:02.475][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:02.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:02.477][private$loadEntries] Creating entries from ids [1]: "65567".
biodb.DEBUG[2025-03-15 16:05:02.478][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:05:02.479][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65567".
biodb.TRACE[2025-03-15 16:05:02.481][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:05:02.482][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:05:02.482][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:05:02.483][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:05:02.484][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:05:02.485][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:05:02.487][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:02.488][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:02.489][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:02.494][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:02.495][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:02.496][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:02.496][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:02.498][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65567".
biodb.DEBUG[2025-03-15 16:05:02.500][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:05:02.501][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:05:02.502][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65567".
biodb.TRACE[2025-03-15 16:05:02.867][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65567).
biodb.DEBUG[2025-03-15 16:05:03.233][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:05:03.234][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7f0d7a30f02eb1e897d8c17a3958aa76.content"
biodb.TRACE[2025-03-15 16:05:03.237][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7f0d7a30f02eb1e897d8c17a3958aa76.request"
biodb.TRACE[2025-03-15 16:05:03.239][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65567.xml"
biodb.DEBUG[2025-03-15 16:05:03.241][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:05:03.242][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:05:03.243][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:05:03.244][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:03.245][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:03.245][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:03.250][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:03.251][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:03.251][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:03.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:03.254][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:03.255][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:03.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:03.256][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:03.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:03.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:03.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:03.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:03.260][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:03.261][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:03.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:03.262][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:03.263][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:03.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:03.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:03.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:03.266][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:03.267][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:03.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:03.268][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:03.269][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:03.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:03.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:03.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:03.272][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:03.273][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:03.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:03.274][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:03.275][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:03.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:03.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:03.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:03.278][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:03.279][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:03.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:03.280][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:03.281][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:03.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:03.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:03.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:03.297][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:03.297][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:03.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:03.299][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:03.300][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:05:03.301][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:03.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:03.302][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:03.303][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:05:03.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:03.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:03.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:03.306][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:03.307][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:03.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:03.308][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:03.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:03.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:03.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:03.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:03.312][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:03.313][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:03.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:03.314][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:03.315][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:03.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:03.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:03.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:03.318][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:05:03.319][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:03.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:03.320][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:03.321][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:05:03.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:03.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:03.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:03.324][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:03.325][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:03.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:03.326][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:03.327][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:03.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:03.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:03.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:03.330][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:03.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:03.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:03.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:03.333][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:03.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:03.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:03.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:03.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:03.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:03.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:03.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:03.338][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:03.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:03.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:03.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:03.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:03.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:03.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:03.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:03.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:03.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:03.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:03.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:03.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:03.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:03.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:03.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:03.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:03.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:03.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:03.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:03.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:03.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:03.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:03.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:03.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:03.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:03.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:03.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:03.360][self$createEntryFromContent] Accession numbers: 65567.
biodb.TRACE[2025-03-15 16:05:03.361][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:03.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:03.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:03.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:03.364][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:03.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:03.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:03.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:03.367][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:03.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:03.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:03.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:03.370][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:03.371][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:03.371][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:03.376][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:03.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:03.378][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:03.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:03.379][private$loadEntries] Creating entries from ids [1]: "65576".
biodb.DEBUG[2025-03-15 16:05:03.380][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:05:03.382][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65576".
biodb.TRACE[2025-03-15 16:05:03.383][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:05:03.383][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:05:03.384][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:05:03.385][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:05:03.386][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:05:03.387][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:05:03.389][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:03.390][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:03.390][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:03.395][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:03.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:03.396][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:03.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:03.398][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65576".
biodb.DEBUG[2025-03-15 16:05:03.401][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:05:03.401][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:05:03.402][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65576".
biodb.TRACE[2025-03-15 16:05:03.756][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65576).
biodb.DEBUG[2025-03-15 16:05:04.126][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:05:04.128][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/df387492c1d7c1e81f35830307d5d903.content"
biodb.TRACE[2025-03-15 16:05:04.131][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/df387492c1d7c1e81f35830307d5d903.request"
biodb.TRACE[2025-03-15 16:05:04.133][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65576.xml"
biodb.DEBUG[2025-03-15 16:05:04.135][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:05:04.136][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:05:04.137][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:05:04.138][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:04.139][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:04.140][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:04.145][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:04.146][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:04.147][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:04.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:04.149][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:04.150][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:04.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:04.152][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:04.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:04.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:04.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:04.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:04.156][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:04.157][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:04.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:04.159][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:04.160][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:04.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:04.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:04.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:04.163][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:04.164][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:04.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:04.165][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:04.166][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:04.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:04.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:04.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:04.169][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:04.170][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:04.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:04.172][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:04.172][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:04.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:04.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:04.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:04.176][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:04.177][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:04.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:04.179][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:04.180][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:04.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:04.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:04.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:04.183][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:04.184][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:04.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:04.185][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:04.186][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:05:04.187][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:04.188][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:04.189][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:04.190][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:05:04.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:04.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:04.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:04.193][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:04.194][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:04.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:04.196][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:04.197][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:04.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:04.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:04.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:04.200][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:04.201][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:04.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:04.202][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:04.204][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:04.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:04.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:04.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:04.207][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:05:04.208][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:04.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:04.209][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:04.211][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:05:04.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:04.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:04.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:04.214][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:04.215][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:04.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:04.217][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:04.218][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:04.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:04.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:04.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:04.221][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:04.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:04.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:04.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:04.225][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:04.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:04.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:04.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:04.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:04.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:04.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:04.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:04.231][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:04.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:04.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:04.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:04.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:04.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:04.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:04.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:04.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:04.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:04.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:04.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:04.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:04.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:04.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:04.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:04.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:04.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:04.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:04.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:04.249][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:04.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:04.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:04.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:04.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:04.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:04.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:04.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:04.256][self$createEntryFromContent] Accession numbers: 65576.
biodb.TRACE[2025-03-15 16:05:04.257][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:04.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:04.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:04.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:04.260][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:04.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:04.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:04.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:04.264][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:04.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:04.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:04.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:04.267][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:04.268][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:04.269][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:04.274][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:04.274][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:04.275][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:04.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:04.277][private$loadEntries] Creating entries from ids [1]: "66352".
biodb.DEBUG[2025-03-15 16:05:04.278][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:05:04.279][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66352".
biodb.TRACE[2025-03-15 16:05:04.280][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:05:04.281][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:05:04.282][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:05:04.283][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:05:04.284][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:05:04.285][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:05:04.287][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:04.287][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:04.288][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:04.302][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:04.304][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:04.304][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:04.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:04.306][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66352".
biodb.DEBUG[2025-03-15 16:05:04.308][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:05:04.309][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:05:04.311][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66352".
biodb.TRACE[2025-03-15 16:05:04.672][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66352).
biodb.DEBUG[2025-03-15 16:05:05.038][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:05:05.040][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/45b0333aa11c1e7eb4af7d2d82f453d6.content"
biodb.TRACE[2025-03-15 16:05:05.043][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/45b0333aa11c1e7eb4af7d2d82f453d6.request"
biodb.TRACE[2025-03-15 16:05:05.046][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66352.xml"
biodb.DEBUG[2025-03-15 16:05:05.048][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:05:05.049][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:05:05.050][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:05:05.051][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:05.052][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:05.053][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:05.058][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:05.059][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:05.060][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:05.061][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:05.063][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:05.063][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:05.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:05.065][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:05.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:05.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:05.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:05.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:05.069][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:05.070][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:05.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:05.071][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:05.072][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:05.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:05.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:05.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:05.075][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:05.076][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:05.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:05.078][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:05.079][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:05.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:05.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:05.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:05.082][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:05.083][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:05.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:05.085][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:05.086][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:05.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:05.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:05.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:05.089][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:05.090][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:05.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:05.091][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:05.092][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:05.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:05.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:05.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:05.096][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:05.097][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:05.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:05.098][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:05.099][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:05:05.100][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:05.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:05.102][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:05.103][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:05:05.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:05.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:05.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:05.106][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:05.107][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:05.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:05.109][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:05.110][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:05.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:05.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:05.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:05.113][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:05.114][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:05.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:05.116][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:05.117][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:05.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:05.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:05.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:05.120][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:05:05.122][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:05.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:05.124][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:05.125][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:05:05.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:05.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:05.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:05.128][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:05.129][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:05.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:05.131][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:05.132][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:05.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:05.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:05.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:05.136][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:05.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:05.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:05.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:05.139][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:05.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:05.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:05.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:05.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:05.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:05.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:05.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:05.145][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:05.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:05.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:05.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:05.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:05.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:05.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:05.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:05.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:05.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:05.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:05.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:05.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:05.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:05.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:05.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:05.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:05.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:05.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:05.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:05.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:05.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:05.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:05.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:05.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:05.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:05.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:05.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:05.168][self$createEntryFromContent] Accession numbers: 66352.
biodb.TRACE[2025-03-15 16:05:05.169][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:05.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:05.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:05.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:05.172][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:05.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:05.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:05.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:05.175][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:05.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:05.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:05.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:05.178][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:05.179][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:05.180][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:05.185][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:05.186][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:05.186][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:05.187][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:05.188][private$loadEntries] Creating entries from ids [1]: "67567".
biodb.DEBUG[2025-03-15 16:05:05.189][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:05:05.190][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67567".
biodb.TRACE[2025-03-15 16:05:05.191][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:05:05.192][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:05:05.193][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:05:05.194][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:05:05.195][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:05:05.196][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:05:05.198][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:05.199][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:05.200][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:05.205][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:05.205][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:05.206][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:05.207][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:05.208][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67567".
biodb.DEBUG[2025-03-15 16:05:05.210][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:05:05.211][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:05:05.212][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67567".
biodb.TRACE[2025-03-15 16:05:05.571][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67567).
biodb.DEBUG[2025-03-15 16:05:05.929][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:05:05.931][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef82f494f4fdd41c2bb93aa0869ad73e.content"
biodb.TRACE[2025-03-15 16:05:05.934][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef82f494f4fdd41c2bb93aa0869ad73e.request"
biodb.TRACE[2025-03-15 16:05:05.936][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67567.xml"
biodb.DEBUG[2025-03-15 16:05:05.938][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:05:05.939][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:05:05.940][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:05:05.941][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:05.942][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:05.943][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:05.948][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:05.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:05.950][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:05.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:05.952][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:05.953][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:05.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:05.955][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:05.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:05.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:05.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:05.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:05.959][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:05.960][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:05.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:05.961][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:05.962][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:05.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:05.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:05.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:05.966][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:05.966][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:05.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:05.968][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:05.969][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:05.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:05.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:05.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:05.972][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:05.973][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:05.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:05.975][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:05.976][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:05.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:05.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:05.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:05.979][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:05.980][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:05.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:05.982][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:05.983][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:05.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:05.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:05.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:05.986][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:05.987][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:05.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:05.988][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:05.990][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:05:05.990][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:05.991][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:05.992][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:05.993][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:05:05.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:05.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:05.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:05.996][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:05.997][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:05.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:05.999][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:06.000][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:06.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:06.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:06.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:06.003][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:06.004][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:06.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:06.005][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:06.007][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:06.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:06.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:06.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:06.010][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:05:06.011][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:06.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:06.012][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:06.013][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:05:06.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:06.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:06.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:06.016][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:06.017][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:06.018][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:06.019][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:06.020][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:06.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:06.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:06.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:06.023][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:06.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:06.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:06.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:06.026][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:06.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:06.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:06.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:06.042][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:06.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:06.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:06.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:06.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:06.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:06.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:06.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:06.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:06.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:06.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:06.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:06.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:06.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:06.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:06.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:06.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:06.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:06.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:06.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:06.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:06.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:06.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:06.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:06.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:06.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:06.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:06.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:06.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:06.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:06.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:06.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:06.070][self$createEntryFromContent] Accession numbers: 67567.
biodb.TRACE[2025-03-15 16:05:06.071][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:06.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:06.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:06.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:06.074][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:06.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:06.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:06.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:06.077][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:06.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:06.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:06.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:06.080][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:06.081][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:06.082][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:06.087][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:06.088][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:06.088][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:06.089][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:06.090][private$loadEntries] Creating entries from ids [1]: "67693".
biodb.DEBUG[2025-03-15 16:05:06.091][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:05:06.092][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67693".
biodb.TRACE[2025-03-15 16:05:06.093][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:05:06.094][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:05:06.095][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:05:06.096][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:05:06.096][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:05:06.097][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:05:06.099][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:06.100][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:06.101][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:06.106][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:06.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:06.108][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:06.109][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:06.110][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67693".
biodb.DEBUG[2025-03-15 16:05:06.112][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:05:06.113][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:05:06.114][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67693".
biodb.TRACE[2025-03-15 16:05:06.464][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67693).
biodb.DEBUG[2025-03-15 16:05:06.831][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:05:06.832][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/007181120197262f6a39eff57d7aa092.content"
biodb.TRACE[2025-03-15 16:05:06.835][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/007181120197262f6a39eff57d7aa092.request"
biodb.TRACE[2025-03-15 16:05:06.838][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67693.xml"
biodb.DEBUG[2025-03-15 16:05:06.840][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:05:06.841][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:05:06.842][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:05:06.843][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:06.844][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:06.845][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:06.850][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:06.851][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:06.851][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:06.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:06.854][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:06.855][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:06.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:06.857][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:06.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:06.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:06.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:06.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:06.862][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:06.863][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:06.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:06.865][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:06.866][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:06.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:06.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:06.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:06.869][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:06.870][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:06.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:06.871][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:06.872][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:06.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:06.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:06.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:06.876][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:06.876][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:06.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:06.878][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:06.879][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:06.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:06.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:06.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:06.882][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:06.883][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:06.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:06.885][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:06.886][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:06.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:06.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:06.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:06.889][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:06.890][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:06.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:06.891][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:06.892][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:05:06.893][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:06.894][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:06.895][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:06.896][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:05:06.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:06.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:06.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:06.899][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:06.900][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:06.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:06.901][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:06.902][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:06.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:06.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:06.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:06.905][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:06.906][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:06.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:06.908][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:06.909][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:06.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:06.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:06.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:06.912][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:05:06.913][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:06.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:06.914][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:06.916][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:05:06.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:06.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:06.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:06.919][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:06.920][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:06.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:06.921][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:06.922][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:06.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:06.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:06.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:06.926][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:06.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:06.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:06.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:06.929][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:06.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:06.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:06.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:06.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:06.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:06.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:06.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:06.935][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:06.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:06.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:06.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:06.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:06.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:06.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:06.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:06.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:06.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:06.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:06.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:06.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:06.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:06.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:06.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:06.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:06.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:06.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:06.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:06.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:06.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:06.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:06.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:06.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:06.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:06.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:06.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:06.957][self$createEntryFromContent] Accession numbers: 67693.
biodb.TRACE[2025-03-15 16:05:06.958][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:06.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:06.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:06.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:06.961][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:06.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:06.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:06.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:06.964][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:06.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:06.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:06.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:06.967][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:06.968][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:06.969][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:06.974][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:06.975][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:06.976][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:06.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:06.977][private$loadEntries] Creating entries from ids [1]: "67700".
biodb.DEBUG[2025-03-15 16:05:06.978][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:05:06.979][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67700".
biodb.TRACE[2025-03-15 16:05:06.980][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:05:06.981][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:05:06.982][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:05:06.983][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:05:06.984][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:05:06.985][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:05:06.987][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:06.988][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:06.989][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:06.994][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:06.994][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:06.995][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:06.996][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:06.997][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67700".
biodb.DEBUG[2025-03-15 16:05:06.999][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:05:07.000][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:05:07.001][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67700".
biodb.TRACE[2025-03-15 16:05:07.365][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67700).
biodb.DEBUG[2025-03-15 16:05:07.741][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:05:07.743][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e41afa9432b74fa2b22a0c53e84c091a.content"
biodb.TRACE[2025-03-15 16:05:07.746][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e41afa9432b74fa2b22a0c53e84c091a.request"
biodb.TRACE[2025-03-15 16:05:07.748][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67700.xml"
biodb.DEBUG[2025-03-15 16:05:07.750][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:05:07.751][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:05:07.752][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:05:07.753][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:07.754][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:07.755][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:07.760][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:07.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:07.762][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:07.762][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:07.764][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:07.765][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:07.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:07.767][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:07.768][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:07.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:07.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:07.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:07.771][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:07.772][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:07.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:07.774][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:07.775][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:07.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:07.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:07.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:07.790][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:07.791][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:07.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:07.793][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:07.794][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:07.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:07.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:07.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:07.797][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:07.798][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:07.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:07.800][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:07.801][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:07.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:07.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:07.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:07.804][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:07.805][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:07.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:07.806][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:07.807][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:07.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:07.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:07.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:07.811][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:07.811][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:07.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:07.813][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:07.814][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:05:07.815][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:07.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:07.816][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:07.817][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:05:07.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:07.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:07.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:07.820][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:07.821][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:07.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:07.823][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:07.824][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:07.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:07.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:07.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:07.827][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:07.828][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:07.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:07.830][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:07.831][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:07.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:07.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:07.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:07.834][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:05:07.835][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:07.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:07.837][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:07.838][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:05:07.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:07.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:07.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:07.841][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:07.842][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:07.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:07.844][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:07.845][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:07.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:07.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:07.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:07.849][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:07.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:07.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:07.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:07.852][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:07.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:07.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:07.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:07.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:07.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:07.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:07.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:07.858][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:07.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:07.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:07.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:07.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:07.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:07.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:07.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:07.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:07.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:07.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:07.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:07.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:07.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:07.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:07.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:07.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:07.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:07.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:07.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:07.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:07.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:07.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:07.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:07.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:07.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:07.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:07.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:07.881][self$createEntryFromContent] Accession numbers: 67700.
biodb.TRACE[2025-03-15 16:05:07.882][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:07.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:07.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:07.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:07.885][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:07.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:07.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:07.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:07.889][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:07.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:07.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:07.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:07.892][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:07.892][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:07.893][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:07.898][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:07.899][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:07.900][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:07.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:07.902][private$loadEntries] Creating entries from ids [1]: "67701".
biodb.DEBUG[2025-03-15 16:05:07.902][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:05:07.904][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67701".
biodb.TRACE[2025-03-15 16:05:07.905][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:05:07.906][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:05:07.906][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:05:07.907][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:05:07.908][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:05:07.909][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:05:07.911][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:07.912][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:07.912][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:07.918][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:07.918][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:07.919][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:07.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:07.921][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67701".
biodb.DEBUG[2025-03-15 16:05:07.924][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:05:07.925][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:05:07.926][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67701".
biodb.TRACE[2025-03-15 16:05:08.281][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67701).
biodb.DEBUG[2025-03-15 16:05:08.640][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:05:08.642][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ca9443fe11bfb8fe207e2797d18dbba3.content"
biodb.TRACE[2025-03-15 16:05:08.645][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ca9443fe11bfb8fe207e2797d18dbba3.request"
biodb.TRACE[2025-03-15 16:05:08.648][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67701.xml"
biodb.DEBUG[2025-03-15 16:05:08.650][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:05:08.651][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:05:08.652][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:05:08.653][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:08.654][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:08.655][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:08.660][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:08.661][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:08.661][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:08.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:08.664][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:08.665][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:08.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:08.667][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:08.668][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:08.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:08.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:08.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:08.672][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:08.672][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:08.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:08.674][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:08.675][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:08.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:08.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:08.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:08.678][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:08.679][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:08.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:08.681][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:08.682][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:08.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:08.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:08.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:08.685][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:08.686][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:08.687][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:08.688][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:08.689][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:08.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:08.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:08.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:08.692][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:08.693][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:08.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:08.695][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:08.696][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:08.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:08.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:08.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:08.699][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:08.700][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:08.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:08.701][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:08.702][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:05:08.703][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:08.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:08.705][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:08.706][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:05:08.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:08.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:08.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:08.710][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:08.710][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:08.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:08.712][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:08.713][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:08.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:08.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:08.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:08.717][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:08.718][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:08.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:08.719][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:08.720][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:08.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:08.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:08.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:08.724][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:05:08.724][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:08.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:08.726][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:08.727][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:05:08.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:08.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:08.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:08.730][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:08.731][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:08.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:08.733][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:08.734][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:08.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:08.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:08.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:08.738][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:08.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:08.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:08.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:08.741][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:08.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:08.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:08.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:08.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:08.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:08.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:08.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:08.748][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:08.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:08.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:08.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:08.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:08.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:08.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:08.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:08.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:08.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:08.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:08.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:08.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:08.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:08.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:08.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:08.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:08.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:08.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:08.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:08.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:08.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:08.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:08.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:08.768][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:08.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:08.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:08.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:08.771][self$createEntryFromContent] Accession numbers: 67701.
biodb.TRACE[2025-03-15 16:05:08.772][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:08.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:08.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:08.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:08.775][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:08.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:08.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:08.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:08.778][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:08.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:08.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:08.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:08.781][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:08.782][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:08.783][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:08.797][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:08.798][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:08.799][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:08.800][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:08.801][private$loadEntries] Creating entries from ids [1]: "67705".
biodb.DEBUG[2025-03-15 16:05:08.802][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:05:08.803][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67705".
biodb.TRACE[2025-03-15 16:05:08.804][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:05:08.805][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:05:08.806][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:05:08.807][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:05:08.808][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:05:08.808][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:05:08.811][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:08.811][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:08.812][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:08.817][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:08.818][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:08.819][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:08.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:08.820][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67705".
biodb.DEBUG[2025-03-15 16:05:08.822][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:05:08.823][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:05:08.824][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67705".
biodb.TRACE[2025-03-15 16:05:09.189][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67705).
biodb.DEBUG[2025-03-15 16:05:09.554][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:05:09.555][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/19583a5be2f48ffe4ea86ed642cbc7df.content"
biodb.TRACE[2025-03-15 16:05:09.558][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/19583a5be2f48ffe4ea86ed642cbc7df.request"
biodb.TRACE[2025-03-15 16:05:09.561][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67705.xml"
biodb.DEBUG[2025-03-15 16:05:09.562][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:05:09.563][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:05:09.564][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:05:09.566][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:09.566][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:09.567][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:09.572][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:09.572][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:09.573][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:09.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:09.576][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:09.577][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:09.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:09.578][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:09.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:09.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:09.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:09.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:09.582][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:09.583][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:09.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:09.585][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:09.586][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:09.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:09.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:09.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:09.589][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:09.590][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:09.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:09.592][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:09.593][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:09.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:09.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:09.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:09.597][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:09.598][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:09.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:09.599][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:09.600][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:09.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:09.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:09.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:09.604][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:09.605][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:09.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:09.606][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:09.607][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:09.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:09.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:09.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:09.610][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:09.611][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:09.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:09.613][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:09.614][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:05:09.615][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:09.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:09.616][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:09.617][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:05:09.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:09.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:09.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:09.620][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:09.621][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:09.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:09.623][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:09.624][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:09.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:09.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:09.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:09.627][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:09.628][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:09.628][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:09.629][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:09.630][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:09.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:09.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:09.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:09.633][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:05:09.634][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:09.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:09.635][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:09.637][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:05:09.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:09.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:09.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:09.640][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:09.641][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:09.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:09.642][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:09.643][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:09.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:09.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:09.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:09.646][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:09.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:09.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:09.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:09.649][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:09.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:09.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:09.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:09.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:09.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:09.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:09.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:09.655][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:09.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:09.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:09.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:09.659][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:09.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:09.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:09.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:09.662][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:09.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:09.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:09.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:09.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:09.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:09.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:09.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:09.668][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:09.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:09.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:09.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:09.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:09.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:09.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:09.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:09.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:09.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:09.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:09.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:09.678][self$createEntryFromContent] Accession numbers: 67705.
biodb.TRACE[2025-03-15 16:05:09.679][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:09.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:09.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:09.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:09.682][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:09.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:09.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:09.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:09.685][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:09.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:09.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:09.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:09.689][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:09.689][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:09.690][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:09.695][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:09.696][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:09.696][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:09.697][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:09.698][private$loadEntries] Creating entries from ids [1]: "75265".
biodb.DEBUG[2025-03-15 16:05:09.699][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:05:09.700][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75265".
biodb.TRACE[2025-03-15 16:05:09.701][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:05:09.702][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:05:09.702][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:05:09.703][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:05:09.704][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:05:09.705][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:05:09.707][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:09.708][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:09.708][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:09.713][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:09.714][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:09.714][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:09.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:09.716][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75265".
biodb.DEBUG[2025-03-15 16:05:09.718][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:05:09.719][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:05:09.720][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75265".
biodb.TRACE[2025-03-15 16:05:10.083][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75265).
biodb.DEBUG[2025-03-15 16:05:10.443][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:05:10.445][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d89a3a12f8b9f5e8203e72f55b0016ed.content"
biodb.TRACE[2025-03-15 16:05:10.448][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d89a3a12f8b9f5e8203e72f55b0016ed.request"
biodb.TRACE[2025-03-15 16:05:10.451][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75265.xml"
biodb.DEBUG[2025-03-15 16:05:10.452][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:05:10.454][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:05:10.455][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:05:10.456][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:10.457][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:10.458][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:10.463][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:10.464][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:10.464][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:10.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:10.467][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:10.468][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:10.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:10.469][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:10.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:10.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:10.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:10.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:10.474][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:10.474][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:10.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:10.476][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:10.477][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:10.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:10.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:10.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:10.480][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:10.481][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:10.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:10.482][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:10.483][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:10.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:10.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:10.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:10.487][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:10.488][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:10.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:10.489][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:10.490][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:10.491][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:10.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:10.493][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:10.494][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:10.495][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:10.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:10.496][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:10.497][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:05:10.498][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:10.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:10.499][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:10.500][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:05:10.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:10.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:10.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:10.503][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:10.504][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:10.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:10.506][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:10.507][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:10.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:10.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:10.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:10.510][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:10.511][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:10.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:10.513][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:10.514][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:10.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:10.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:10.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:10.517][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:05:10.518][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:10.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:10.520][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:10.533][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:05:10.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:10.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:10.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:10.537][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:10.538][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:10.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:10.540][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:10.541][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:10.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:10.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:10.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:10.545][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:10.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:10.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:10.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:10.548][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:10.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:10.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:10.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:10.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:10.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:10.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:10.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:10.555][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:10.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:10.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:10.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:10.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:10.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:10.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:10.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:10.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:10.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:10.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:10.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:10.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:10.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:10.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:10.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:10.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:10.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:10.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:10.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:10.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:10.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:10.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:10.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:10.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:10.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:10.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:10.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:10.578][self$createEntryFromContent] Accession numbers: 75265.
biodb.TRACE[2025-03-15 16:05:10.579][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:10.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:10.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:10.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:10.583][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:10.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:10.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:10.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:10.586][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:10.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:10.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:10.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:10.589][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:10.590][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:10.591][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:10.595][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:10.596][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:10.597][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:10.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:10.599][private$loadEntries] Creating entries from ids [1]: "77370".
biodb.DEBUG[2025-03-15 16:05:10.600][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:05:10.601][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77370".
biodb.TRACE[2025-03-15 16:05:10.602][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:05:10.618][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:05:10.619][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:05:10.620][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:05:10.621][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:05:10.622][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:05:10.624][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:10.625][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:10.625][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:10.630][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:10.631][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:10.632][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:10.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:10.638][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77370".
biodb.DEBUG[2025-03-15 16:05:10.640][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:05:10.641][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:05:10.642][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77370".
biodb.TRACE[2025-03-15 16:05:11.006][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77370).
biodb.DEBUG[2025-03-15 16:05:11.362][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:05:11.364][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c00fcc12163fc12434466e6319d4b9a8.content"
biodb.TRACE[2025-03-15 16:05:11.368][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c00fcc12163fc12434466e6319d4b9a8.request"
biodb.TRACE[2025-03-15 16:05:11.370][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77370.xml"
biodb.DEBUG[2025-03-15 16:05:11.371][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:05:11.373][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:05:11.374][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:05:11.375][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:11.376][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:11.377][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:11.381][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:11.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:11.383][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:11.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:11.386][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:11.387][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:11.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:11.388][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:11.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:11.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:11.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:11.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:11.392][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:11.393][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:11.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:11.395][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:11.396][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:11.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:11.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:11.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:11.399][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:11.400][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:11.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:11.401][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:11.402][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:11.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:11.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:11.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:11.406][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:11.406][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:11.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:11.408][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:11.409][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:11.410][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:11.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:11.411][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:11.412][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:11.413][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:11.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:11.414][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:11.415][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:05:11.416][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:11.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:11.418][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:11.419][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:05:11.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:11.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:11.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:11.422][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:11.423][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:11.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:11.424][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:11.425][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:11.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:11.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:11.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:11.428][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:11.429][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:11.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:11.431][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:11.432][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:11.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:11.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:11.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:11.435][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:05:11.436][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:11.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:11.438][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:11.439][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:05:11.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:11.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:11.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:11.442][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:11.443][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:11.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:11.444][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:11.445][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:11.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:11.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:11.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:11.448][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:11.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:11.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:11.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:11.452][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:11.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:11.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:11.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:11.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:11.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:11.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:11.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:11.458][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:11.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:11.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:11.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:11.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:11.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:11.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:11.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:11.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:11.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:11.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:11.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:11.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:11.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:11.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:11.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:11.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:11.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:11.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:11.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:11.474][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:11.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:11.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:11.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:11.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:11.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:11.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:11.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:11.480][self$createEntryFromContent] Accession numbers: 77370.
biodb.TRACE[2025-03-15 16:05:11.481][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:11.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:11.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:11.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:11.484][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:11.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:11.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:11.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:11.488][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:11.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:11.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:11.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:11.491][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:11.491][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:11.492][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:11.497][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:11.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:11.499][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:11.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:11.501][private$loadEntries] Creating entries from ids [1]: "79074".
biodb.DEBUG[2025-03-15 16:05:11.502][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:05:11.503][cch$loadFileContent] Trying to load 1 files from cache: [1]: "79074".
biodb.TRACE[2025-03-15 16:05:11.504][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:05:11.505][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:05:11.506][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:05:11.506][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:05:11.507][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:05:11.508][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:05:11.511][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:11.511][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:11.512][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:11.517][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:11.518][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:11.519][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:11.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:11.520][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79074".
biodb.DEBUG[2025-03-15 16:05:11.523][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:05:11.524][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:05:11.525][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79074".
biodb.TRACE[2025-03-15 16:05:11.879][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79074).
biodb.DEBUG[2025-03-15 16:05:12.251][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:05:12.253][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9d103521a9057f87b1d7f6dac467847d.content"
biodb.TRACE[2025-03-15 16:05:12.256][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9d103521a9057f87b1d7f6dac467847d.request"
biodb.TRACE[2025-03-15 16:05:12.258][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79074.xml"
biodb.DEBUG[2025-03-15 16:05:12.260][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:05:12.261][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:05:12.262][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:05:12.264][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:12.264][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:12.265][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:12.270][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:12.271][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:12.272][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:12.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:12.275][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:12.276][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:12.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:12.277][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:12.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:12.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:12.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:12.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:12.295][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:12.296][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:12.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:12.297][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:12.298][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:12.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:12.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:12.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:12.302][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:12.303][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:12.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:12.305][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:12.306][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:12.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:12.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:12.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:12.309][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:12.310][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:12.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:12.311][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:12.312][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:12.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:12.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:12.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:12.316][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:12.316][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:12.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:12.318][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:12.319][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:12.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:12.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:12.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:12.322][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:12.324][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:12.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:12.325][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:12.326][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:05:12.327][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:12.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:12.329][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:12.330][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:05:12.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:12.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:12.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:12.333][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:12.334][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:12.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:12.335][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:12.336][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:12.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:12.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:12.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:12.340][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:12.340][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:12.341][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:12.342][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:12.343][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:12.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:12.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:12.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:12.346][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:05:12.347][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:12.348][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:12.349][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:12.350][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:05:12.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:12.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:12.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:12.353][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:12.354][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:12.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:12.356][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:12.357][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:12.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:12.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:12.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:12.360][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:12.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:12.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:12.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:12.363][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:12.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:12.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:12.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:12.367][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:12.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:12.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:12.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:12.370][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:12.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:12.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:12.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:12.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:12.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:12.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:12.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:12.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:12.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:12.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:12.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:12.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:12.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:12.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:12.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:12.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:12.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:12.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:12.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:12.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:12.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:12.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:12.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:12.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:12.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:12.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:12.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:12.393][self$createEntryFromContent] Accession numbers: 79074.
biodb.TRACE[2025-03-15 16:05:12.394][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:12.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:12.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:12.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:12.397][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:12.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:12.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:12.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:12.401][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:12.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:12.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:12.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:12.404][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:12.405][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:12.405][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:12.410][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:12.411][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:12.412][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:12.413][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:12.414][private$loadEntries] Creating entries from ids [1]: "79302".
biodb.DEBUG[2025-03-15 16:05:12.415][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:05:12.416][cch$loadFileContent] Trying to load 1 files from cache: [1]: "79302".
biodb.TRACE[2025-03-15 16:05:12.417][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:05:12.418][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:05:12.419][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:05:12.420][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:05:12.421][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:05:12.422][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:05:12.424][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:12.425][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:12.426][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:12.431][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:12.432][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:12.433][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:12.434][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:12.435][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79302".
biodb.DEBUG[2025-03-15 16:05:12.437][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:05:12.454][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:05:12.456][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79302".
biodb.TRACE[2025-03-15 16:05:12.826][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79302).
biodb.DEBUG[2025-03-15 16:05:13.198][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:05:13.200][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/db109891c430ecee6c4d31019e936bb4.content"
biodb.TRACE[2025-03-15 16:05:13.203][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/db109891c430ecee6c4d31019e936bb4.request"
biodb.TRACE[2025-03-15 16:05:13.205][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79302.xml"
biodb.DEBUG[2025-03-15 16:05:13.207][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:05:13.208][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:05:13.209][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:05:13.210][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:13.211][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:13.212][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:13.217][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:13.218][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:13.219][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:13.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:13.221][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:13.222][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:13.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:13.224][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:13.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:13.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:13.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:13.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:13.228][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:13.228][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:13.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:13.230][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:13.231][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:13.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:13.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:13.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:13.234][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:13.235][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:13.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:13.236][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:13.237][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:13.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:13.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:13.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:13.241][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:13.241][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:13.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:13.243][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:13.244][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:13.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:13.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:13.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:13.247][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:13.248][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:13.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:13.250][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:13.251][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:13.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:13.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:13.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:13.254][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:13.255][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:13.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:13.256][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:13.257][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:05:13.258][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:13.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:13.260][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:13.261][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:05:13.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:13.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:13.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:13.264][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:13.265][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:13.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:13.266][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:13.267][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:13.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:13.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:13.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:13.270][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:13.271][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:13.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:13.273][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:13.274][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:13.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:13.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:13.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:13.277][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:05:13.278][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:13.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:13.279][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:13.280][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:05:13.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:13.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:13.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:13.284][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:13.284][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:13.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:13.286][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:13.287][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:13.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:13.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:13.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:13.290][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:13.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:13.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:13.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:13.293][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:13.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:13.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:13.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:13.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:13.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:13.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:13.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:13.300][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:13.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:13.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:13.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:13.303][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:13.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:13.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:13.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:13.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:13.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:13.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:13.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:13.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:13.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:13.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:13.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:13.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:13.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:13.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:13.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:13.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:13.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:13.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:13.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:13.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:13.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:13.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:13.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:13.341][self$createEntryFromContent] Accession numbers: 79302.
biodb.TRACE[2025-03-15 16:05:13.342][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:13.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:13.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:13.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:13.355][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:13.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:13.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:13.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:13.358][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:13.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:13.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:13.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:13.362][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:13.363][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:13.363][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:13.369][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:13.369][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:13.370][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:13.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:13.372][private$loadEntries] Creating entries from ids [1]: "84164".
biodb.DEBUG[2025-03-15 16:05:13.373][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:05:13.374][cch$loadFileContent] Trying to load 1 files from cache: [1]: "84164".
biodb.TRACE[2025-03-15 16:05:13.375][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:05:13.376][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:05:13.377][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:05:13.378][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:05:13.379][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:05:13.380][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:05:13.382][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:13.383][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:13.383][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:13.389][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:13.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:13.390][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:13.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:13.392][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=84164".
biodb.DEBUG[2025-03-15 16:05:13.394][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:05:13.395][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:05:13.396][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=84164".
biodb.TRACE[2025-03-15 16:05:13.759][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=84164).
biodb.DEBUG[2025-03-15 16:05:14.115][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:05:14.117][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5878d01d3db7a255abcfdf35c60dd985.content"
biodb.TRACE[2025-03-15 16:05:14.120][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5878d01d3db7a255abcfdf35c60dd985.request"
biodb.TRACE[2025-03-15 16:05:14.123][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/84164.xml"
biodb.DEBUG[2025-03-15 16:05:14.124][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:05:14.126][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:05:14.127][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:05:14.128][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:14.129][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:14.129][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:14.134][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:14.135][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:14.136][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:14.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:14.138][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:14.139][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:14.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:14.141][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:14.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:14.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:14.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:14.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:14.145][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:14.146][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:14.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:14.148][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:14.149][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:14.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:14.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:14.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:14.153][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:14.154][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:14.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:14.155][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:14.157][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:14.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:14.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:14.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:14.160][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:14.161][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:14.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:14.162][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:14.163][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:14.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:14.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:14.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:14.167][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:14.168][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:14.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:14.170][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:14.171][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:14.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:14.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:14.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:14.174][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:14.175][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:14.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:14.177][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:14.178][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:05:14.179][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:14.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:14.181][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:14.182][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:05:14.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:14.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:14.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:14.185][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:14.186][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:14.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:14.188][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:14.189][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:14.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:14.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:14.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:14.193][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:14.193][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:14.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:14.195][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:14.196][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:14.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:14.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:14.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:14.200][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:05:14.201][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:14.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:14.202][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:14.203][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:05:14.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:14.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:14.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:14.207][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:14.208][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:14.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:14.209][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:14.210][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:14.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:14.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:14.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:14.214][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:14.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:14.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:14.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:14.217][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:14.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:14.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:14.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:14.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:14.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:14.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:14.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:14.224][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:14.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:14.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:14.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:14.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:14.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:14.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:14.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:14.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:14.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:14.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:14.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:14.249][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:14.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:14.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:14.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:14.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:14.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:14.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:14.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:14.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:14.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:14.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:14.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:14.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:14.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:14.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:14.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:14.268][self$createEntryFromContent] Accession numbers: 84164.
biodb.TRACE[2025-03-15 16:05:14.268][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:14.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:14.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:14.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:14.272][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:14.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:14.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:14.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:14.275][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:14.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:14.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:14.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:14.278][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:14.279][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:14.280][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:14.285][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:14.286][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:14.286][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:14.287][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:14.288][private$loadEntries] Creating entries from ids [1]: "132314".
biodb.DEBUG[2025-03-15 16:05:14.289][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:05:14.290][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132314".
biodb.TRACE[2025-03-15 16:05:14.291][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:05:14.292][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:05:14.293][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:05:14.294][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:05:14.295][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:05:14.296][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:05:14.298][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:14.299][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:14.300][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:14.305][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:14.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:14.306][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:14.307][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:14.308][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132314".
biodb.DEBUG[2025-03-15 16:05:14.311][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:05:14.312][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:05:14.313][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132314".
biodb.TRACE[2025-03-15 16:05:14.668][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132314).
biodb.DEBUG[2025-03-15 16:05:15.059][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:05:15.061][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/faff8e4827734119a684907f214879a2.content"
biodb.TRACE[2025-03-15 16:05:15.064][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/faff8e4827734119a684907f214879a2.request"
biodb.TRACE[2025-03-15 16:05:15.067][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132314.xml"
biodb.DEBUG[2025-03-15 16:05:15.068][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:05:15.069][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:05:15.070][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:05:15.072][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:15.072][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:15.073][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:15.078][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:15.079][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:15.080][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:15.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:15.082][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:15.083][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:15.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:15.084][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:15.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:15.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:15.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:15.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:15.089][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:15.090][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:15.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:15.091][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:15.092][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:15.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:15.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:15.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:15.096][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:15.097][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:15.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:15.098][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:15.099][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:15.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:15.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:15.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:15.103][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:15.103][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:15.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:15.105][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:15.106][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:15.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:15.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:15.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:15.109][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:15.110][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:15.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:15.111][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:15.113][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:15.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:15.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:15.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:15.116][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:15.116][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:15.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:15.118][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:15.119][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:05:15.120][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:15.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:15.121][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:15.122][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:05:15.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:15.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:15.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:15.132][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:15.138][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:15.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:15.140][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:15.141][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:15.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:15.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:15.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:15.145][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:15.145][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:15.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:15.147][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:15.148][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:15.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:15.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:15.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:15.152][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:05:15.153][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:15.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:15.154][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:15.155][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:05:15.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:15.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:15.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:15.159][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:15.159][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:15.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:15.161][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:15.162][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:15.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:15.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:15.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:15.165][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:15.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:15.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:15.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:15.168][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:15.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:15.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:15.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:15.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:15.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:15.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:15.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:15.175][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:15.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:15.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:15.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:15.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:15.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:15.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:15.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:15.181][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:15.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:15.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:15.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:15.184][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:15.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:15.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:15.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:15.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:15.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:15.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:15.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:15.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:15.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:15.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:15.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:15.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:15.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:15.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:15.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:15.197][self$createEntryFromContent] Accession numbers: 132314.
biodb.TRACE[2025-03-15 16:05:15.198][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:15.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:15.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:15.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:15.201][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:15.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:15.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:15.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:15.204][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:15.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:15.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:15.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:15.208][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:15.208][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:15.209][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:15.214][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:15.215][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:15.216][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:15.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:15.217][private$loadEntries] Creating entries from ids [1]: "132338".
biodb.DEBUG[2025-03-15 16:05:15.233][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:05:15.234][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132338".
biodb.TRACE[2025-03-15 16:05:15.235][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:05:15.236][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:05:15.237][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:05:15.238][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:05:15.238][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:05:15.239][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:05:15.241][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:15.242][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:15.243][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:15.247][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:15.251][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:15.253][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:15.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:15.255][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132338".
biodb.DEBUG[2025-03-15 16:05:15.257][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:05:15.258][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:05:15.259][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132338".
biodb.TRACE[2025-03-15 16:05:15.628][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132338).
biodb.DEBUG[2025-03-15 16:05:16.025][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:05:16.028][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ab2b9171a775a690a32a30e73cf2a1c.content"
biodb.TRACE[2025-03-15 16:05:16.031][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ab2b9171a775a690a32a30e73cf2a1c.request"
biodb.TRACE[2025-03-15 16:05:16.033][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132338.xml"
biodb.DEBUG[2025-03-15 16:05:16.034][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:05:16.035][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:05:16.036][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:05:16.037][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:16.038][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:16.039][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:16.044][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:16.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:16.045][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:16.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:16.048][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:16.049][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:16.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:16.050][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:16.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:16.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:16.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:16.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:16.054][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:16.055][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:16.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:16.056][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:16.057][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:16.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:16.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:16.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:16.060][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:16.061][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:16.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:16.063][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:16.064][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:16.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:16.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:16.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:16.067][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:16.068][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:16.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:16.069][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:16.070][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:16.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:16.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:16.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:16.073][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:16.074][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:16.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:16.076][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:16.077][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:16.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:16.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:16.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:16.080][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:16.081][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:16.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:16.082][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:16.083][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:05:16.084][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:16.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:16.086][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:16.087][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:05:16.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:16.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:16.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:16.090][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:16.091][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:16.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:16.093][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:16.094][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:16.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:16.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:16.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:16.097][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:16.098][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:16.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:16.099][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:16.100][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:16.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:16.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:16.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:16.104][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:05:16.105][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:16.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:16.106][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:16.107][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:05:16.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:16.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:16.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:16.110][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:16.111][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:16.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:16.112][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:16.113][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:16.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:16.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:16.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:16.116][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:16.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:16.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:16.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:16.119][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:16.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:16.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:16.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:16.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:16.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:16.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:16.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:16.126][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:16.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:16.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:16.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:16.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:16.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:16.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:16.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:16.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:16.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:16.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:16.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:16.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:16.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:16.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:16.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:16.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:16.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:16.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:16.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:16.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:16.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:16.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:16.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:16.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:16.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:16.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:16.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:16.148][self$createEntryFromContent] Accession numbers: 132338.
biodb.TRACE[2025-03-15 16:05:16.149][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:16.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:16.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:16.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:16.152][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:16.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:16.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:16.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:16.155][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:16.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:16.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:16.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:16.158][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:16.159][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:16.159][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:16.164][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:16.165][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:16.166][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:16.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:16.167][private$loadEntries] Creating entries from ids [1]: "139019".
biodb.DEBUG[2025-03-15 16:05:16.168][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:05:16.169][cch$loadFileContent] Trying to load 1 files from cache: [1]: "139019".
biodb.TRACE[2025-03-15 16:05:16.170][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:05:16.171][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:05:16.172][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:05:16.173][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:05:16.174][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:05:16.174][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:05:16.176][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:16.177][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:16.178][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:16.182][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:16.183][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:16.184][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:16.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:16.186][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139019".
biodb.DEBUG[2025-03-15 16:05:16.188][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:05:16.189][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:05:16.190][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139019".
biodb.TRACE[2025-03-15 16:05:16.548][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139019).
biodb.DEBUG[2025-03-15 16:05:16.928][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:05:16.930][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c6e6f1783364d5307c1e22caca9f3324.content"
biodb.TRACE[2025-03-15 16:05:16.933][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c6e6f1783364d5307c1e22caca9f3324.request"
biodb.TRACE[2025-03-15 16:05:16.936][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/139019.xml"
biodb.DEBUG[2025-03-15 16:05:16.938][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:05:16.939][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:05:16.940][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:05:16.941][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:16.942][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:16.942][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:16.947][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:16.948][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:16.949][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:16.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:16.952][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:16.952][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:16.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:16.954][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:16.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:16.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:16.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:16.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:16.958][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:16.959][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:16.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:16.961][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:16.962][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:16.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:16.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:16.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:16.965][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:16.966][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:16.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:16.967][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:16.968][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:16.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:16.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:16.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:16.972][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:16.972][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:16.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:16.974][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:16.975][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:16.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:16.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:16.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:16.978][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:16.979][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:16.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:16.981][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:16.982][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:16.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:16.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:16.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:16.985][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:16.986][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:16.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:16.987][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:16.988][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:05:16.989][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:16.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:16.991][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:16.992][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:05:16.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:16.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:16.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:16.995][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:16.996][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:16.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:16.998][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:16.999][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:16.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:17.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:17.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:17.002][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:17.003][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:17.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:17.004][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:17.005][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:17.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:17.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:17.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:17.008][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:05:17.009][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:17.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:17.011][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:17.012][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:05:17.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:17.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:17.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:17.015][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:17.016][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:17.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:17.017][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:17.018][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:17.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:17.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:17.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:17.021][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:17.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:17.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:17.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:17.025][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:17.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:17.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:17.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:17.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:17.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:17.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:17.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:17.032][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:17.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:17.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:17.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:17.035][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:17.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:17.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:17.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:17.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:17.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:17.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:17.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:17.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:17.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:17.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:17.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:17.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:17.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:17.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:17.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:17.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:17.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:17.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:17.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:17.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:17.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:17.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:17.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:17.055][self$createEntryFromContent] Accession numbers: 139019.
biodb.TRACE[2025-03-15 16:05:17.055][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:17.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:17.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:17.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:17.059][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:17.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:17.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:17.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:17.062][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:17.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:17.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:17.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:17.065][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:17.066][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:17.067][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:17.072][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:17.073][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:17.073][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:17.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:17.075][private$loadEntries] Creating entries from ids [1]: "139367".
biodb.DEBUG[2025-03-15 16:05:17.076][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:05:17.077][cch$loadFileContent] Trying to load 1 files from cache: [1]: "139367".
biodb.TRACE[2025-03-15 16:05:17.078][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:05:17.079][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:05:17.080][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:05:17.080][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:05:17.081][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:05:17.082][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:05:17.085][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:17.085][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:17.086][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:17.091][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:17.092][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:17.093][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:17.093][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:17.094][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139367".
biodb.DEBUG[2025-03-15 16:05:17.097][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:05:17.098][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:05:17.099][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139367".
biodb.TRACE[2025-03-15 16:05:17.459][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139367).
biodb.DEBUG[2025-03-15 16:05:17.825][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:05:17.827][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ad7d38680a9a89d96fe967aa23d4180d.content"
biodb.TRACE[2025-03-15 16:05:17.830][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ad7d38680a9a89d96fe967aa23d4180d.request"
biodb.TRACE[2025-03-15 16:05:17.833][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/139367.xml"
biodb.DEBUG[2025-03-15 16:05:17.835][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:05:17.836][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:05:17.837][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:05:17.838][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:17.839][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:17.839][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:17.845][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:17.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:17.846][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:17.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:17.849][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:17.850][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:17.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:17.851][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:17.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:17.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:17.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:17.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:17.856][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:17.857][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:17.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:17.858][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:17.859][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:17.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:17.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:17.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:17.862][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:17.863][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:17.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:17.865][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:17.866][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:17.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:17.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:17.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:17.869][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:17.870][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:17.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:17.871][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:17.873][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:17.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:17.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:17.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:17.876][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:17.877][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:17.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:17.878][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:17.879][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:17.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:17.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:17.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:17.883][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:17.884][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:17.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:17.885][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:17.886][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:05:17.887][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:17.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:17.888][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:17.889][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:05:17.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:17.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:17.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:17.893][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:17.894][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:17.894][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:17.895][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:17.896][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:17.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:17.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:17.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:17.899][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:17.900][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:17.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:17.902][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:17.903][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:17.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:17.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:17.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:17.906][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:05:17.907][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:17.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:17.909][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:17.910][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:05:17.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:17.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:17.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:17.913][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:17.914][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:17.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:17.916][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:17.917][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:17.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:17.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:17.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:17.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:17.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:17.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:17.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:17.923][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:17.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:17.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:17.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:17.926][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:17.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:17.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:17.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:17.929][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:17.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:17.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:17.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:17.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:17.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:17.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:17.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:17.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:17.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:17.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:17.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:17.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:17.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:17.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:17.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:17.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:17.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:17.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:17.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:17.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:17.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:17.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:17.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:17.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:17.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:17.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:17.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:17.964][self$createEntryFromContent] Accession numbers: 139367.
biodb.TRACE[2025-03-15 16:05:17.965][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:17.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:17.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:17.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:17.968][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:17.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:17.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:17.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:17.971][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:17.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:17.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:17.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:17.974][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:17.975][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:17.976][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:17.981][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:17.981][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:17.982][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:17.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:17.984][private$loadEntries] Creating entries from ids [1]: "145029".
biodb.DEBUG[2025-03-15 16:05:17.985][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:05:17.986][cch$loadFileContent] Trying to load 1 files from cache: [1]: "145029".
biodb.TRACE[2025-03-15 16:05:17.987][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:05:17.988][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:05:17.989][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:05:17.990][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:05:17.991][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:05:17.991][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:05:17.993][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:17.994][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:17.995][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:18.000][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:18.001][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:18.001][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:18.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:18.003][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=145029".
biodb.DEBUG[2025-03-15 16:05:18.005][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:05:18.006][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:05:18.007][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=145029".
biodb.TRACE[2025-03-15 16:05:18.369][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=145029).
biodb.DEBUG[2025-03-15 16:05:18.805][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:05:18.807][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6db4642c7bdbd10dc105b3470394caa5.content"
biodb.TRACE[2025-03-15 16:05:18.811][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6db4642c7bdbd10dc105b3470394caa5.request"
biodb.TRACE[2025-03-15 16:05:18.813][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/145029.xml"
biodb.DEBUG[2025-03-15 16:05:18.815][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:05:18.816][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:05:18.817][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:05:18.818][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:18.819][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:18.820][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:18.825][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:18.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:18.826][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:18.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:18.829][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:18.830][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:18.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:18.832][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:18.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:18.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:18.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:18.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:18.836][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:18.837][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:18.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:18.838][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:18.839][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:18.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:18.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:18.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:18.843][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:18.843][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:18.844][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:18.845][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:18.846][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:18.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:18.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:18.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:18.849][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:18.850][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:18.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:18.852][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:18.853][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:18.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:18.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:18.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:18.856][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:18.857][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:18.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:18.859][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:18.860][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:18.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:18.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:18.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:18.863][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:18.864][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:18.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:18.866][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:18.867][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:05:18.868][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:18.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:18.870][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:18.871][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:05:18.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:18.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:18.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:18.874][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:18.875][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:18.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:18.877][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:18.878][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:18.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:18.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:18.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:18.881][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:18.882][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:18.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:18.884][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:18.885][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:18.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:18.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:18.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:18.888][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:05:18.889][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:18.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:18.891][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:18.892][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:05:18.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:18.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:18.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:18.895][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:18.896][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:18.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:18.897][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:18.898][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:18.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:18.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:18.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:18.901][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:18.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:18.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:18.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:18.904][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:18.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:18.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:18.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:18.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:18.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:18.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:18.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:18.910][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:18.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:18.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:18.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:18.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:18.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:18.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:18.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:18.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:18.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:18.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:18.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:18.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:18.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:18.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:18.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:18.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:18.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:18.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:18.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:18.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:18.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:18.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:18.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:18.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:18.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:18.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:18.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:18.934][self$createEntryFromContent] Accession numbers: 145029.
biodb.TRACE[2025-03-15 16:05:18.934][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:18.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:18.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:18.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:18.938][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:18.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:18.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:18.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:18.941][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:18.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:18.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:18.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:18.944][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:18.945][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:18.946][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:18.951][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:18.952][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:18.952][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:18.953][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:18.954][private$loadEntries] Creating entries from ids [1]: "173077".
biodb.DEBUG[2025-03-15 16:05:18.955][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:05:18.956][cch$loadFileContent] Trying to load 1 files from cache: [1]: "173077".
biodb.TRACE[2025-03-15 16:05:18.957][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:05:18.958][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:05:18.959][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:05:18.960][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:05:18.961][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:05:18.962][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:05:18.964][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:18.965][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:18.966][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:18.971][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:18.972][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:18.972][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:18.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:18.974][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=173077".
biodb.DEBUG[2025-03-15 16:05:18.976][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:05:18.977][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:05:18.978][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=173077".
biodb.TRACE[2025-03-15 16:05:19.337][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=173077).
biodb.DEBUG[2025-03-15 16:05:19.858][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:05:19.860][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/337fedbe654250105ac3b03683794b9b.content"
biodb.TRACE[2025-03-15 16:05:19.864][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/337fedbe654250105ac3b03683794b9b.request"
biodb.TRACE[2025-03-15 16:05:19.866][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/173077.xml"
biodb.DEBUG[2025-03-15 16:05:19.868][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:05:19.870][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:05:19.871][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:05:19.872][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:19.873][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:19.873][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:19.879][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:19.880][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:19.880][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:19.881][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:19.883][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:19.884][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:19.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:19.886][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:19.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:19.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:19.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:19.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:19.890][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:19.891][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:19.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:19.893][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:19.894][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:19.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:19.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:19.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:19.897][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:19.898][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:19.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:19.900][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:19.901][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:19.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:19.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:19.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:19.904][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:19.905][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:19.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:19.906][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:19.907][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:19.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:19.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:19.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:19.924][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:19.925][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:19.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:19.927][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:19.928][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:19.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:19.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:19.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:19.932][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:19.933][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:19.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:19.934][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:19.935][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:05:19.936][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:19.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:19.938][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:19.939][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:05:19.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:19.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:19.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:19.942][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:19.943][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:19.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:19.945][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:19.946][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:19.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:19.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:19.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:19.949][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:19.949][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:19.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:19.951][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:19.952][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:19.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:19.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:19.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:19.955][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:05:19.956][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:19.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:19.958][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:19.959][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:05:19.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:19.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:19.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:19.962][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:19.963][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:19.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:19.965][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:19.966][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:19.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:19.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:19.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:19.969][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:19.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:19.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:19.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:19.972][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:19.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:19.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:19.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:19.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:19.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:19.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:19.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:19.979][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:19.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:19.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:19.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:19.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:19.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:19.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:19.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:19.985][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:19.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:19.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:19.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:19.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:19.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:19.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:19.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:19.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:19.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:19.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:19.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:19.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:19.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:19.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:19.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:19.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:20.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:20.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:20.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:20.002][self$createEntryFromContent] Accession numbers: 173077.
biodb.TRACE[2025-03-15 16:05:20.003][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:20.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:20.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:20.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:20.007][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:20.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:20.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:20.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:20.010][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:20.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:20.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:20.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:20.013][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:20.014][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:20.015][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:20.020][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:20.020][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:20.021][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:20.022][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:20.023][private$loadEntries] Creating entries from ids [1]: "365445".
biodb.DEBUG[2025-03-15 16:05:20.024][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:05:20.025][cch$loadFileContent] Trying to load 1 files from cache: [1]: "365445".
biodb.TRACE[2025-03-15 16:05:20.027][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:05:20.028][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:05:20.028][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:05:20.029][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:05:20.030][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:05:20.031][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:05:20.034][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:20.034][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:20.035][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:20.040][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:20.041][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:20.042][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:20.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:20.044][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=365445".
biodb.DEBUG[2025-03-15 16:05:20.046][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:05:20.047][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:05:20.048][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=365445".
biodb.TRACE[2025-03-15 16:05:20.402][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=365445).
biodb.DEBUG[2025-03-15 16:05:20.768][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:05:20.770][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/026ecb4be6491f40bcefe5cdf8425328.content"
biodb.TRACE[2025-03-15 16:05:20.773][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/026ecb4be6491f40bcefe5cdf8425328.request"
biodb.TRACE[2025-03-15 16:05:20.776][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365445.xml"
biodb.DEBUG[2025-03-15 16:05:20.777][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:05:20.778][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:05:20.779][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:05:20.781][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:20.782][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:20.783][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:20.788][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:20.788][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:20.789][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:20.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:20.792][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:20.793][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:20.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:20.795][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:20.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:20.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:20.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:20.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:20.799][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:20.800][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:20.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:20.802][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:20.803][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:20.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:20.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:20.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:20.806][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:20.807][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:20.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:20.809][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:20.810][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:20.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:20.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:20.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:20.813][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:20.814][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:20.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:20.816][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:20.817][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:20.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:20.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:20.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:20.820][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:20.821][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:20.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:20.823][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:20.824][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:20.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:20.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:20.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:20.827][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:20.828][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:20.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:20.829][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:20.831][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:05:20.832][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:20.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:20.833][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:20.834][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:05:20.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:20.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:20.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:20.837][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:20.838][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:20.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:20.840][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:20.841][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:20.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:20.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:20.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:20.844][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:20.845][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:20.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:20.847][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:20.848][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:20.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:20.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:20.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:20.851][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:05:20.852][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:20.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:20.853][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:20.854][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:05:20.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:20.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:20.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:20.858][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:20.858][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:20.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:20.860][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:20.861][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:20.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:20.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:20.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:20.864][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:20.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:20.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:20.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:20.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:20.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:20.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:20.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:20.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:20.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:20.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:20.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:20.874][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:20.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:20.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:20.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:20.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:20.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:20.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:20.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:20.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:20.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:20.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:20.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:20.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:20.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:20.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:20.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:20.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:20.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:20.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:20.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:20.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:20.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:20.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:20.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:20.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:20.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:20.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:20.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:20.898][self$createEntryFromContent] Accession numbers: 365445.
biodb.TRACE[2025-03-15 16:05:20.899][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:20.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:20.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:20.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:20.903][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:20.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:20.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:20.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:20.906][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:20.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:20.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:20.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:20.910][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:20.910][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:20.911][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:20.916][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:20.917][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:20.918][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:20.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:20.919][private$loadEntries] Creating entries from ids [1]: "32151".
biodb.DEBUG[2025-03-15 16:05:20.920][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:05:20.922][cch$loadFileContent] Trying to load 1 files from cache: [1]: "32151".
biodb.TRACE[2025-03-15 16:05:20.923][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:05:20.924][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:05:20.925][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:05:20.933][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:05:20.937][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:05:20.938][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:05:20.941][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:20.942][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:20.943][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:20.948][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:20.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:20.950][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:20.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:20.951][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=32151".
biodb.DEBUG[2025-03-15 16:05:20.954][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:05:20.955][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:05:20.956][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=32151".
biodb.TRACE[2025-03-15 16:05:21.316][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=32151).
biodb.DEBUG[2025-03-15 16:05:21.711][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:05:21.713][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/094c4c16dd654c0e11594a0cd5a42217.content"
biodb.TRACE[2025-03-15 16:05:21.716][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/094c4c16dd654c0e11594a0cd5a42217.request"
biodb.TRACE[2025-03-15 16:05:21.719][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/32151.xml"
biodb.DEBUG[2025-03-15 16:05:21.720][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:05:21.721][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:05:21.722][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:05:21.724][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:21.724][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:21.725][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:21.730][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:21.730][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:21.731][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:21.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:21.734][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:21.735][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:21.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:21.736][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:21.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:21.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:21.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:21.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:21.741][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:21.742][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:21.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:21.743][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:21.744][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:21.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:21.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:21.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:21.748][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:21.749][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:21.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:21.750][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:21.752][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:21.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:21.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:21.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:21.755][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:21.756][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:21.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:21.757][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:21.758][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:21.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:21.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:21.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:21.762][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:21.763][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:21.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:21.764][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:21.765][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:21.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:21.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:21.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:21.769][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:21.770][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:21.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:21.771][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:21.772][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:05:21.773][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:21.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:21.775][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:21.776][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:05:21.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:21.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:21.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:21.779][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:21.780][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:21.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:21.782][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:21.783][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:21.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:21.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:21.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:21.786][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:21.787][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:21.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:21.789][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:21.790][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:21.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:21.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:21.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:21.794][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:05:21.795][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:21.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:21.797][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:21.798][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:05:21.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:21.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:21.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:21.801][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:21.802][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:21.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:21.804][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:21.805][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:21.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:21.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:21.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:21.808][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:21.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:21.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:21.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:21.812][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:21.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:21.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:21.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:21.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:21.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:21.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:21.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:21.819][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:21.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:21.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:21.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:21.822][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:21.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:21.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:21.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:21.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:21.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:21.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:21.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:21.829][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:21.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:21.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:21.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:21.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:21.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:21.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:21.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:21.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:21.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:21.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:21.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:21.839][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:21.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:21.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:21.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:21.842][self$createEntryFromContent] Accession numbers: 32151.
biodb.TRACE[2025-03-15 16:05:21.842][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:21.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:21.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:21.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:21.846][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:21.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:21.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:21.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:21.849][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:21.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:21.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:21.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:21.852][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:21.853][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:21.854][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:21.859][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:21.860][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:21.860][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:21.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:21.862][private$loadEntries] Creating entries from ids [1]: "67676".
biodb.DEBUG[2025-03-15 16:05:21.863][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:05:21.865][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67676".
biodb.TRACE[2025-03-15 16:05:21.866][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:05:21.867][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:05:21.868][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:05:21.869][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:05:21.869][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:05:21.870][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:05:21.873][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:21.873][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:21.874][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:21.879][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:21.880][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:21.881][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:21.882][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:21.883][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67676".
biodb.DEBUG[2025-03-15 16:05:21.885][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:05:21.886][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:05:21.887][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67676".
biodb.TRACE[2025-03-15 16:05:22.244][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67676).
biodb.DEBUG[2025-03-15 16:05:22.603][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:05:22.605][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f87eff9f669415e5528b4d9281ce70e2.content"
biodb.TRACE[2025-03-15 16:05:22.608][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f87eff9f669415e5528b4d9281ce70e2.request"
biodb.TRACE[2025-03-15 16:05:22.610][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67676.xml"
biodb.DEBUG[2025-03-15 16:05:22.611][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:05:22.612][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:05:22.613][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:05:22.614][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:22.615][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:22.616][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:22.621][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:22.621][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:22.622][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:22.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:22.625][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:22.625][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:22.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:22.627][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:22.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:22.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:22.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:22.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:22.631][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:22.632][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:22.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:22.634][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:22.635][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:22.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:22.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:22.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:22.638][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:22.639][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:22.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:22.640][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:22.641][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:22.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:22.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:22.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:22.644][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:22.645][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:22.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:22.647][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:22.648][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:22.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:22.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:22.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:22.651][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:22.652][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:22.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:22.653][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:22.654][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:22.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:22.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:22.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:22.657][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:22.658][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:22.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:22.659][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:22.660][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:05:22.661][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:22.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:22.663][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:22.664][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:05:22.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:22.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:22.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:22.667][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:22.668][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:22.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:22.669][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:22.670][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:22.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:22.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:22.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:22.673][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:22.674][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:22.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:22.676][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:22.677][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:22.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:22.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:22.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:22.680][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:05:22.681][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:22.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:22.683][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:22.684][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:05:22.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:22.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:22.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:22.687][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:22.688][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:22.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:22.701][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:22.702][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:22.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:22.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:22.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:22.706][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:22.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:22.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:22.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:22.709][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:22.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:22.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:22.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:22.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:22.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:22.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:22.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:22.715][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:22.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:22.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:22.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:22.718][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:22.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:22.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:22.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:22.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:22.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:22.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:22.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:22.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:22.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:22.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:22.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:22.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:22.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:22.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:22.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:22.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:22.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:22.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:22.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:22.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:22.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:22.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:22.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:22.737][self$createEntryFromContent] Accession numbers: 67676.
biodb.TRACE[2025-03-15 16:05:22.738][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:22.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:22.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:22.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:22.741][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:22.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:22.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:22.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:22.744][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:22.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:22.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:22.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:22.746][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:22.747][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:22.748][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:22.752][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:22.753][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:22.753][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:22.754][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:22.755][private$loadEntries] Creating entries from ids [1]: "69690".
biodb.DEBUG[2025-03-15 16:05:22.756][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:05:22.757][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69690".
biodb.TRACE[2025-03-15 16:05:22.758][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:05:22.759][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:05:22.760][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:05:22.760][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:05:22.761][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:05:22.762][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:05:22.765][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:22.765][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:22.766][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:22.770][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:22.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:22.772][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:22.773][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:22.774][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69690".
biodb.DEBUG[2025-03-15 16:05:22.776][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:05:22.777][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:05:22.778][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69690".
biodb.TRACE[2025-03-15 16:05:23.229][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69690).
biodb.DEBUG[2025-03-15 16:05:23.596][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:05:23.598][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ce43467f7e4550d502ff0cc79c06666.content"
biodb.TRACE[2025-03-15 16:05:23.602][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ce43467f7e4550d502ff0cc79c06666.request"
biodb.TRACE[2025-03-15 16:05:23.604][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69690.xml"
biodb.DEBUG[2025-03-15 16:05:23.606][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:05:23.607][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:05:23.608][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:05:23.609][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:23.610][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:23.611][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:23.616][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:23.617][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:23.618][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:23.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:23.621][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:23.622][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:23.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:23.623][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:23.625][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:23.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:23.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:23.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:23.628][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:23.629][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:23.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:23.631][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:23.632][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:23.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:23.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:23.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:23.636][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:23.636][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:23.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:23.638][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:23.639][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:23.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:23.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:23.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:23.642][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:23.643][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:23.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:23.645][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:23.646][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:23.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:23.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:23.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:23.649][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:23.650][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:23.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:23.651][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:23.652][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:23.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:23.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:23.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:23.655][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:23.656][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:23.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:23.658][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:23.659][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:05:23.660][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:23.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:23.661][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:23.662][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:05:23.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:23.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:23.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:23.666][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:23.666][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:23.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:23.668][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:23.669][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:23.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:23.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:23.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:23.672][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:23.673][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:23.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:23.674][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:23.676][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:23.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:23.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:23.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:23.679][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:05:23.680][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:23.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:23.681][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:23.683][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:05:23.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:23.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:23.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:23.686][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:23.687][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:23.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:23.688][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:23.690][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:23.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:23.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:23.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:23.693][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:23.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:23.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:23.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:23.696][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:23.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:23.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:23.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:23.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:23.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:23.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:23.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:23.703][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:23.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:23.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:23.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:23.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:23.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:23.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:23.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:23.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:23.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:23.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:23.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:23.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:23.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:23.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:23.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:23.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:23.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:23.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:23.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:23.719][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:23.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:23.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:23.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:23.722][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:23.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:23.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:23.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:23.725][self$createEntryFromContent] Accession numbers: 69690.
biodb.TRACE[2025-03-15 16:05:23.726][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:23.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:23.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:23.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:23.729][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:23.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:23.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:23.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:23.732][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:23.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:23.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:23.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:23.735][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:23.736][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:23.736][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:23.742][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:23.743][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:23.744][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:23.744][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:23.745][private$loadEntries] Creating entries from ids [1]: "69734".
biodb.DEBUG[2025-03-15 16:05:23.746][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:05:23.747][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69734".
biodb.TRACE[2025-03-15 16:05:23.748][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:05:23.750][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:05:23.751][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:05:23.751][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:05:23.752][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:05:23.753][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:05:23.755][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:23.756][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:23.757][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:23.762][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:23.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:23.764][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:23.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:23.766][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69734".
biodb.DEBUG[2025-03-15 16:05:23.768][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:05:23.769][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:05:23.770][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69734".
biodb.TRACE[2025-03-15 16:05:24.123][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69734).
biodb.DEBUG[2025-03-15 16:05:24.489][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:05:24.491][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3ed7db8dba94801a8856f9bde313afe1.content"
biodb.TRACE[2025-03-15 16:05:24.494][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3ed7db8dba94801a8856f9bde313afe1.request"
biodb.TRACE[2025-03-15 16:05:24.497][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69734.xml"
biodb.DEBUG[2025-03-15 16:05:24.498][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:05:24.499][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:05:24.500][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:05:24.502][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:24.502][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:24.503][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:24.508][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:24.509][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:24.510][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:24.510][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:24.512][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:24.513][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:24.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:24.514][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:24.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:24.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:24.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:24.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:24.532][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:24.534][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:24.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:24.535][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:24.536][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:24.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:24.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:24.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:24.540][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:24.541][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:24.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:24.543][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:24.544][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:24.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:24.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:24.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:24.548][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:24.548][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:24.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:24.550][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:24.551][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:24.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:24.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:24.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:24.555][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:24.556][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:24.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:24.558][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:24.559][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:24.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:24.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:24.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:24.563][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:24.563][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:24.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:24.565][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:24.566][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:05:24.566][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:24.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:24.568][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:24.569][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:05:24.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:24.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:24.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:24.572][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:24.573][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:24.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:24.575][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:24.576][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:24.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:24.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:24.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:24.579][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:24.580][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:24.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:24.581][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:24.582][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:24.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:24.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:24.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:24.586][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:05:24.587][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:24.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:24.588][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:24.589][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:05:24.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:24.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:24.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:24.592][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:24.593][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:24.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:24.595][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:24.596][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:24.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:24.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:24.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:24.599][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:24.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:24.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:24.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:24.603][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:24.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:24.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:24.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:24.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:24.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:24.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:24.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:24.609][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:24.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:24.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:24.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:24.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:24.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:24.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:24.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:24.615][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:24.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:24.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:24.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:24.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:24.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:24.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:24.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:24.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:24.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:24.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:24.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:24.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:24.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:24.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:24.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:24.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:24.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:24.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:24.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:24.633][self$createEntryFromContent] Accession numbers: 69734.
biodb.TRACE[2025-03-15 16:05:24.634][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:24.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:24.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:24.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:24.637][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:24.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:24.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:24.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:24.640][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:24.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:24.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:24.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:24.644][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:24.645][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:24.646][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:24.650][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:24.651][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:24.652][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:24.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:24.654][private$loadEntries] Creating entries from ids [1]: "79978".
biodb.DEBUG[2025-03-15 16:05:24.655][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:05:24.656][cch$loadFileContent] Trying to load 1 files from cache: [1]: "79978".
biodb.TRACE[2025-03-15 16:05:24.657][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:05:24.658][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:05:24.659][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:05:24.660][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:05:24.661][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:05:24.662][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:05:24.665][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:24.665][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:24.666][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:24.671][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:24.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:24.673][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:24.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:24.674][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79978".
biodb.DEBUG[2025-03-15 16:05:24.677][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:05:24.677][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:05:24.679][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79978".
biodb.TRACE[2025-03-15 16:05:25.031][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79978).
biodb.DEBUG[2025-03-15 16:05:25.389][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:05:25.391][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fb887d003d6fc3b4aa767483d261b31c.content"
biodb.TRACE[2025-03-15 16:05:25.394][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fb887d003d6fc3b4aa767483d261b31c.request"
biodb.TRACE[2025-03-15 16:05:25.397][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79978.xml"
biodb.DEBUG[2025-03-15 16:05:25.398][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:05:25.399][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:05:25.400][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:05:25.402][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:25.402][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:25.403][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:25.408][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:25.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:25.410][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:25.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:25.412][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:25.413][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:25.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:25.415][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:25.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:25.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:25.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:25.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:25.419][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:25.420][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:25.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:25.421][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:25.423][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:25.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:25.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:25.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:25.426][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:25.427][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:25.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:25.428][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:25.429][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:25.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:25.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:25.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:25.432][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:25.433][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:25.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:25.435][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:25.436][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:25.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:25.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:25.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:25.439][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:25.440][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:25.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:25.441][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:25.443][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:25.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:25.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:25.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:25.446][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:25.447][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:25.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:25.448][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:25.450][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:25.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:25.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:25.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:25.453][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:05:25.454][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:25.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:25.455][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:25.457][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:05:25.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:25.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:25.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:25.460][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:25.461][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:25.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:25.463][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:25.464][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:25.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:25.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:25.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:25.468][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:25.469][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:25.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:25.470][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:25.471][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:25.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:25.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:25.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:25.475][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:05:25.476][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:25.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:25.477][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:25.478][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:05:25.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:25.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:25.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:25.482][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:25.483][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:25.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:25.485][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:25.486][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:25.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:25.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:25.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:25.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:25.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:25.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:25.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:25.493][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:25.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:25.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:25.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:25.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:25.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:25.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:25.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:25.501][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:25.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:25.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:25.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:25.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:25.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:25.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:25.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:25.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:25.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:25.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:25.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:25.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:25.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:25.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:25.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:25.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:25.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:25.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:25.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:25.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:25.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:25.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:25.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:25.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:25.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:25.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:25.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:25.525][self$createEntryFromContent] Accession numbers: 79978.
biodb.TRACE[2025-03-15 16:05:25.535][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:25.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:25.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:25.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:25.540][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:25.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:25.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:25.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:25.543][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:25.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:25.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:25.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:25.547][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:25.547][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:25.548][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:25.553][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:25.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:25.555][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:25.556][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:25.557][private$loadEntries] Creating entries from ids [1]: "88771".
biodb.DEBUG[2025-03-15 16:05:25.557][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-15 16:05:25.559][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88771".
biodb.TRACE[2025-03-15 16:05:25.560][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-15 16:05:25.561][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-15 16:05:25.561][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-15 16:05:25.562][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-15 16:05:25.563][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-03-15 16:05:25.564][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-03-15 16:05:25.566][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:25.567][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:25.568][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:25.573][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:25.573][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:25.574][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:25.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:25.576][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88771".
biodb.DEBUG[2025-03-15 16:05:25.579][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-03-15 16:05:25.579][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-03-15 16:05:25.581][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88771".
biodb.TRACE[2025-03-15 16:05:25.935][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88771).
biodb.DEBUG[2025-03-15 16:05:26.309][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-03-15 16:05:26.311][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f96325cdb7f39b42d0ab67a7fc41aced.content"
biodb.TRACE[2025-03-15 16:05:26.314][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f96325cdb7f39b42d0ab67a7fc41aced.request"
biodb.TRACE[2025-03-15 16:05:26.317][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88771.xml"
biodb.DEBUG[2025-03-15 16:05:26.318][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-03-15 16:05:26.319][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-15 16:05:26.320][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-15 16:05:26.322][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:26.323][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:26.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:26.328][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:26.329][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:26.330][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:26.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:26.333][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:26.334][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:26.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.336][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:26.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:26.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.340][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:26.341][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:26.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.342][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.344][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:26.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:26.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.347][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:26.348][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:26.348][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.349][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.350][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:26.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:26.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.354][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:26.355][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:26.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.356][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.357][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:26.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:26.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.361][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:26.362][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:26.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.363][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.364][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:26.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:26.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.368][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:26.369][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:26.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.370][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.371][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:05:26.372][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:26.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.374][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.375][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-15 16:05:26.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:26.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.378][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.379][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.380][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.381][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.382][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.385][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:26.386][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:26.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.388][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.389][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:26.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:26.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.393][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:05:26.394][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:26.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.395][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.396][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-15 16:05:26.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:26.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.400][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:26.401][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:26.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.402][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.403][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:26.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:26.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.407][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.410][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:26.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:26.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.417][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:26.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:26.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:26.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:26.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:26.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:26.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.430][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:26.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:26.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:26.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:26.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:26.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:26.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:26.439][self$createEntryFromContent] Accession numbers: 88771.
biodb.TRACE[2025-03-15 16:05:26.440][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.444][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.447][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:26.450][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:26.450][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:26.451][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:26.456][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:26.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:26.458][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:26.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:26.459][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.463][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.466][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:26.469][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:26.470][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:26.471][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:26.476][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:26.477][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:26.477][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:26.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:26.479][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.482][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.486][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:26.489][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:05:26.490][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:26.491][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:26.492][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:26.497][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:26.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:26.498][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:26.499][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:26.500][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.503][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.507][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:26.508][private$selectFields]
biodb.TRACE[2025-03-15 16:05:26.509][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:26.509][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:26.510][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:26.511][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.512][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.514][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.515][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.516][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.517][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.518][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:26.519][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:26.520][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.521][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.522][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.523][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:05:26.524][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.528][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.531][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.534][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-03-15 16:05:26.535][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:26.536][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:26.537][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:26.542][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:26.543][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:26.543][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:26.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:26.545][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.549][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.563][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:26.564][private$selectFields]
biodb.TRACE[2025-03-15 16:05:26.566][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:26.567][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:26.567][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:26.568][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.569][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.571][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.572][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.573][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.574][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.575][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:26.576][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:26.577][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.578][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.579][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.580][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:05:26.581][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.585][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.588][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.591][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-03-15 16:05:26.592][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:26.593][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:26.594][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:26.598][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:26.599][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:26.600][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:26.601][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:26.602][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.605][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.608][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:26.609][private$selectFields]
biodb.TRACE[2025-03-15 16:05:26.610][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:26.611][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:26.611][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:26.612][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.613][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.614][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.615][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.616][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.617][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.618][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:26.619][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:26.620][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.621][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.622][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.623][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:05:26.624][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.627][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.630][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.633][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-03-15 16:05:26.634][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:05:26.635][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:05:26.637][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:26.637][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:26.638][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:26.643][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:26.644][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:26.644][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:26.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:26.647][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:05:26.650][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:05:26.651][cch$loadFileContent] Trying to load 1 files from cache: [1]: "a035d13a630066423fab6713592c5e52".
biodb.TRACE[2025-03-15 16:05:26.652][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:05:26.653][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.content".
biodb.DEBUG[2025-03-15 16:05:26.658][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:26.659][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:26.660][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:26.664][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:26.665][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:26.666][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:26.667][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:26.668][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.671][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.675][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:26.678][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:26.679][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:26.680][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:26.685][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:26.686][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:26.687][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:26.688][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:26.688][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.692][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.696][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:26.699][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:26.700][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:26.701][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:26.706][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:26.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:26.707][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:26.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:26.709][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.713][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.716][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:26.720][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:26.720][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:26.721][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:26.726][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:26.727][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:26.728][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:26.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:26.729][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.733][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.736][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:26.740][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:05:26.741][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:26.742][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:26.742][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:26.747][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:26.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:26.749][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:26.750][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:26.751][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.754][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.757][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:26.758][private$selectFields]
biodb.TRACE[2025-03-15 16:05:26.759][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:26.760][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:26.761][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:26.761][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.762][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.764][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.765][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.766][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.767][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.768][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:26.769][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:26.770][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.771][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.772][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.773][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:05:26.774][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.777][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.781][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.784][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-03-15 16:05:26.785][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:26.786][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:26.786][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:26.792][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:26.793][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:26.793][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:26.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:26.795][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.798][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.802][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:26.802][private$selectFields]
biodb.TRACE[2025-03-15 16:05:26.803][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:26.804][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:26.805][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:26.805][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.806][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.808][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.808][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.809][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.811][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.812][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:26.812][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:26.813][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.814][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.816][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.816][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:05:26.817][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.820][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.824][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.827][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-03-15 16:05:26.828][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:26.829][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:26.829][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:26.834][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:26.835][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:26.836][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:26.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:26.837][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.840][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.843][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:26.844][private$selectFields]
biodb.TRACE[2025-03-15 16:05:26.845][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:26.846][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:26.853][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:26.855][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.856][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.858][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.859][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.860][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.861][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.862][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:26.863][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:26.864][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.865][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.866][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.867][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:05:26.868][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.871][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.874][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:26.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.878][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-03-15 16:05:26.879][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:05:26.880][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:05:26.900][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:26.901][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:26.902][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:26.907][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:26.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:26.909][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:26.910][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:26.912][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:05:26.914][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:05:26.915][cch$loadFileContent] Trying to load 1 files from cache: [1]: "a035d13a630066423fab6713592c5e52".
biodb.TRACE[2025-03-15 16:05:26.917][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:05:26.918][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.content".
biodb.DEBUG[2025-03-15 16:05:26.922][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:26.923][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:26.924][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:26.929][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:26.930][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:26.931][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:26.931][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:26.933][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.936][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.940][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:26.943][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:26.944][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:26.945][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:26.950][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:26.951][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:26.951][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:26.952][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:26.953][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.957][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.960][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:26.964][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:26.965][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:26.965][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:26.970][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:26.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:26.972][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:26.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:26.974][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.977][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.981][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:26.984][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:26.985][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:26.986][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:26.991][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:26.992][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:26.993][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:26.993][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:26.994][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:26.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:26.998][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:26.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.001][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:27.004][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:27.005][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:27.006][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:27.011][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:27.012][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:27.012][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:27.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:27.014][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.018][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.021][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:27.025][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:27.025][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:27.026][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:27.031][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:27.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:27.033][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:27.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:27.035][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.038][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.041][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:27.045][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:27.045][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:27.046][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:27.051][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:27.052][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:27.053][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:27.053][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:27.055][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.058][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.062][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:27.065][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:05:27.067][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:27.067][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:27.068][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:27.073][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:27.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:27.075][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:27.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:27.076][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.080][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.083][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:27.084][private$selectFields]
biodb.TRACE[2025-03-15 16:05:27.085][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:27.085][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:27.086][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:27.087][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.088][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.089][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.090][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.091][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.093][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.093][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:27.094][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:27.095][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.096][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.097][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.098][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:05:27.099][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.102][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.105][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.109][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-03-15 16:05:27.110][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:27.110][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:27.111][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:27.116][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:27.117][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:27.118][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:27.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:27.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.123][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.126][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:27.127][private$selectFields]
biodb.TRACE[2025-03-15 16:05:27.128][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:27.128][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:27.129][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:27.130][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.131][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.132][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.133][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.134][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.135][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.136][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:27.137][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:27.138][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.139][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.140][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.141][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:05:27.142][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.145][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.148][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.160][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-03-15 16:05:27.162][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:27.163][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:27.163][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:27.169][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:27.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:27.171][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:27.172][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:27.173][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.176][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.179][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:27.180][private$selectFields]
biodb.TRACE[2025-03-15 16:05:27.181][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:27.181][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:27.182][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:27.183][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.184][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.185][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.185][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.186][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.187][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.188][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.189][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.190][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:27.190][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:27.191][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.192][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.193][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.194][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:05:27.195][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.198][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.205][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [34764].
biodb.DEBUG[2025-03-15 16:05:27.206][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:05:27.207][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:05:27.209][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:27.209][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:27.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:27.215][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:27.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:27.217][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:27.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:27.220][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:05:27.223][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:05:27.224][cch$loadFileContent] Trying to load 1 files from cache: [1]: "365d4ea5e0e90826806fec708da6c9ab".
biodb.TRACE[2025-03-15 16:05:27.225][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:05:27.226][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365d4ea5e0e90826806fec708da6c9ab.content".
biodb.DEBUG[2025-03-15 16:05:27.231][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:27.232][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:27.233][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:27.238][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:27.239][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:27.240][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:27.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:27.242][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.245][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.249][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:27.252][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:27.253][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:27.254][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:27.258][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:27.259][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:27.260][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:27.261][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:27.262][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.265][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.268][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:27.294][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:27.295][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:27.296][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:27.301][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:27.302][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:27.302][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:27.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:27.305][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.313][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.317][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:27.320][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:27.321][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:27.322][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:27.327][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:27.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:27.329][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:27.329][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:27.330][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.334][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.337][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:27.341][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:05:27.342][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:27.343][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:27.343][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:27.348][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:27.349][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:27.350][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:27.351][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:27.352][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.355][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.359][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:27.359][private$selectFields]
biodb.TRACE[2025-03-15 16:05:27.360][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:27.361][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:27.362][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:27.363][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.363][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.365][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.366][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.367][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.369][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.369][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:27.370][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:27.371][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.372][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.374][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.374][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:05:27.375][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.379][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.382][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.386][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [2535].
biodb.DEBUG[2025-03-15 16:05:27.386][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:27.387][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:27.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:27.393][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:27.394][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:27.395][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:27.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:27.397][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.400][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.403][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:27.404][private$selectFields]
biodb.TRACE[2025-03-15 16:05:27.405][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:27.406][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:27.407][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:27.408][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.409][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.410][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.411][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.412][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.413][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.414][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:27.415][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:27.416][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.417][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.419][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.419][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:05:27.420][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.424][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.427][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.431][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-03-15 16:05:27.432][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:27.432][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:27.433][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:27.438][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:27.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:27.440][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:27.440][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:27.441][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.445][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.448][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:27.449][private$selectFields]
biodb.TRACE[2025-03-15 16:05:27.450][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:27.450][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:27.451][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:27.452][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.453][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.454][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.455][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.456][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.458][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.459][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:27.459][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:27.460][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.461][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.463][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.463][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:05:27.464][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.468][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.471][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.475][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-03-15 16:05:27.475][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:05:27.484][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:05:27.486][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:27.487][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:27.488][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:27.493][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:27.494][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:27.495][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:27.496][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:27.498][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:05:27.501][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:05:27.503][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7b0416ab2d5cbf869f248000c039a8e8".
biodb.TRACE[2025-03-15 16:05:27.504][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:05:27.505][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7b0416ab2d5cbf869f248000c039a8e8.content".
biodb.DEBUG[2025-03-15 16:05:27.507][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:27.508][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:27.509][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:27.514][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:27.514][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:27.515][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:27.516][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:27.517][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.520][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.524][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:27.527][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:27.528][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:27.528][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:27.533][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:27.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:27.535][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:27.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:27.537][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.540][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.543][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:27.546][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:27.547][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:27.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:27.552][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:27.553][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:27.554][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:27.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:27.556][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.560][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.563][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:27.567][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:27.568][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:27.568][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:27.573][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:27.574][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:27.575][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:27.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:27.577][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.580][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.584][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:27.587][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:27.588][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:27.589][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:27.594][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:27.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:27.596][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:27.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:27.598][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.602][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.605][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:27.608][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:05:27.610][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:27.610][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:27.611][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:27.616][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:27.617][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:27.618][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:27.618][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:27.619][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.623][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.626][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:27.627][private$selectFields]
biodb.TRACE[2025-03-15 16:05:27.628][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:27.629][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:27.630][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:27.630][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.631][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.633][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.634][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.635][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.636][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.637][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:27.638][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:27.639][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.640][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.641][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.642][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:05:27.643][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.647][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.650][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.654][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [31303].
biodb.DEBUG[2025-03-15 16:05:27.655][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:27.655][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:27.656][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:27.661][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:27.662][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:27.663][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:27.664][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:27.665][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.668][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.672][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:27.673][private$selectFields]
biodb.TRACE[2025-03-15 16:05:27.674][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:27.674][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:27.675][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:27.676][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.677][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.678][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.679][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.680][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.682][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.682][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:27.683][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:27.684][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.685][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.687][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.688][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:05:27.689][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.692][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.695][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.699][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [81767].
biodb.DEBUG[2025-03-15 16:05:27.700][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:27.700][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:27.701][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:27.706][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:27.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:27.708][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:27.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:27.709][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.713][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.717][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:27.717][private$selectFields]
biodb.TRACE[2025-03-15 16:05:27.718][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:27.719][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:27.720][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:27.721][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.722][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.723][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.724][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.725][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.726][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.727][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:27.728][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:27.729][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.730][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.731][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.732][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:05:27.733][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.736][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.739][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.742][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [131378].
biodb.DEBUG[2025-03-15 16:05:27.743][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:05:27.744][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:05:27.764][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:27.765][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:27.766][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:27.770][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:27.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:27.772][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:27.773][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:27.775][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:05:27.777][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:05:27.779][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-03-15 16:05:27.780][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:05:27.781][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-03-15 16:05:27.790][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:05:27.794][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:05:27.795][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-03-15 16:05:27.796][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:05:27.797][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-03-15 16:05:27.800][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:27.801][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:27.801][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:27.806][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:27.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:27.808][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:27.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:27.810][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.813][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.816][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:27.819][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:27.820][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:27.821][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:27.825][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:27.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:27.827][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:27.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:27.829][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.832][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.835][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:27.839][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:27.839][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:27.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:27.845][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:27.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:27.847][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:27.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:27.849][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.852][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.855][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:27.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:27.858][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:05:27.860][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:27.860][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:27.861][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:27.866][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:27.867][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:27.867][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:27.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:27.869][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.872][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.876][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:27.877][private$selectFields]
biodb.TRACE[2025-03-15 16:05:27.877][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:27.878][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:27.879][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:27.880][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.881][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.882][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.883][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.884][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.885][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.886][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:27.887][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:27.888][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.888][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.890][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.891][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:05:27.892][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.895][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.898][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.902][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-03-15 16:05:27.903][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:27.904][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:27.904][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:27.910][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:27.911][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:27.911][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:27.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:27.913][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.917][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.920][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:27.921][private$selectFields]
biodb.TRACE[2025-03-15 16:05:27.922][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:27.923][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:27.923][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:27.924][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.925][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.927][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.928][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.928][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.930][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.931][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:27.932][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:27.933][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.934][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.936][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.936][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:05:27.937][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.941][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.944][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.948][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-03-15 16:05:27.949][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:27.950][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:27.951][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:27.956][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:27.957][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:27.957][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:27.958][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:27.959][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.967][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:27.967][private$selectFields]
biodb.TRACE[2025-03-15 16:05:27.968][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:27.969][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:27.970][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:27.970][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.971][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.973][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.974][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.975][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.976][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.977][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:27.978][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:27.979][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.980][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.981][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.982][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:05:27.983][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.986][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.989][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:27.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:27.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:27.993][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-03-15 16:05:27.993][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:05:27.994][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:05:27.996][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:27.997][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:27.997][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:28.003][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:28.003][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:28.004][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:28.005][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:28.007][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:05:28.010][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:05:28.011][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2025-03-15 16:05:28.012][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:05:28.013][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2025-03-15 16:05:28.016][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:28.016][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:28.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:28.022][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:28.023][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:28.024][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:28.025][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:28.026][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.029][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.032][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:28.036][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:28.037][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:28.038][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:28.043][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:28.043][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:28.044][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:28.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:28.046][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.049][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.053][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:28.057][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:28.057][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:28.058][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:28.063][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:28.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:28.065][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:28.065][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:28.066][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.070][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.073][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:28.076][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:05:28.077][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:28.078][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:28.078][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:28.091][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:28.092][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:28.093][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:28.093][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:28.094][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.097][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.100][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:28.101][private$selectFields]
biodb.TRACE[2025-03-15 16:05:28.102][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:28.103][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:28.103][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:28.104][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.105][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.107][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.107][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.108][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.110][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.110][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:28.111][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:28.112][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.113][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.114][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.115][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:05:28.116][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.119][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.122][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.126][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-03-15 16:05:28.127][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:28.127][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:28.128][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:28.133][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:28.134][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:28.134][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:28.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:28.136][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.139][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.142][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:28.143][private$selectFields]
biodb.TRACE[2025-03-15 16:05:28.144][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:28.144][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:28.145][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:28.146][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.147][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.149][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.149][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.150][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.151][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.152][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:28.153][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:28.154][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.155][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.156][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.157][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:05:28.158][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.161][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.164][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.168][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-03-15 16:05:28.168][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:28.169][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:28.170][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:28.175][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:28.175][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:28.176][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:28.177][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:28.178][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.185][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:28.185][private$selectFields]
biodb.TRACE[2025-03-15 16:05:28.186][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:28.187][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:28.188][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:28.188][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.189][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.191][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.192][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.193][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.194][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.195][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:28.196][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:28.196][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.197][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.199][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.200][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:05:28.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.204][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.207][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.211][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-03-15 16:05:28.212][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:05:28.213][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:05:28.214][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:28.215][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:28.216][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:28.221][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:28.222][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:28.223][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:28.223][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:28.226][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:05:28.228][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:05:28.230][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2025-03-15 16:05:28.231][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:05:28.232][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2025-03-15 16:05:28.234][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:28.235][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:28.236][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:28.241][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:28.241][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:28.242][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:28.243][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:28.244][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.247][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.250][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:28.254][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:28.254][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:28.255][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:28.260][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:28.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:28.262][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:28.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:28.264][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.267][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.270][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:28.274][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:28.274][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:28.275][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:28.280][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:28.281][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:28.282][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:28.282][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:28.283][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.287][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.290][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:28.293][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:05:28.295][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:28.296][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:28.296][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:28.302][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:28.303][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:28.303][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:28.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:28.305][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.309][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.312][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:28.313][private$selectFields]
biodb.TRACE[2025-03-15 16:05:28.313][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:28.314][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:28.315][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:28.316][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.317][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.318][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.319][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.320][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.322][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.322][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:28.323][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:28.324][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.325][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.326][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.327][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:05:28.328][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.331][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.335][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.338][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-03-15 16:05:28.339][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:28.340][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:28.340][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:28.345][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:28.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:28.347][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:28.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:28.348][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.352][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.355][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:28.355][private$selectFields]
biodb.TRACE[2025-03-15 16:05:28.356][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:28.357][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:28.358][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:28.358][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.359][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.361][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.361][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.362][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.364][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.365][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:28.366][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:28.366][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.374][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.376][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.377][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:05:28.378][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.382][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.385][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.389][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-03-15 16:05:28.390][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:28.390][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:28.391][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:28.396][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:28.397][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:28.398][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:28.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:28.399][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.402][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.406][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:28.406][private$selectFields]
biodb.TRACE[2025-03-15 16:05:28.407][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:28.408][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:28.408][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:28.409][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.410][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.411][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.412][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.413][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.414][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.415][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:28.416][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:28.416][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.417][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.419][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.420][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:05:28.421][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.423][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.426][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.430][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2025-03-15 16:05:28.431][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:05:28.431][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:05:28.451][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:28.464][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:28.465][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:28.470][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:28.471][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:28.472][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:28.473][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:28.475][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:05:28.478][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:05:28.479][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26eec570aadd234892b573eb0777bd78".
biodb.TRACE[2025-03-15 16:05:28.480][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:05:28.481][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26eec570aadd234892b573eb0777bd78.content".
biodb.DEBUG[2025-03-15 16:05:28.484][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:28.485][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:28.487][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:28.492][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:28.493][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:28.494][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:28.494][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:28.495][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.499][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.502][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:28.506][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:28.507][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:28.507][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:28.512][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:28.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:28.513][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:28.514][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:28.515][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.519][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.522][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:28.526][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:28.526][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:28.527][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:28.532][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:28.533][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:28.534][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:28.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:28.535][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.538][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.542][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:28.546][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:28.546][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:28.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:28.552][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:28.553][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:28.554][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:28.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:28.556][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.559][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.562][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:28.566][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:28.566][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:28.567][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:28.572][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:28.573][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:28.574][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:28.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:28.575][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.579][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.582][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:28.585][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:28.586][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:28.587][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:28.591][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:28.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:28.593][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:28.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:28.595][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.598][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.602][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:28.605][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:28.606][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:28.607][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:28.612][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:28.613][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:28.613][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:28.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:28.615][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.619][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.623][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:28.626][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:28.627][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:28.628][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:28.633][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:28.634][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:28.634][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:28.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:28.636][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.639][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.643][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:28.646][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:05:28.648][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:28.649][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:28.649][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:28.654][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:28.655][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:28.656][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:28.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:28.657][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.661][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.664][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:28.665][private$selectFields]
biodb.TRACE[2025-03-15 16:05:28.666][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:28.666][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:28.667][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:28.668][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.669][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.670][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.671][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.672][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.674][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.674][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:28.675][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:28.676][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.677][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.678][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.679][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:05:28.680][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.692][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.696][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.699][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-03-15 16:05:28.700][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:28.701][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:28.702][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:28.707][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:28.708][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:28.709][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:28.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:28.710][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.714][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.717][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:28.718][private$selectFields]
biodb.TRACE[2025-03-15 16:05:28.719][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:28.719][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:28.720][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:28.721][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.722][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.723][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.724][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.725][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.726][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.727][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:28.728][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:28.729][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.730][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.731][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.732][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:05:28.733][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.736][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.740][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.743][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-03-15 16:05:28.744][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:28.745][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:28.745][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:28.750][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:28.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:28.752][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:28.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:28.754][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.757][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.760][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:28.761][private$selectFields]
biodb.TRACE[2025-03-15 16:05:28.762][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:28.763][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:28.764][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:28.764][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.765][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.767][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.768][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.769][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.770][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.771][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:28.772][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:28.773][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.774][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.775][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.776][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:05:28.777][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.780][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.783][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:28.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.787][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-03-15 16:05:28.787][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:05:28.788][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:05:28.790][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:28.791][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:28.791][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:28.796][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:28.797][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:28.798][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:28.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:28.801][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:05:28.804][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:05:28.805][cch$loadFileContent] Trying to load 1 files from cache: [1]: "20c224089a82bbffabd2e7dbc67cfae3".
biodb.TRACE[2025-03-15 16:05:28.806][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:05:28.807][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/20c224089a82bbffabd2e7dbc67cfae3.content".
biodb.DEBUG[2025-03-15 16:05:28.812][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:28.813][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:28.814][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:28.819][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:28.820][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:28.821][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:28.821][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:28.822][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.826][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.830][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:28.834][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:28.834][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:28.835][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:28.840][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:28.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:28.842][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:28.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:28.844][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.847][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.850][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:28.854][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:28.855][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:28.855][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:28.860][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:28.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:28.862][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:28.863][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:28.864][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.868][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.871][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:28.874][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:28.875][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:28.876][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:28.881][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:28.882][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:28.883][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:28.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:28.884][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.888][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.891][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:28.894][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:28.895][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:28.896][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:28.900][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:28.901][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:28.902][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:28.903][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:28.904][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.907][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.911][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:28.914][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:28.915][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:28.915][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:28.921][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:28.922][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:28.922][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:28.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:28.924][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.927][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.930][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:28.934][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:28.934][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:28.935][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:28.940][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:28.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:28.942][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:28.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:28.944][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.947][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.950][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:28.953][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:28.954][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:28.955][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:28.960][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:28.960][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:28.961][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:28.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:28.963][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.966][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.969][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:28.972][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:28.973][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:28.974][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:28.986][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:28.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:28.989][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:28.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:28.991][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.995][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:28.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:28.998][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:28.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:29.001][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:29.002][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:29.003][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:29.008][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:29.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:29.009][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:29.010][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:29.011][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.014][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.018][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:29.021][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:29.022][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:29.023][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:29.028][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:29.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:29.030][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:29.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:29.032][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.035][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.038][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:29.042][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:29.042][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:29.043][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:29.048][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:29.049][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:29.051][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:29.051][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:29.053][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.056][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.060][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:29.063][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:29.064][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:29.064][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:29.070][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:29.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:29.072][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:29.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:29.074][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.077][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.080][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:29.084][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:29.084][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:29.085][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:29.091][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:29.092][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:29.092][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:29.093][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:29.094][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.097][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.101][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:29.104][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:29.105][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:29.105][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:29.110][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:29.111][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:29.112][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:29.113][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:29.114][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.117][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.121][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:29.124][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:29.125][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:29.126][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:29.130][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:29.131][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:29.132][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:29.133][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:29.134][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.137][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.141][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:29.144][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:29.145][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:29.145][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:29.150][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:29.151][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:29.152][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:29.153][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:29.154][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.157][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.161][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:29.164][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:29.165][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:29.166][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:29.171][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:29.172][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:29.172][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:29.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:29.174][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.178][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.181][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:29.185][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:29.185][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:29.186][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:29.191][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:29.192][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:29.193][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:29.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:29.194][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.198][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.201][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:29.205][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:29.205][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:29.206][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:29.211][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:29.212][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:29.213][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:29.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:29.215][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.218][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.221][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:29.225][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:29.226][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:29.227][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:29.231][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:29.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:29.233][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:29.234][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:29.235][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.238][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.241][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:29.245][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:29.245][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:29.246][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:29.251][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:29.252][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:29.253][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:29.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:29.255][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.258][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.261][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:29.265][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:29.266][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:29.266][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:29.271][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:29.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:29.273][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:29.274][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:29.275][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.278][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.282][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:29.285][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:29.293][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:29.294][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:29.300][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:29.300][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:29.301][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:29.302][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:29.303][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.307][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.310][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:29.313][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:29.314][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:29.315][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:29.319][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:29.320][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:29.321][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:29.322][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:29.323][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.326][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.329][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:29.332][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:29.333][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:29.334][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:29.338][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:29.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:29.340][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:29.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:29.342][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.345][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.348][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:29.352][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:29.352][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:29.353][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:29.358][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:29.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:29.360][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:29.360][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:29.361][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.364][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.368][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:29.371][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:29.372][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:29.373][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:29.378][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:29.378][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:29.379][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:29.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:29.381][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.384][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.387][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:29.390][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:29.391][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:29.392][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:29.397][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:29.398][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:29.399][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:29.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:29.400][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.404][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.407][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:29.411][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:29.411][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:29.412][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:29.417][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:29.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:29.418][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:29.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:29.420][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.424][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.427][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:29.430][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:05:29.432][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:29.432][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:29.433][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:29.438][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:29.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:29.440][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:29.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:29.442][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.445][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.448][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:29.449][private$selectFields]
biodb.TRACE[2025-03-15 16:05:29.450][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:29.450][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:29.451][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:29.452][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.453][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.455][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.456][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.457][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.458][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.459][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:29.460][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:29.461][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.462][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.463][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.464][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:05:29.465][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.468][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.471][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.475][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-03-15 16:05:29.475][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:29.476][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:29.477][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:29.482][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:29.483][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:29.484][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:29.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:29.485][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.492][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:29.492][private$selectFields]
biodb.TRACE[2025-03-15 16:05:29.493][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:29.494][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:29.495][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:29.496][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.497][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.498][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.499][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.500][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.501][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.502][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:29.503][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:29.504][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.505][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.506][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.507][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:05:29.508][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.511][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.515][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.518][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-03-15 16:05:29.519][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:29.520][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:29.520][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:29.525][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:29.526][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:29.527][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:29.528][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:29.529][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.532][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.536][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:29.536][private$selectFields]
biodb.TRACE[2025-03-15 16:05:29.537][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:29.538][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:29.539][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:29.539][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.540][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.542][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.543][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.543][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.545][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.546][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:29.547][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:29.547][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.548][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.550][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.550][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:05:29.551][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.554][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.558][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.561][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-03-15 16:05:29.562][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:05:29.562][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:05:29.564][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:29.565][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:29.566][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:29.571][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:29.572][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:29.573][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:29.573][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:29.575][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:05:29.585][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:05:29.587][cch$loadFileContent] Trying to load 1 files from cache: [1]: "a035d13a630066423fab6713592c5e52".
biodb.TRACE[2025-03-15 16:05:29.588][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:05:29.590][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.content".
biodb.DEBUG[2025-03-15 16:05:29.595][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:29.596][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:29.596][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:29.601][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:29.602][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:29.603][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:29.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:29.605][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.608][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.611][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:29.614][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:29.615][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:29.616][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:29.621][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:29.622][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:29.622][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:29.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:29.624][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.627][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.631][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:29.634][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:29.635][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:29.636][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:29.640][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:29.641][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:29.642][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:29.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:29.644][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.647][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.650][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:29.654][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:29.654][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:29.655][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:29.660][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:29.675][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:29.676][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:29.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:29.678][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.681][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.685][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:29.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:29.689][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:05:29.693][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:29.695][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:29.697][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:29.702][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:29.702][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:29.703][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:29.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:29.705][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.708][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.712][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:29.713][private$selectFields]
biodb.TRACE[2025-03-15 16:05:29.713][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:29.714][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:29.715][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:29.716][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.717][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.718][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.719][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.720][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.721][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.722][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:29.723][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:29.724][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.725][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.726][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.727][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:05:29.728][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.731][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.735][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.738][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-03-15 16:05:29.739][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:29.740][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:29.741][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:29.746][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:29.747][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:29.748][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:29.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:29.750][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.753][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.756][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:29.757][private$selectFields]
biodb.TRACE[2025-03-15 16:05:29.758][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:29.759][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:29.759][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:29.760][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.761][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.763][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.763][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.764][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.766][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.766][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:29.767][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:29.768][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.769][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.770][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.771][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:05:29.772][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.775][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.781][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-03-15 16:05:29.782][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:29.783][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:29.784][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:29.788][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:29.789][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:29.790][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:29.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:29.791][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.794][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.797][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:29.798][private$selectFields]
biodb.TRACE[2025-03-15 16:05:29.799][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:29.799][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:29.800][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:29.801][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.802][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.803][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.804][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.804][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.806][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.807][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:29.807][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-15 16:05:29.808][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.809][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.811][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.811][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-15 16:05:29.812][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.815][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.818][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:29.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.822][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-03-15 16:05:29.823][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:05:29.823][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-03-15 16:05:29.841][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-03-15 16:05:29.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-03-15 16:05:29.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.844][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-03-15 16:05:29.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-03-15 16:05:29.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.848][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-03-15 16:05:29.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-03-15 16:05:29.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-15 16:05:29.855][biodb::testThat]
biodb.INFO [2025-03-15 16:05:29.855][biodb::testThat] Running test function test_annotateMzValues_additional_fields (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2025-03-15 16:05:29.856][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-15 16:05:29.857][biodb::testThat]
biodb.TRACE[2025-03-15 16:05:29.860][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-15 16:05:29.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-15 16:05:29.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.863][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-15 16:05:29.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-15 16:05:29.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.866][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-15 16:05:29.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-15 16:05:29.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.869][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:29.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:29.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.872][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:29.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:29.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.875][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:29.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:29.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.878][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:29.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:29.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.881][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:29.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:29.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.891][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:29.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:29.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.896][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:29.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:29.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.899][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:29.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:29.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.902][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:29.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:29.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.906][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:29.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:29.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.909][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:29.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:29.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.912][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:29.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:29.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:29.917][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:29.918][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:29.918][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:29.923][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:29.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:29.925][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:29.925][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:29.927][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:05:29.930][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:05:29.931][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-03-15 16:05:29.932][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:05:29.933][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-03-15 16:05:29.935][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:29.936][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:29.936][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:29.941][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:29.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:29.942][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:29.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:29.944][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:29.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:29.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.947][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:29.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:29.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.951][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:29.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:29.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:29.955][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:05:29.957][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:05:29.958][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-03-15 16:05:29.959][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:05:29.960][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-03-15 16:05:29.962][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:29.963][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:29.964][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:29.969][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:29.969][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:29.970][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:29.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:29.972][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:29.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:29.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.975][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:29.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:29.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.978][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:29.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:29.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:29.981][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:29.982][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:29.983][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:29.988][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:29.989][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:29.989][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:29.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:29.991][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:29.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:29.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.994][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:29.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:29.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:29.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:29.997][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:29.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:29.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:30.001][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:05:30.002][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:30.003][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:30.004][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:30.008][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:30.009][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:30.010][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:30.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:30.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:30.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:30.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:30.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:30.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.019][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:30.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:30.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.022][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:30.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:30.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.025][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:30.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:30.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.029][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:30.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:30.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.032][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:30.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:30.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.035][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:30.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:30.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.039][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:30.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:30.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.042][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:30.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:30.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.045][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:30.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:30.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.048][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:30.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:30.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.051][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:30.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:30.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.055][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:30.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:30.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.058][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:30.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:30.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.061][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:30.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:30.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.064][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:30.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:30.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.067][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:30.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:30.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.071][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:30.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:30.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.074][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:30.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:30.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.077][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:30.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:30.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.080][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:30.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:30.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.083][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:30.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:30.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.086][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:30.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:30.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.090][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:30.091][private$selectFields]
biodb.TRACE[2025-03-15 16:05:30.091][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:30.092][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:30.093][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:30.094][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:30.095][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:30.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.096][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.097][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:30.098][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:30.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.099][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.100][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:30.101][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:30.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.102][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.103][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:30.104][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:30.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.106][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.106][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:30.107][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:30.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.109][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.110][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:30.110][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:30.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.112][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.113][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:30.113][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:30.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.115][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.116][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:30.116][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:30.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.118][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.119][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:30.119][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:30.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.121][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.122][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:30.123][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:30.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.124][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.125][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:30.125][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:30.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.127][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.128][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:30.128][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:30.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.130][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.130][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:30.131][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:30.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.133][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.134][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:30.134][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:30.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.136][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.137][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:30.138][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:30.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.139][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.140][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:30.141][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:30.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.142][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.143][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:30.144][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:30.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.145][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.146][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:30.147][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:30.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.148][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.149][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:30.150][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:30.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.151][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.152][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:30.153][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:30.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.154][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.155][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:30.156][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:30.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.157][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.158][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:30.159][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:30.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.167][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.168][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:30.169][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:30.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.171][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.172][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:30.172][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:30.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.174][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.175][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-03-15 16:05:30.176][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-03-15 16:05:30.176][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:30.177][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:30.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.179][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.180][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:30.180][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:30.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.182][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.183][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:30.183][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:30.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.185][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.186][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:30.186][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:30.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.188][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.189][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:30.190][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:30.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.191][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.192][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:30.192][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:30.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.194][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.195][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:30.196][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:30.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.197][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.198][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:30.199][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:30.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.200][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.201][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:30.201][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:30.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.203][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.204][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:30.204][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:30.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.206][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.207][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:30.207][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:30.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.209][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.210][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-03-15 16:05:30.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:30.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:30.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:30.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:30.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:30.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:30.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.220][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:30.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:30.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.223][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:30.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:30.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.226][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:30.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:30.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.230][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:30.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:30.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.233][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:30.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:30.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.236][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:30.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:30.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.239][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:30.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:30.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.242][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:30.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:30.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.246][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:30.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:30.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.249][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:30.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:30.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.252][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:30.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:30.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.256][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:30.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:30.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.259][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:30.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:30.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.262][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:30.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:30.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.265][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:30.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:30.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.269][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:30.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:30.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.272][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:30.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:30.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.275][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:30.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:30.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.279][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:30.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:30.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.282][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:30.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:30.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.285][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:30.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:30.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.289][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:30.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:30.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.292][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:30.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:30.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.295][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:30.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:30.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.298][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:30.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:30.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.302][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:30.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:30.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.305][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:30.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:30.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.308][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:30.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:30.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.311][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:30.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:30.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.315][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:30.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:30.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.323][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [192288, 0, 192288, C27H54O2, InChI=1S/C27H54O2/c1-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-24-25-26-27(28)29-2/h3-26H2,1-2H3, ...].
biodb.DEBUG[2025-03-15 16:05:30.324][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:30.325][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:30.326][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:30.330][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:30.331][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:30.332][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:30.333][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:30.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:30.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:30.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:30.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:30.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.340][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:30.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:30.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.344][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:30.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:30.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.347][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:30.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:30.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.350][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:30.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:30.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.353][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:30.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:30.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.356][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:30.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:30.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.360][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:30.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:30.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.363][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:30.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:30.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.366][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:30.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:30.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.369][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:30.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:30.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.372][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:30.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:30.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.375][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:30.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:30.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.378][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:30.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:30.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.382][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:30.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:30.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.385][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:30.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:30.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.388][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:30.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:30.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.391][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:30.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:30.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.395][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:30.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:30.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.398][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:30.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:30.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.401][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:30.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:30.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.404][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:30.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:30.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.407][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:30.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:30.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.410][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:30.411][private$selectFields]
biodb.TRACE[2025-03-15 16:05:30.411][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:30.412][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:30.413][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:30.414][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:30.414][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:30.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.416][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.417][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:30.418][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:30.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.419][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.420][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:30.420][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:30.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.422][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.423][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:30.424][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:30.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.432][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.433][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:30.434][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:30.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.436][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.436][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:30.437][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:30.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.439][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.439][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:30.440][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:30.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.442][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.443][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:30.443][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:30.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.445][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.446][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:30.446][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:30.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.448][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.449][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:30.449][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:30.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.451][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.451][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:30.452][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:30.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.454][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.455][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:30.455][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:30.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.457][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.458][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:30.458][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:30.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.460][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.460][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:30.461][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:30.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.463][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.463][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:30.464][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:30.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.466][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.466][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:30.467][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:30.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.469][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.469][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:30.470][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:30.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.472][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.472][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:30.473][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:30.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.475][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.476][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:30.476][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:30.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.478][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.479][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:30.479][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:30.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.481][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.482][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:30.482][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:30.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.484][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.485][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:30.486][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:30.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.487][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.488][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:30.489][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:30.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.490][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.491][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:30.492][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:30.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.493][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.494][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:30.495][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:30.495][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:30.496][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:30.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.498][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.498][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:30.499][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:30.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.501][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.502][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:30.502][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:30.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.504][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.504][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:30.505][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:30.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.507][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.508][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:30.508][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:30.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.510][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.511][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:30.512][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:30.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.513][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.514][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:30.515][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:30.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.516][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.517][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:30.518][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:30.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.520][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.520][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:30.521][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:30.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.523][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.523][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:30.524][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:30.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.526][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.527][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:30.527][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:30.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.529][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.530][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:30.530][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:30.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.532][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.533][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-03-15 16:05:30.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:30.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:30.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:30.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:30.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:30.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:30.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.543][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:30.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:30.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.546][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:30.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:30.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.549][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:30.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:30.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.552][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:30.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:30.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.555][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:30.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:30.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.559][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:30.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:30.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.562][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:30.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:30.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.565][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:30.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:30.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.568][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:30.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:30.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.571][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:30.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:30.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.574][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:30.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:30.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.577][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:30.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:30.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.580][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:30.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:30.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.583][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:30.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:30.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.586][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:30.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:30.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.590][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:30.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:30.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.592][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:30.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:30.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.595][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:30.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:30.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.599][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:30.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:30.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.602][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:30.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:30.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.605][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:30.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:30.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.608][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:30.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:30.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.611][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:30.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:30.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.614][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:30.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:30.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.618][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:30.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:30.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.621][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:30.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:30.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.624][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:30.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:30.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.627][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:30.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:30.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.630][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:30.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:30.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.633][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:30.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:30.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.636][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:30.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:30.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.640][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:30.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:30.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.642][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:30.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:30.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.650][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2025-03-15 16:05:30.651][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:30.652][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:30.652][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:30.657][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:30.658][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:30.658][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:30.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:30.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:30.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:30.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:30.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:30.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.667][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:30.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:30.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.670][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:30.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:30.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.673][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:30.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:30.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.676][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:30.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:30.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.679][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:30.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:30.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.854][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:30.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:30.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.857][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:30.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:30.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.860][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:30.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:30.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.863][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:30.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:30.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.867][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:30.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:30.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.870][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:30.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:30.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.873][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:30.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:30.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.876][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:30.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:30.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.879][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:30.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:30.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.882][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:30.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:30.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.886][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:30.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:30.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.889][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:30.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:30.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.892][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:30.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:30.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.895][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:30.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:30.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.898][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:30.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:30.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.901][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:30.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:30.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.904][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:30.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:30.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.907][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:30.908][private$selectFields]
biodb.TRACE[2025-03-15 16:05:30.909][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:30.909][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:30.910][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:30.911][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:30.912][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:30.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.913][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.914][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:30.915][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:30.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.916][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.917][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:30.918][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:30.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.919][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.920][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:30.921][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:30.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.922][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.923][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:30.924][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:30.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.925][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.926][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:30.927][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:30.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.928][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.929][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:30.930][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:30.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.932][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.932][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:30.933][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:30.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.935][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.935][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:30.936][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:30.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.938][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.939][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:30.940][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:30.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.941][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.942][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:30.943][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:30.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.944][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.945][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:30.946][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:30.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.948][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.948][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:30.949][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:30.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.950][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.951][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:30.952][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:30.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.954][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.954][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:30.955][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:30.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.957][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.957][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:30.958][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:30.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.960][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.961][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:30.962][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:30.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.963][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.964][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:30.965][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:30.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.966][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.967][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:30.968][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:30.969][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.970][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.970][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:30.971][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:30.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.973][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.974][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:30.975][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:30.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.976][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.977][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:30.978][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:30.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.979][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.980][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:30.981][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:30.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.983][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.983][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:30.984][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:30.985][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.986][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.987][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-03-15 16:05:30.988][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-03-15 16:05:30.988][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:30.989][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:30.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.991][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.992][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:30.993][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:30.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.994][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.995][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:30.996][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:30.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:30.998][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:30.999][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:31.000][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:31.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.001][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.002][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:31.003][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:31.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.004][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.005][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:31.006][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:31.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.007][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.008][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.009][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.011][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.012][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:31.013][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:31.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.014][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.015][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:31.016][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:31.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.018][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.019][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:31.020][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:31.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.022][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.022][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:31.023][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:31.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.025][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.026][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-03-15 16:05:31.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:31.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:31.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.030][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:31.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:31.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:31.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:31.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.036][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:31.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:31.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.040][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:31.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:31.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.043][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:31.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:31.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:31.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:31.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.049][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:31.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:31.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.052][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:31.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:31.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.056][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:31.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:31.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.059][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:31.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:31.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.062][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:31.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:31.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.065][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:31.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:31.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.069][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:31.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:31.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.072][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:31.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:31.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.075][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:31.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:31.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.078][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:31.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:31.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.082][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:31.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:31.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.086][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.089][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.093][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.096][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:31.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:31.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.099][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:31.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:31.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.102][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:31.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:31.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.106][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:31.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:31.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.109][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:31.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:31.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.112][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:31.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:31.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.115][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:31.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:31.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.118][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:31.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:31.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.122][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:31.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:31.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.129][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:31.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:31.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.133][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:31.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:31.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.136][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:31.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:31.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.143][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [209892, 0, 209892, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-30(8)25-13-14-26-27(4,5)17-10-18-28(26,6)24(25)16-20-29(23,30)7/h11,13,22-24,26H,9-10,12,14-20H2,1-8H3/t22-,23+,24+,26+,28-,29+,30-/m1/s1, ...].
biodb.DEBUG[2025-03-15 16:05:31.144][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:05:31.145][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:05:31.148][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:31.149][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:31.149][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:31.154][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:31.155][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:31.156][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:31.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:31.159][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:05:31.161][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:05:31.163][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2025-03-15 16:05:31.164][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:05:31.165][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2025-03-15 16:05:31.167][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:31.167][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:31.168][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:31.173][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:31.174][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:31.175][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:31.175][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:31.176][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.179][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.182][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:31.185][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:31.186][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:31.187][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:31.192][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:31.192][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:31.193][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:31.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:31.194][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.198][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.201][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:31.204][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:05:31.206][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:05:31.207][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2025-03-15 16:05:31.208][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:05:31.210][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2025-03-15 16:05:31.212][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:31.213][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:31.213][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:31.218][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:31.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:31.220][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:31.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:31.221][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.224][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.227][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:31.230][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:31.231][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:31.231][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:31.236][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:31.237][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:31.238][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:31.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:31.240][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.243][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.246][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:31.249][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:31.250][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:31.250][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:31.255][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:31.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:31.257][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:31.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:31.258][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.262][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.265][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:31.268][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:05:31.269][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:31.270][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:31.271][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:31.276][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:31.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:31.277][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:31.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:31.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:31.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:31.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:31.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:31.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.286][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:31.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:31.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.289][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:31.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:31.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.292][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:31.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:31.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:31.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:31.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.299][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:31.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:31.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.302][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:31.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:31.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.305][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:31.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:31.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.308][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:31.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:31.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.312][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:31.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:31.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.315][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:31.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:31.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.318][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:31.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:31.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.321][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:31.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:31.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.324][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.327][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.330][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:31.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:31.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.334][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:31.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:31.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.337][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:31.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:31.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.340][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:31.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:31.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.344][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:31.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:31.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.347][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:31.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:31.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.351][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:31.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:31.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.354][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:31.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:31.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.357][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:31.358][private$selectFields]
biodb.TRACE[2025-03-15 16:05:31.359][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:31.360][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:31.360][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:31.361][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:31.362][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:31.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.364][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.365][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:31.365][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:31.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.367][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.367][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:31.368][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:31.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.370][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.370][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:31.371][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:31.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.373][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.374][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:31.375][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:31.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.376][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.377][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:31.378][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:31.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.379][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.380][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:31.381][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:31.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.383][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.383][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.384][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.386][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.386][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:31.387][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:31.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.389][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.389][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:31.390][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:31.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.391][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.392][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:31.393][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:31.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.395][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.396][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:31.397][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:31.397][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.398][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.399][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:31.400][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:31.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.401][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.402][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:31.403][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:31.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.405][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.406][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:31.406][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:31.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.408][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.409][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:31.410][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:31.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.416][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.417][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:31.418][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:31.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.419][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.420][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:31.421][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:31.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.423][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.424][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:31.424][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:31.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.426][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.427][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.427][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.429][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.430][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:31.430][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:31.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.432][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.433][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:31.434][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:31.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.435][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.436][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:31.437][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:31.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.438][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.439][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:31.440][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:31.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.441][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.442][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:31.443][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:31.444][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:31.444][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:31.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.446][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.446][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:31.447][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:31.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.449][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.449][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:31.450][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:31.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.452][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.453][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:31.453][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:31.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.455][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.455][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:31.456][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:31.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.458][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.458][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:31.459][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:31.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.461][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.461][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:31.462][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:31.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.464][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.465][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.465][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.467][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.468][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:31.469][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:31.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.470][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.471][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:31.472][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:31.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.473][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.474][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:31.475][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:31.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.476][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.477][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:31.478][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:31.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.479][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.480][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-03-15 16:05:31.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:31.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:31.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:31.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:31.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:31.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:31.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.491][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:31.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:31.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.494][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:31.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:31.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.498][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:31.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:31.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.501][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:31.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:31.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.504][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:31.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:31.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.507][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:31.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:31.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.510][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:31.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:31.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.513][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:31.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:31.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.516][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:31.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:31.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.520][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:31.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:31.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.523][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:31.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:31.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.526][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:31.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:31.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.529][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:31.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:31.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.532][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:31.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:31.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.535][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:31.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:31.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.538][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:31.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:31.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.541][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:31.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:31.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.544][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:31.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:31.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.548][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.551][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.555][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.558][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:31.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:31.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.561][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:31.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:31.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.565][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:31.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:31.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.568][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:31.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:31.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.571][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:31.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:31.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.574][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:31.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:31.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.578][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:31.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:31.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.581][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:31.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:31.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.584][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:31.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:31.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.588][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:31.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:31.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.591][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:31.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:31.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.594][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:31.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:31.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.603][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2025-03-15 16:05:31.604][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:31.605][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:31.605][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:31.610][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:31.611][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:31.612][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:31.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:31.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:31.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:31.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:31.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:31.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.620][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:31.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:31.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.624][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:31.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:31.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.627][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:31.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:31.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.631][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:31.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:31.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.634][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:31.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:31.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.638][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:31.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:31.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.641][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:31.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:31.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.645][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:31.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:31.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.648][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:31.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:31.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.651][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:31.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:31.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.655][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:31.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:31.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.658][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:31.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:31.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.662][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.665][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.669][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:31.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:31.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.672][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:31.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:31.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.675][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:31.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:31.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.678][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:31.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:31.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.681][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:31.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:31.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.685][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:31.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:31.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.688][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:31.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:31.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.695][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:31.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:31.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.699][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:31.699][private$selectFields]
biodb.TRACE[2025-03-15 16:05:31.700][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:31.701][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:31.702][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:31.702][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:31.703][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:31.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.705][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.705][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:31.706][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:31.707][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.708][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.709][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:31.709][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:31.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.711][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.712][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:31.712][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:31.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.714][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.715][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:31.715][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:31.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.717][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.717][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:31.718][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:31.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.720][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.720][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:31.721][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:31.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.723][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.723][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.724][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.726][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.727][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:31.727][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:31.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.729][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.730][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:31.731][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:31.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.732][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.733][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:31.734][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:31.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.736][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.736][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:31.737][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:31.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.739][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.740][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:31.740][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:31.741][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.742][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.743][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:31.744][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:31.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.745][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.746][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:31.747][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:31.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.748][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.749][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:31.750][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:31.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.751][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.752][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:31.753][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:31.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.754][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.755][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:31.756][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:31.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.757][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.758][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:31.759][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:31.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.760][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.761][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.762][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.763][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.764][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:31.765][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:31.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.766][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.767][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:31.768][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:31.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.769][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.770][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:31.771][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:31.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.772][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.773][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:31.774][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:31.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.775][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.776][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:31.777][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:31.778][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:31.779][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:31.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.780][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.781][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:31.782][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:31.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.783][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.784][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:31.785][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:31.786][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.787][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.787][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:31.788][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:31.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.790][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.790][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:31.791][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:31.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.793][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.794][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:31.795][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:31.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.796][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.797][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:31.798][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:31.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.799][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.800][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.801][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.802][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.803][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:31.804][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:31.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.805][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.806][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:31.807][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:31.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.809][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.810][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:31.811][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:31.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.812][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.813][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:31.814][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:31.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.815][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.816][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-03-15 16:05:31.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:31.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:31.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:31.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:31.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.824][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:31.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:31.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.827][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:31.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:31.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.831][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:31.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:31.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.834][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:31.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:31.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.837][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:31.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:31.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.841][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:31.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:31.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.844][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:31.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:31.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.847][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:31.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:31.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.851][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:31.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:31.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.854][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:31.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:31.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.857][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:31.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:31.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.860][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:31.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:31.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.864][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:31.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:31.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.867][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:31.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:31.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.870][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:31.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:31.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.873][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:31.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:31.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.876][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:31.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:31.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.879][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:31.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:31.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.882][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:31.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:31.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.885][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.889][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.892][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:31.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.895][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:31.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:31.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.899][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:31.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:31.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.902][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:31.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:31.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.905][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:31.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:31.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.909][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:31.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:31.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.912][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:31.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:31.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.915][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:31.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:31.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.919][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:31.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:31.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.922][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:31.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:31.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.926][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:31.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:31.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.929][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:31.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:31.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.933][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:31.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:31.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.941][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [16587, 0, 16587, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)9-8-22(31)26(5,33)21-7-11-27(34)16-12-18(28)17-13-19(29)20(30)14-24(17,3)15(16)6-10-25(21,27)4/h12,15,17,19-22,29-34H,6-11,13-14H2,1-5H3/t15-,17-,19+,20-,21-,22+,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2025-03-15 16:05:31.942][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:31.943][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:31.944][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:31.948][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:31.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:31.950][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:31.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:31.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:31.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:31.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:31.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:31.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.959][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:31.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:31.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.962][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:31.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:31.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.965][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:31.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:31.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.973][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:31.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:31.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.977][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:31.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:31.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.980][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:31.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:31.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.983][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:31.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:31.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.986][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:31.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:31.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.990][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:31.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:31.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:31.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:31.993][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:31.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:32.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.012][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:32.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:32.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.015][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:32.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:32.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.018][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.021][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.028][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:32.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:32.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.035][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:32.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:32.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.038][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:32.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:32.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.041][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:32.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:32.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.044][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:32.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:32.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.047][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:32.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:32.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.051][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:32.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:32.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.054][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:32.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:32.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.057][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:32.057][private$selectFields]
biodb.TRACE[2025-03-15 16:05:32.058][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:32.059][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:32.060][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:32.060][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:32.061][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:32.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.062][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.063][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:32.064][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:32.065][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.065][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.066][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:32.067][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:32.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.068][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.069][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:32.070][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:32.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.072][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.073][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:32.073][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:32.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.075][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.076][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:32.077][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:32.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.078][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.079][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:32.080][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:32.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.081][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.082][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.083][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.084][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.085][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:32.086][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:32.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.088][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.088][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:32.089][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:32.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.091][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.092][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:32.093][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:32.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.094][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.095][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:32.096][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:32.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.097][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.098][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:32.099][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:32.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.100][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.101][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:32.102][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:32.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.103][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.104][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:32.105][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:32.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.107][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.107][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:32.109][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:32.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.110][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.111][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:32.112][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:32.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.113][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.114][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:32.115][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:32.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.117][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.117][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:32.118][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:32.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.120][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.120][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.121][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.123][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.123][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:32.124][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:32.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.126][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.127][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:32.128][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:32.128][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.129][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.130][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:32.131][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:32.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.132][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.133][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:32.134][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:32.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.135][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.136][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-03-15 16:05:32.137][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-03-15 16:05:32.138][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:32.139][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:32.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.140][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.141][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:32.142][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:32.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.144][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.144][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:32.145][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:32.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.147][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.148][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:32.148][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:32.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.150][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.151][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:32.152][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:32.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.153][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.154][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:32.155][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:32.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.157][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.157][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.158][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.160][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.160][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:32.161][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:32.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.163][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.163][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:32.164][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:32.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.166][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.167][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:32.167][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:32.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.169][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.170][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:32.171][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:32.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.172][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.173][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-03-15 16:05:32.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:32.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:32.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:32.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:32.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.180][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:32.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:32.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.184][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:32.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:32.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.187][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:32.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:32.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.190][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:32.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:32.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.193][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:32.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:32.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.197][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:32.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:32.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:32.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:32.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.203][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:32.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:32.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.207][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:32.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:32.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.210][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:32.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:32.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.213][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:32.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:32.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.216][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:32.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:32.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.220][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:32.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:32.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.223][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:32.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:32.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.227][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:32.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:32.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.230][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:32.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:32.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.234][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.237][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.240][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.244][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:32.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:32.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.247][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:32.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:32.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.250][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:32.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:32.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.254][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:32.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:32.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.258][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:32.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:32.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.261][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:32.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:32.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.264][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:32.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:32.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.268][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:32.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:32.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.275][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:32.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:32.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.279][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:32.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:32.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.282][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:32.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:32.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.285][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:32.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:32.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.292][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [19804, 0, 19804, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)8-5-9-26(33,15-28)22-7-11-27(34)17-12-19(29)18-13-20(30)21(31)14-24(18,3)16(17)6-10-25(22,27)4/h12,16,18,20-22,28,30-34H,5-11,13-15H2,1-4H3/t16-,18-,20+,21-,22-,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2025-03-15 16:05:32.293][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:05:32.294][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:05:32.296][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:32.297][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:32.298][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:32.302][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:32.303][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:32.304][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:32.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:32.307][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:05:32.310][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:05:32.311][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2025-03-15 16:05:32.312][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:05:32.313][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2025-03-15 16:05:32.315][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:32.316][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:32.316][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:32.321][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:32.322][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:32.322][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:32.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:32.324][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.327][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.330][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:32.333][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:32.334][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:32.335][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:32.339][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:32.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:32.341][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:32.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:32.342][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.345][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.349][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:32.352][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:32.352][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:32.353][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:32.358][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:32.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:32.360][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:32.360][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:32.361][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.365][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.368][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:32.371][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:32.372][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:32.372][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:32.377][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:32.378][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:32.378][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:32.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:32.380][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.384][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.387][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:32.390][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:32.390][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:32.391][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:32.396][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:32.397][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:32.398][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:32.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:32.399][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.403][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.406][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:32.409][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:32.410][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:32.410][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:32.415][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:32.416][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:32.417][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:32.418][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:32.419][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.422][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.426][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:32.429][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:32.430][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:32.431][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:32.435][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:32.436][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:32.437][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:32.438][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:32.439][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.442][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.445][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:32.449][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:32.449][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:32.450][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:32.455][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:32.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:32.456][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:32.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:32.458][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.462][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.465][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:32.469][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:05:32.471][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:05:32.473][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2025-03-15 16:05:32.474][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:05:32.475][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2025-03-15 16:05:32.477][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:32.477][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:32.478][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:32.483][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:32.484][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:32.485][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:32.485][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:32.486][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.490][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.493][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:32.497][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:32.497][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:32.498][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:32.503][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:32.504][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:32.504][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:32.505][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:32.506][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.510][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.513][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:32.516][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:32.517][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:32.518][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:32.522][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:32.523][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:32.524][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:32.525][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:32.526][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.529][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.532][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:32.535][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:05:32.537][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:32.537][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:32.538][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:32.543][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:32.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:32.545][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:32.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:32.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:32.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:32.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:32.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:32.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.553][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:32.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:32.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.556][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:32.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:32.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.559][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:32.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:32.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.562][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:32.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:32.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.570][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:32.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:32.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.574][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:32.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:32.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.577][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:32.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:32.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.580][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:32.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:32.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.583][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:32.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:32.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.586][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:32.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:32.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.589][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:32.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:32.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.593][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:32.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:32.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.596][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.599][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.602][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:32.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:32.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.605][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:32.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:32.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.608][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:32.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:32.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.612][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:32.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:32.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.615][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:32.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:32.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.618][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:32.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:32.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.621][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:32.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:32.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.624][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:32.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:32.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.627][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:32.628][private$selectFields]
biodb.TRACE[2025-03-15 16:05:32.629][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:32.629][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:32.630][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:32.631][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:32.632][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:32.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.634][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.634][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:32.635][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:32.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.637][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.637][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:32.638][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:32.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.640][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.640][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:32.641][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:32.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.643][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.643][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:32.644][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:32.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.646][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.647][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:32.647][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:32.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.649][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.650][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:32.650][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:32.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.652][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.652][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.653][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.655][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.656][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:32.656][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:32.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.658][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.659][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:32.659][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:32.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.661][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.661][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:32.662][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:32.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.664][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.664][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:32.665][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:32.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.667][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.668][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:32.668][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:32.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.670][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.671][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:32.672][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:32.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.673][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.674][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:32.675][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:32.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.676][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.677][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:32.678][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:32.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.679][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.680][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:32.680][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:32.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.682][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.683][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:32.683][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:32.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.685][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.686][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:32.686][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:32.687][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.688][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.688][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.689][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.690][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.691][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.692][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:32.692][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:32.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.694][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.695][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:32.696][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:32.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.697][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.698][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:32.698][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:32.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.700][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.701][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:32.702][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:32.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.703][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.704][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:32.705][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:32.706][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:32.707][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:32.707][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.708][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.709][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:32.710][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:32.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.711][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.712][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:32.713][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:32.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.714][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.715][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:32.716][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:32.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.717][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.718][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:32.719][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:32.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.721][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.721][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:32.722][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:32.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.724][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.724][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:32.725][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:32.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.727][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.728][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.728][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.730][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.731][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:32.731][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:32.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.733][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.734][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:32.735][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:32.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.736][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.737][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:32.738][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:32.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.739][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.740][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:32.741][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:32.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.742][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.743][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-03-15 16:05:32.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:32.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:32.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:32.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:32.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:32.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:32.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.754][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:32.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:32.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.757][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:32.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:32.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.760][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:32.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:32.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.763][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:32.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:32.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.766][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:32.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:32.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.770][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:32.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:32.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.773][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:32.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:32.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.776][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:32.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:32.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.779][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:32.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:32.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.782][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:32.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:32.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.785][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:32.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:32.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.788][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:32.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:32.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.791][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:32.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:32.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.794][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:32.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:32.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.798][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:32.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:32.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.801][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:32.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:32.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.804][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:32.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:32.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.807][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:32.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:32.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.810][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.814][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.817][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.820][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:32.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:32.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.823][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:32.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:32.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.826][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:32.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:32.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.830][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:32.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:32.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.833][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:32.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:32.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.841][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:32.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:32.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.844][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:32.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:32.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.847][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:32.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:32.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.850][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:32.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:32.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.853][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:32.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:32.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.856][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:32.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:32.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.859][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:32.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:32.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.866][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [7799, 0, 7799, C16H31N2O8P, InChI=1S/C16H28N2O4.H3O4P/c1-5-12(6-2)22-14-9-11(16(20)21-7-3)8-13(17)15(14)18-10(4)19;1-5(2,3)4/h9,12-15H,5-8,17H2,1-4H3,(H,18,19);(H3,1,2,3,4)/t13-,14+,15+;/m0./s1, ...].
biodb.DEBUG[2025-03-15 16:05:32.867][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:32.868][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:32.869][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:32.873][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:32.874][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:32.875][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:32.875][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:32.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:32.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:32.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:32.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:32.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.882][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:32.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:32.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.885][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:32.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:32.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.888][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:32.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:32.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.891][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:32.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:32.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.894][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:32.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:32.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.897][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:32.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:32.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.900][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:32.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:32.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.904][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:32.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:32.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.907][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:32.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:32.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.909][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:32.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:32.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.912][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:32.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:32.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.915][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:32.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:32.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.918][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.921][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.924][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:32.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:32.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.927][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:32.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:32.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.931][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:32.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:32.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.933][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:32.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:32.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.936][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:32.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:32.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.939][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:32.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:32.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.942][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:32.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:32.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.945][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:32.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:32.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.948][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:32.949][private$selectFields]
biodb.TRACE[2025-03-15 16:05:32.950][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:32.950][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:32.951][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:32.952][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:32.953][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:32.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.954][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.955][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:32.956][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:32.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.957][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.958][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:32.959][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:32.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.960][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.961][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:32.962][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:32.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.963][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.964][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:32.965][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:32.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.966][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.967][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:32.968][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:32.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.969][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.970][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:32.971][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:32.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.972][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.973][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.974][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:32.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.975][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.976][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:32.977][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:32.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.978][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.979][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:32.980][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:32.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.981][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.982][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:32.983][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:32.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.984][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.985][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:32.986][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:32.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.987][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.988][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:32.989][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:32.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.990][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.991][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:32.992][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:32.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.993][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.994][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:32.995][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:32.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:32.996][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:32.997][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:32.998][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:32.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.000][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.000][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:33.001][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:33.002][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.003][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.004][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:33.004][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:33.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.006][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.007][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:33.008][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:33.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.009][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.010][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:33.011][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:33.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.012][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.013][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:33.014][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:33.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.015][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.016][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:33.016][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:33.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.018][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.019][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:33.019][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:33.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.021][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.022][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:33.023][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:33.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.024][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.025][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-03-15 16:05:33.026][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-03-15 16:05:33.027][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:33.028][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:33.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.029][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.030][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:33.031][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:33.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.033][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.033][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:33.034][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:33.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.036][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.036][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:33.037][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:33.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.038][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.039][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:33.040][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:33.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.042][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.042][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:33.043][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:33.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.045][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.045][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:33.046][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:33.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.047][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.048][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:33.049][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:33.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.050][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.051][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:33.052][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:33.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.054][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.055][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:33.056][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:33.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.057][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.058][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:33.059][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:33.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.060][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.061][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-03-15 16:05:33.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:33.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:33.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:33.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:33.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:33.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:33.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.072][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:33.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:33.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.076][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:33.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:33.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.079][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:33.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:33.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.082][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:33.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:33.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.085][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:33.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:33.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.089][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:33.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:33.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.092][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:33.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:33.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.095][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:33.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:33.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.098][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:33.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:33.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.106][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:33.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:33.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.109][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:33.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:33.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.112][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:33.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:33.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.115][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:33.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:33.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.118][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:33.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:33.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.121][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:33.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:33.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.125][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:33.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:33.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.128][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:33.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:33.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.131][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:33.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:33.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.134][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:33.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:33.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.137][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:33.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:33.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.140][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:33.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:33.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.143][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:33.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:33.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.146][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:33.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:33.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.149][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:33.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:33.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.153][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:33.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:33.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.156][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:33.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:33.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.159][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:33.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:33.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.162][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:33.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:33.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.166][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:33.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:33.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.169][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:33.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:33.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.176][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [71954, 0, 71954, C18H21F3N6O2, InChI=1S/C18H21F3N6O2/c19-18(20,21)13-9-15(22)23-11-12(13)14-10-16(26-1-5-28-6-2-26)25-17(24-14)27-3-7-29-8-4-27/h9-11H,1-8H2,(H2,22,23), ...].
biodb.DEBUG[2025-03-15 16:05:33.177][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:33.177][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:33.178][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:33.183][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:33.183][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:33.184][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:33.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:33.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:33.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:33.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:33.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:33.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.192][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:33.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:33.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.195][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:33.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:33.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.197][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:33.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:33.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:33.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:33.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.203][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:33.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:33.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.206][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:33.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:33.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.209][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:33.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:33.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.212][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:33.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:33.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.215][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:33.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:33.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.218][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:33.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:33.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.221][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:33.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:33.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.224][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:33.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:33.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.227][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:33.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:33.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.230][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:33.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:33.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.233][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:33.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:33.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.236][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:33.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:33.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.239][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:33.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:33.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.242][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:33.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:33.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.245][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:33.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:33.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.248][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:33.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:33.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.251][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:33.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:33.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.254][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:33.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:33.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.257][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:33.258][private$selectFields]
biodb.TRACE[2025-03-15 16:05:33.259][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:33.259][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:33.260][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:33.261][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:33.262][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:33.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.263][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.264][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:33.265][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:33.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.266][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.267][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:33.268][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:33.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.269][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.270][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:33.271][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:33.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.272][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.273][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:33.274][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:33.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.276][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.276][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:33.277][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:33.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.279][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.279][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:33.280][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:33.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.282][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.282][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:33.283][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:33.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.285][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.285][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:33.286][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:33.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.288][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.289][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:33.289][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:33.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.291][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.292][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:33.292][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:33.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.294][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.295][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:33.296][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:33.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.297][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.298][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:33.299][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:33.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.300][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.301][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:33.302][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:33.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.303][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.304][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:33.304][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:33.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.306][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.307][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:33.308][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:33.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.309][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.310][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:33.311][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:33.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.312][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.313][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:33.314][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:33.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.315][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.316][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:33.317][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:33.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.318][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.319][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:33.320][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:33.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.321][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.322][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:33.323][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:33.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.342][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.343][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:33.344][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:33.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.346][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.346][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:33.347][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:33.348][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.349][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.349][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:33.350][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:33.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.352][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.352][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-03-15 16:05:33.353][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-03-15 16:05:33.354][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:33.357][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:33.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.362][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.364][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:33.364][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:33.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.366][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.367][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:33.368][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:33.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.369][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.370][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:33.371][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:33.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.372][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.373][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:33.374][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:33.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.376][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.377][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:33.377][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:33.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.379][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.380][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:33.380][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:33.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.382][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.383][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:33.384][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:33.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.385][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.386][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:33.387][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:33.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.392][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.393][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:33.394][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:33.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.395][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.396][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:33.397][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:33.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.399][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.399][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-03-15 16:05:33.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:33.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:33.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:33.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:33.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:33.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:33.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.410][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:33.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:33.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.413][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:33.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:33.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.416][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:33.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:33.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.419][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:33.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:33.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.422][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:33.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:33.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.426][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:33.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:33.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.429][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:33.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:33.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.432][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:33.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:33.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.435][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:33.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:33.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.439][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:33.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:33.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.442][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:33.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:33.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.445][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:33.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:33.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.448][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:33.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:33.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.451][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:33.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:33.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.454][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:33.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:33.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.458][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:33.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:33.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.460][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:33.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:33.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.463][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:33.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:33.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.467][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:33.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:33.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.470][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:33.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:33.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.473][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:33.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:33.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.477][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:33.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:33.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.480][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:33.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:33.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.483][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:33.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:33.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.487][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:33.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:33.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.490][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:33.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:33.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.493][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:33.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:33.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.496][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:33.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:33.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.499][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:33.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:33.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.502][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:33.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:33.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.510][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [197612, 0, 197612, C18H18O9S, InChI=1S/C18H18O9S/c1-7-3-9(19)13-11(4-7)27-16-8(14(13)21)5-12(28-16)18(25,17(24)26-2)6-10(20)15(22)23/h3-4,10,12,19-20,25H,5-6H2,1-2H3,(H,22,23)/t10-,12+,18?/m1/s1, ...].
biodb.DEBUG[2025-03-15 16:05:33.510][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:05:33.511][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:05:33.518][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:33.519][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:33.519][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:33.524][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:33.525][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:33.526][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:33.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:33.529][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:05:33.531][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:05:33.533][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-03-15 16:05:33.534][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:05:33.535][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-03-15 16:05:33.537][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:33.537][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:33.538][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:33.543][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:33.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:33.544][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:33.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:33.546][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:33.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:33.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.549][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:33.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:33.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.552][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:33.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:33.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:33.556][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:05:33.558][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:05:33.559][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-03-15 16:05:33.560][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:05:33.561][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-03-15 16:05:33.563][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:33.563][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:33.564][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:33.569][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:33.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:33.570][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:33.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:33.572][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:33.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:33.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.575][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:33.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:33.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.578][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:33.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:33.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:33.582][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:33.582][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:33.583][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:33.588][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:33.588][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:33.589][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:33.590][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:33.591][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:33.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:33.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.594][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:33.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:33.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.597][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:33.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:33.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:33.600][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:05:33.602][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:33.602][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:33.603][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:33.608][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:33.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:33.609][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:33.610][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:33.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:33.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:33.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:33.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:33.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.617][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:33.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:33.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.620][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:33.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:33.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.623][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:33.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:33.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.626][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:33.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:33.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.629][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:33.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:33.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.632][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:33.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:33.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.635][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:33.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:33.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.638][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:33.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:33.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.641][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:33.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:33.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.644][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:33.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:33.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.647][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:33.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:33.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.650][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:33.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:33.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.653][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:33.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:33.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.656][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:33.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:33.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.659][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:33.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:33.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.663][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:33.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:33.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.670][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:33.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:33.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.673][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:33.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:33.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.676][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:33.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:33.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.679][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:33.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:33.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.683][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:33.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:33.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.686][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:33.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:33.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.689][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:33.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:33.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.692][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:33.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:33.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.694][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:33.695][private$selectFields]
biodb.TRACE[2025-03-15 16:05:33.696][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:33.696][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:33.697][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:33.698][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:33.699][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:33.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.700][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.701][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:33.702][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:33.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.704][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.704][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:33.705][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:33.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.706][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.707][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:33.708][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:33.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.710][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.711][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:33.711][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:33.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.713][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.714][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:33.714][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:33.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.716][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.717][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:33.717][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:33.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.719][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.720][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:33.721][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:33.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.722][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.723][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:33.724][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:33.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.725][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.726][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:33.727][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:33.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.728][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.729][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:33.730][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:33.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.731][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.732][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:33.733][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:33.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.734][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.735][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:33.736][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:33.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.737][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.738][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:33.738][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:33.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.740][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.740][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:33.741][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:33.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.743][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.743][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:33.744][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:33.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.746][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.747][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:33.747][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:33.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.749][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.750][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:33.751][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:33.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.752][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.753][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:33.754][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:33.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.755][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.756][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:33.757][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:33.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.759][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.759][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:33.760][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:33.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.762][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.763][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:33.764][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:33.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.765][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.766][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:33.767][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:33.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.768][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.769][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:33.769][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:33.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.771][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.772][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:33.772][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:33.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.774][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.774][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:33.775][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:33.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.777][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.777][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-03-15 16:05:33.778][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-03-15 16:05:33.779][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:33.779][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:33.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.781][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.782][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:33.782][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:33.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.784][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.785][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:33.785][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:33.786][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.787][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.787][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:33.788][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:33.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.790][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.790][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:33.791][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:33.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.793][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.793][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:33.794][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:33.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.795][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.796][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:33.797][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:33.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.798][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.799][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:33.800][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:33.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.801][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.802][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:33.803][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:33.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.804][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.805][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:33.806][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:33.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.807][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.808][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:33.809][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:33.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.811][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.811][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-03-15 16:05:33.812][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:33.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:33.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:33.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:33.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.818][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:33.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:33.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.822][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:33.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:33.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.825][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:33.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:33.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.828][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:33.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:33.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.831][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:33.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:33.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.834][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:33.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:33.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.837][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:33.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:33.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.840][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:33.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:33.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.843][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:33.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:33.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.847][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:33.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:33.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.850][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:33.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:33.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.853][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:33.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:33.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.856][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:33.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:33.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.859][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:33.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:33.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.862][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:33.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:33.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.865][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:33.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:33.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.868][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:33.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:33.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.871][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:33.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:33.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.875][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:33.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:33.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.878][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:33.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:33.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.881][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:33.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:33.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.884][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:33.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:33.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.887][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:33.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:33.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.890][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:33.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:33.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.894][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:33.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:33.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.897][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:33.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:33.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.900][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:33.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:33.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.903][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:33.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:33.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.906][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:33.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:33.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.909][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:33.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:33.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.912][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:33.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:33.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.920][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [192288, 0, 192288, C27H54O2, InChI=1S/C27H54O2/c1-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-24-25-26-27(28)29-2/h3-26H2,1-2H3, ...].
biodb.DEBUG[2025-03-15 16:05:33.921][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:33.922][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:33.922][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:33.931][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:33.932][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:33.933][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:33.934][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:33.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:33.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:33.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:33.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:33.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.941][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:33.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:33.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.944][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:33.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:33.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.948][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:33.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:33.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.951][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:33.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:33.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.954][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:33.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:33.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.958][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:33.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:33.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.961][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:33.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:33.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.964][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:33.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:33.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.967][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:33.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:33.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.970][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:33.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:33.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.973][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:33.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:33.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.976][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:33.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:33.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.980][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:33.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:33.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.983][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:33.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:33.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.986][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:33.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:33.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.989][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:33.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:33.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.992][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:33.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:33.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.995][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:33.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:33.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:33.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:33.998][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:33.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:34.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.001][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:34.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:34.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.004][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:34.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:34.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.007][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:34.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:34.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.010][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:34.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:34.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.013][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:34.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:34.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.016][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:34.017][private$selectFields]
biodb.TRACE[2025-03-15 16:05:34.017][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:34.018][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:34.019][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:34.020][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:34.021][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:34.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.022][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.023][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:34.023][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:34.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.025][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.026][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:34.026][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:34.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.028][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.028][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:34.029][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:34.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.031][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.032][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:34.032][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:34.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.034][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.034][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:34.035][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:34.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.037][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.037][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:34.038][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:34.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.039][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.040][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.041][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.042][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.043][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:34.044][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:34.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.045][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.046][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:34.047][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:34.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.049][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.049][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:34.050][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:34.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.052][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.052][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:34.053][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:34.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.055][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.055][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:34.056][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:34.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.058][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.059][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:34.059][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:34.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.061][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.062][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:34.063][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:34.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.064][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.065][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:34.066][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:34.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.067][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.068][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:34.069][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:34.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.070][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.071][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:34.072][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:34.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.073][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.074][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:34.075][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:34.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.076][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.077][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:34.078][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:34.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.079][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.080][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.081][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.082][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.083][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:34.084][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:34.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.085][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.086][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:34.087][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:34.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.088][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.089][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:34.090][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:34.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.091][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.092][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:34.093][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:34.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.094][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.095][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:34.096][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:34.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.097][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.098][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:34.099][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:34.100][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:34.101][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:34.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.102][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.103][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:34.104][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:34.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.105][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.106][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:34.107][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:34.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.109][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.109][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:34.110][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:34.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.111][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.112][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:34.113][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:34.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.115][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.115][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:34.116][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:34.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.118][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.118][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:34.119][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:34.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.121][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.122][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.122][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.124][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.125][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:34.125][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:34.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.127][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.128][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:34.128][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:34.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.130][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.130][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:34.131][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:34.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.133][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.133][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:34.134][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:34.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.135][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.136][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-03-15 16:05:34.137][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:34.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:34.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:34.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:34.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:34.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:34.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.147][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:34.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:34.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.150][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:34.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:34.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.153][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:34.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:34.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:34.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:34.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.159][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:34.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:34.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.162][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:34.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:34.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.165][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:34.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:34.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.168][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:34.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:34.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.172][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:34.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:34.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.175][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:34.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:34.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.178][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:34.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:34.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.181][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:34.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:34.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.184][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:34.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:34.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.187][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:34.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:34.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.191][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:34.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:34.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.199][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:34.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:34.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.202][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:34.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:34.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.205][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:34.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:34.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.208][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.211][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.214][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.217][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:34.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:34.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.220][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:34.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:34.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:34.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:34.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.226][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:34.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:34.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.229][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:34.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:34.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.233][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:34.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:34.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.236][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:34.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:34.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.239][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:34.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:34.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.242][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:34.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:34.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.245][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:34.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:34.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.248][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:34.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:34.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.251][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:34.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:34.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.259][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2025-03-15 16:05:34.260][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:34.261][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:34.261][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:34.266][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:34.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:34.268][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:34.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:34.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:34.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:34.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:34.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:34.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.275][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:34.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:34.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.278][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:34.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:34.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.281][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:34.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:34.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.284][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:34.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:34.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.287][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:34.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:34.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.290][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:34.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:34.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.293][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:34.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:34.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.296][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:34.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:34.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.299][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:34.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:34.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.302][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:34.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:34.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.305][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:34.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:34.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.308][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:34.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:34.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.311][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.314][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.317][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:34.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:34.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.321][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:34.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:34.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.324][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:34.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:34.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.327][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:34.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:34.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.329][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:34.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:34.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.333][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:34.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:34.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.335][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:34.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:34.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.339][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:34.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:34.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.342][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:34.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:34.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.345][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:34.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:34.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.348][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:34.349][private$selectFields]
biodb.TRACE[2025-03-15 16:05:34.349][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:34.350][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:34.351][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:34.352][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:34.352][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:34.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.354][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.355][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:34.355][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:34.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.357][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.357][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:34.358][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:34.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.360][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.360][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:34.361][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:34.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.362][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.363][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:34.364][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:34.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.366][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.366][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:34.367][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:34.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.369][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.369][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:34.370][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:34.371][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.372][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.372][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.373][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.374][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.375][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:34.376][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:34.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.377][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.378][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:34.379][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:34.380][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.380][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.381][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:34.382][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:34.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.384][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.384][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:34.385][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:34.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.386][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.387][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:34.388][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:34.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.389][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.390][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:34.391][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:34.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.392][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.393][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:34.394][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:34.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.395][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.396][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:34.397][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:34.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.398][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.399][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:34.400][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:34.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.401][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.402][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:34.403][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:34.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.404][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.405][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:34.406][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:34.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.407][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.408][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:34.408][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:34.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.410][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.411][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.411][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.413][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.414][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:34.415][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:34.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.416][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.417][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:34.418][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:34.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.419][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.420][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:34.420][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:34.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.422][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.423][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:34.423][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:34.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.425][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.426][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:34.426][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:34.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.428][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.429][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-03-15 16:05:34.430][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-03-15 16:05:34.431][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:34.431][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:34.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.433][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.434][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:34.434][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:34.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.436][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.437][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:34.437][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:34.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.439][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.440][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:34.441][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:34.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.442][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.443][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:34.444][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:34.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.445][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.446][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:34.447][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:34.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.448][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.449][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.450][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.451][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.452][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:34.458][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:34.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.459][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.460][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:34.461][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:34.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.462][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.463][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:34.464][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:34.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.465][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.466][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:34.467][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:34.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.468][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.469][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-03-15 16:05:34.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:34.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:34.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:34.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:34.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:34.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:34.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.479][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:34.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:34.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.482][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:34.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:34.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.485][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:34.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:34.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:34.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:34.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.492][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:34.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:34.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.495][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:34.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:34.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.498][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:34.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:34.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.501][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:34.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:34.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.504][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:34.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:34.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.507][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:34.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:34.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.510][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:34.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:34.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.513][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:34.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:34.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.516][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:34.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:34.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.519][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:34.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:34.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.522][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:34.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:34.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.525][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.528][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.531][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.534][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:34.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:34.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.537][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:34.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:34.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.540][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:34.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:34.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.543][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:34.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:34.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.546][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:34.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:34.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.549][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:34.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:34.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.552][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:34.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:34.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.573][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:34.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:34.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.576][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:34.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:34.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.579][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:34.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:34.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.582][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:34.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:34.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.586][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:34.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:34.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.597][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [209892, 0, 209892, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-30(8)25-13-14-26-27(4,5)17-10-18-28(26,6)24(25)16-20-29(23,30)7/h11,13,22-24,26H,9-10,12,14-20H2,1-8H3/t22-,23+,24+,26+,28-,29+,30-/m1/s1, ...].
biodb.DEBUG[2025-03-15 16:05:34.598][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:05:34.598][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:05:34.600][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:34.601][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:34.602][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:34.607][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:34.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:34.608][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:34.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:34.611][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:05:34.614][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:05:34.615][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2025-03-15 16:05:34.616][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:05:34.617][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2025-03-15 16:05:34.619][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:34.620][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:34.620][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:34.625][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:34.626][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:34.627][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:34.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:34.628][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.631][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.634][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:34.637][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:34.638][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:34.639][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:34.643][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:34.644][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:34.645][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:34.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:34.647][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.650][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.653][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:34.657][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:05:34.659][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:05:34.660][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2025-03-15 16:05:34.661][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:05:34.662][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2025-03-15 16:05:34.664][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:34.665][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:34.666][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:34.671][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:34.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:34.672][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:34.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:34.674][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.677][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.680][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:34.683][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:34.684][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:34.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:34.689][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:34.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:34.691][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:34.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:34.692][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.695][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.698][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:34.701][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:34.702][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:34.703][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:34.708][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:34.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:34.710][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:34.710][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:34.711][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.715][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.718][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:34.721][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:05:34.723][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:34.723][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:34.724][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:34.729][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:34.730][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:34.731][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:34.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:34.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:34.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:34.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:34.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:34.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.739][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:34.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:34.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.742][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:34.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:34.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.745][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:34.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:34.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.748][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:34.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:34.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.756][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:34.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:34.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.759][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:34.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:34.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.762][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:34.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:34.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.765][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:34.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:34.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.768][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:34.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:34.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.771][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:34.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:34.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.774][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:34.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:34.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.778][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:34.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:34.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.781][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.783][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.786][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:34.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:34.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.789][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:34.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:34.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.792][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:34.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:34.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.795][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:34.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:34.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.799][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:34.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:34.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.801][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:34.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:34.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.805][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:34.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:34.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.807][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:34.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:34.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.811][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:34.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:34.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.814][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:34.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:34.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.817][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:34.818][private$selectFields]
biodb.TRACE[2025-03-15 16:05:34.818][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:34.819][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:34.820][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:34.821][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:34.822][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:34.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.823][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.824][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:34.824][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:34.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.826][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.827][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:34.828][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:34.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.829][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.830][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:34.831][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:34.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.832][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.833][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:34.833][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:34.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.835][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.835][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:34.836][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:34.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.838][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.838][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:34.839][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:34.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.841][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.841][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.842][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.844][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.844][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:34.845][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:34.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.847][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.847][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:34.848][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:34.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.850][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.850][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:34.851][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:34.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.852][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.853][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:34.854][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:34.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.855][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.856][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:34.857][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:34.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.858][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.859][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:34.860][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:34.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.861][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.862][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:34.862][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:34.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.864][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.864][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:34.865][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:34.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.866][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.867][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:34.868][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:34.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.870][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.870][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:34.871][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:34.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.873][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.873][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:34.874][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:34.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.875][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.876][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:34.877][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:34.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.878][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.879][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.880][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.882][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.882][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:34.883][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:34.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.885][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.885][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:34.886][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:34.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.888][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.889][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:34.889][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:34.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.891][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.892][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:34.893][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:34.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.894][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.895][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:34.895][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:34.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.897][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.898][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:34.898][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:34.899][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:34.900][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:34.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.901][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.902][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:34.903][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:34.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.904][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.905][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:34.906][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:34.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.908][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.908][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:34.909][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:34.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.911][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.912][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:34.912][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:34.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.914][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.915][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:34.916][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:34.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.917][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.918][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:34.919][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:34.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.920][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.921][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.921][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:34.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.923][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.924][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:34.925][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:34.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.926][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.927][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:34.928][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:34.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.929][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.930][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:34.931][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:34.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.932][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.933][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:34.933][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:34.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.935][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.936][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-03-15 16:05:34.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:34.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:34.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:34.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:34.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.943][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:34.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:34.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.946][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:34.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:34.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.949][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:34.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:34.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.952][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:34.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:34.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:34.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:34.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:34.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:34.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.961][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:34.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:34.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.965][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:34.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:34.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.968][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:34.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:34.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.971][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:34.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:34.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.974][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:34.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:34.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.977][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:34.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:34.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.980][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:34.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:34.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.983][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:34.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:34.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.987][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:34.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:34.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.990][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:34.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:34.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.994][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:34.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:34.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:34.997][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:34.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:34.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:34.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.000][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:35.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:35.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.003][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.006][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.009][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.017][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:35.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:35.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.021][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:35.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:35.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.024][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:35.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:35.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.027][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:35.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:35.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.030][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:35.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:35.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.033][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:35.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:35.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.036][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:35.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:35.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.040][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:35.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:35.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.042][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:35.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:35.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.046][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:35.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:35.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.049][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:35.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:35.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.052][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:35.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:35.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.060][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2025-03-15 16:05:35.061][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:35.062][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:35.062][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:35.067][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:35.068][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:35.069][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:35.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:35.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:35.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:35.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.073][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:35.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:35.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.076][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:35.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:35.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.080][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:35.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:35.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.083][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:35.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:35.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.086][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:35.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:35.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.089][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:35.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:35.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.092][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:35.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:35.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.095][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:35.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:35.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.098][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:35.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:35.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.101][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:35.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:35.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.105][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:35.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:35.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.108][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:35.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:35.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.111][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:35.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:35.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.114][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.117][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.121][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:35.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:35.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.124][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:35.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:35.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.127][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:35.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:35.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.130][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:35.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:35.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.132][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:35.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:35.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.136][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:35.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:35.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.139][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:35.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:35.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.142][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:35.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:35.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.145][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:35.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:35.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.148][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:35.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:35.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.151][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:35.152][private$selectFields]
biodb.TRACE[2025-03-15 16:05:35.153][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:35.154][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:35.154][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:35.155][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:35.156][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:35.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.157][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.158][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:35.159][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:35.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.160][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.161][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:35.162][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:35.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.163][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.164][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:35.165][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:35.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.167][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.167][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:35.168][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:35.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.170][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.170][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:35.171][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:35.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.173][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.173][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:35.174][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:35.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.176][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.176][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.177][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.178][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.179][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:35.180][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:35.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.182][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.182][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:35.183][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:35.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.185][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.186][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:35.186][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:35.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.188][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.189][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:35.189][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:35.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.191][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.192][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:35.192][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:35.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.194][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.195][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:35.196][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:35.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.197][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.198][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:35.199][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:35.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.200][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.201][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:35.202][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:35.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.204][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.204][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:35.205][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:35.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.206][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.207][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:35.208][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:35.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.210][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.210][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:35.211][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:35.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.213][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.213][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:35.214][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:35.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.216][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.217][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.217][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.219][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.220][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:35.220][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:35.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.222][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.223][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:35.223][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:35.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.225][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.226][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:35.226][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:35.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.228][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.229][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:35.229][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:35.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.231][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.232][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:35.232][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:35.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.234][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.234][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:35.235][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:35.236][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:35.237][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:35.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.238][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.239][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:35.240][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:35.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.241][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.242][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:35.243][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:35.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.244][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.245][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:35.246][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:35.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.247][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.248][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:35.249][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:35.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.250][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.251][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:35.252][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:35.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.253][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.254][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:35.255][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:35.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.256][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.257][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.258][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.259][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.260][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:35.261][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:35.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.262][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.263][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:35.264][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:35.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.265][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.266][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:35.267][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:35.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.269][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.270][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:35.270][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:35.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.272][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.273][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-03-15 16:05:35.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:35.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:35.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.277][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:35.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:35.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:35.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:35.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.287][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:35.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:35.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.290][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:35.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:35.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.293][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:35.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:35.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.297][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:35.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:35.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.300][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:35.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:35.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.303][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:35.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:35.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.306][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:35.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:35.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.309][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:35.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:35.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.313][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:35.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:35.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.316][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:35.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:35.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.319][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:35.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:35.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.322][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:35.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:35.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.325][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:35.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:35.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.328][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:35.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:35.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.331][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:35.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:35.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.335][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:35.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:35.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.338][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:35.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:35.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.341][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:35.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:35.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.344][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.347][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.351][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.354][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:35.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:35.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.357][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:35.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:35.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.360][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:35.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:35.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.363][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:35.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:35.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.367][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:35.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:35.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.370][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:35.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:35.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.373][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:35.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:35.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.376][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:35.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:35.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.379][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:35.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:35.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.382][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:35.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:35.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.386][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:35.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:35.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.389][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:35.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:35.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.397][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [16587, 0, 16587, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)9-8-22(31)26(5,33)21-7-11-27(34)16-12-18(28)17-13-19(29)20(30)14-24(17,3)15(16)6-10-25(21,27)4/h12,15,17,19-22,29-34H,6-11,13-14H2,1-5H3/t15-,17-,19+,20-,21-,22+,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2025-03-15 16:05:35.398][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:35.398][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:35.399][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:35.404][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:35.405][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:35.405][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:35.406][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:35.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:35.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:35.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:35.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:35.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.414][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:35.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:35.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.417][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:35.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:35.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.420][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:35.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:35.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.424][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:35.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:35.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.427][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:35.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:35.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.430][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:35.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:35.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.433][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:35.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:35.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.436][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:35.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:35.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.439][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:35.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:35.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.442][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:35.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:35.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.446][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:35.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:35.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.449][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:35.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:35.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.452][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.455][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.458][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:35.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:35.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.461][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:35.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:35.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.465][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:35.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:35.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.468][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:35.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:35.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.471][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:35.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:35.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.475][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:35.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:35.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.478][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:35.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:35.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.481][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:35.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:35.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.484][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:35.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:35.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.487][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:35.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:35.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.490][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:35.491][private$selectFields]
biodb.TRACE[2025-03-15 16:05:35.492][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:35.492][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:35.493][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:35.494][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:35.495][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:35.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.496][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.497][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:35.498][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:35.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.499][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.500][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:35.501][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:35.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.502][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.503][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:35.504][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:35.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.505][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.506][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:35.507][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:35.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.508][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.509][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:35.510][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:35.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.511][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.512][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:35.513][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:35.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.514][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.515][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.516][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.517][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.518][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:35.519][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:35.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.521][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.521][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:35.522][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:35.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.524][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.524][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:35.525][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:35.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.527][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.527][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:35.528][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:35.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.530][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.530][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:35.531][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:35.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.533][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.533][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:35.534][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:35.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.535][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.536][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:35.537][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:35.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.538][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.539][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:35.540][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:35.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.541][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.542][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:35.543][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:35.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.544][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.545][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:35.546][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:35.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.552][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.553][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:35.553][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:35.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.555][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.556][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:35.556][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:35.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.558][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.559][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.560][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.561][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.562][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:35.563][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:35.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.564][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.565][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:35.566][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:35.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.567][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.568][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:35.569][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:35.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.570][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.571][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:35.572][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:35.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.573][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.574][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:35.574][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:35.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.576][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.577][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-03-15 16:05:35.577][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-03-15 16:05:35.578][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:35.579][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:35.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.580][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.581][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:35.582][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:35.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.583][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.584][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:35.584][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:35.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.586][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.587][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:35.587][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:35.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.589][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.589][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:35.590][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:35.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.592][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.592][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:35.593][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:35.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.594][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.595][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.596][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.598][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.599][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:35.599][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:35.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.601][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.601][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:35.602][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:35.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.604][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.605][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:35.605][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:35.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.607][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.607][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:35.608][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:35.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.609][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.610][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-03-15 16:05:35.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:35.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:35.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:35.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:35.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:35.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:35.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.620][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:35.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:35.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.623][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:35.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:35.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.625][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:35.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:35.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.629][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:35.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:35.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.632][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:35.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:35.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.635][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:35.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:35.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.638][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:35.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:35.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.641][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:35.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:35.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.644][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:35.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:35.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.647][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:35.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:35.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.650][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:35.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:35.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.653][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:35.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:35.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.657][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:35.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:35.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.660][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:35.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:35.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.663][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:35.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:35.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.666][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.670][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.673][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.676][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:35.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:35.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.679][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:35.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:35.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.683][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:35.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:35.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.686][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:35.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:35.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.689][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:35.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:35.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.692][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:35.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:35.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.695][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:35.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:35.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.698][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:35.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:35.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.701][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:35.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:35.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.705][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:35.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:35.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.708][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:35.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:35.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.711][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:35.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:35.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.718][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [19804, 0, 19804, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)8-5-9-26(33,15-28)22-7-11-27(34)17-12-19(29)18-13-20(30)21(31)14-24(18,3)16(17)6-10-25(22,27)4/h12,16,18,20-22,28,30-34H,5-11,13-15H2,1-4H3/t16-,18-,20+,21-,22-,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2025-03-15 16:05:35.719][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:05:35.720][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:05:35.722][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:35.723][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:35.724][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:35.729][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:35.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:35.730][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:35.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:35.733][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:05:35.735][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:05:35.736][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2025-03-15 16:05:35.737][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:05:35.738][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2025-03-15 16:05:35.740][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:35.741][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:35.742][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:35.746][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:35.747][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:35.748][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:35.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:35.749][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.753][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.755][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:35.759][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:35.759][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:35.760][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:35.764][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:35.765][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:35.766][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:35.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:35.768][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.771][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.774][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:35.777][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:35.778][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:35.778][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:35.784][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:35.784][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:35.785][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:35.786][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:35.787][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.790][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.794][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:35.797][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:35.798][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:35.798][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:35.803][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:35.804][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:35.805][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:35.805][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:35.806][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.810][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.813][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:35.816][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:35.821][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:35.822][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:35.827][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:35.828][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:35.828][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:35.829][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:35.830][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.833][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.836][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:35.839][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:35.840][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:35.841][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:35.846][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:35.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:35.847][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:35.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:35.849][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.852][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.855][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:35.859][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:35.859][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:35.860][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:35.865][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:35.865][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:35.866][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:35.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:35.868][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.871][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.873][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:35.877][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:35.877][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:35.878][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:35.883][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:35.884][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:35.884][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:35.885][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:35.886][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.890][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.893][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:35.896][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:05:35.898][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:05:35.899][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2025-03-15 16:05:35.901][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:05:35.902][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2025-03-15 16:05:35.904][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:35.905][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:35.905][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:35.910][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:35.911][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:35.912][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:35.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:35.914][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.917][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.920][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:35.924][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:35.924][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:35.925][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:35.930][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:35.930][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:35.931][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:35.932][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:35.933][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.936][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.940][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:35.943][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:35.944][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:35.944][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:35.949][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:35.950][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:35.951][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:35.952][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:35.953][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.956][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.974][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:35.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:35.977][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:05:35.979][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:35.979][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:35.980][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:35.985][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:35.986][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:35.989][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:35.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:35.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:35.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:35.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:35.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:35.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:35.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:35.998][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:35.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:36.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.002][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:36.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:36.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.005][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:36.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:36.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.007][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:36.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:36.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.011][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:36.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:36.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.014][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:36.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:36.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.017][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:36.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:36.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.020][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:36.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:36.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.024][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:36.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:36.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.027][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:36.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:36.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.030][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:36.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:36.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.034][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:36.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:36.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.037][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:36.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:36.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.040][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:36.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:36.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.044][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:36.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:36.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.047][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:36.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:36.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.050][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:36.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:36.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.053][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:36.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:36.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.056][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:36.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:36.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.060][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:36.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:36.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.063][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:36.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:36.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.066][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:36.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:36.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.069][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:36.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:36.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.073][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:36.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:36.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.076][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:36.077][private$selectFields]
biodb.TRACE[2025-03-15 16:05:36.077][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:36.078][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:36.079][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:36.080][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:36.081][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:36.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.082][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.083][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:36.084][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:36.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.085][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.086][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:36.087][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:36.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.088][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.089][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:36.090][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:36.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.091][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.092][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:36.093][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:36.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.094][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.095][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:36.096][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:36.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.097][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.098][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:36.099][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:36.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.100][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.101][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:36.102][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:36.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.103][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.104][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:36.105][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:36.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.106][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.107][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:36.108][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:36.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.109][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.110][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:36.111][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:36.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.113][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.113][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:36.114][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:36.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.116][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.117][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:36.117][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:36.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.119][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.120][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:36.126][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:36.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.128][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.128][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:36.129][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:36.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.131][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.131][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:36.132][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:36.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.134][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.135][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:36.135][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:36.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.137][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.138][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:36.139][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:36.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.140][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.141][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:36.142][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:36.142][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.143][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.144][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:36.144][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:36.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.146][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.147][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:36.147][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:36.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.149][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.150][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:36.150][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:36.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.152][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.152][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:36.153][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:36.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.155][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.155][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:36.156][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:36.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.157][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.158][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:36.159][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:36.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.161][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.161][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:36.162][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:36.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.163][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.164][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:36.165][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:36.166][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:36.167][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:36.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.168][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.169][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:36.170][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:36.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.171][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.172][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:36.173][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:36.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.174][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.175][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:36.176][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:36.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.177][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.178][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:36.178][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:36.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.180][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.180][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:36.181][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:36.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.183][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.183][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:36.184][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:36.185][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.186][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.186][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:36.187][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:36.188][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.189][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.189][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:36.190][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:36.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.192][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.193][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:36.193][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:36.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.195][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.196][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:36.196][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:36.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.198][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.199][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:36.200][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:36.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.201][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.202][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-03-15 16:05:36.203][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:36.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:36.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:36.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:36.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:36.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:36.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.212][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:36.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:36.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.215][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:36.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:36.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.219][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:36.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:36.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:36.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:36.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.225][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:36.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:36.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.229][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:36.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:36.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.232][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:36.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:36.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.235][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:36.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:36.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.239][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:36.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:36.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.242][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:36.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:36.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.245][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:36.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:36.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.249][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:36.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:36.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.252][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:36.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:36.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.256][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:36.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:36.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.259][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:36.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:36.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.262][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:36.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:36.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.266][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:36.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:36.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.269][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:36.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:36.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.272][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:36.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:36.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.275][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:36.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:36.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.279][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:36.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:36.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.282][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:36.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:36.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.285][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:36.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:36.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.288][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:36.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:36.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.291][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:36.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:36.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.294][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:36.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:36.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.298][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:36.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:36.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.301][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:36.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:36.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.304][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:36.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:36.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.307][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:36.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:36.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.311][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:36.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:36.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.314][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:36.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:36.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.317][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:36.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:36.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.325][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [7799, 0, 7799, C16H31N2O8P, InChI=1S/C16H28N2O4.H3O4P/c1-5-12(6-2)22-14-9-11(16(20)21-7-3)8-13(17)15(14)18-10(4)19;1-5(2,3)4/h9,12-15H,5-8,17H2,1-4H3,(H,18,19);(H3,1,2,3,4)/t13-,14+,15+;/m0./s1, ...].
biodb.DEBUG[2025-03-15 16:05:36.326][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:36.327][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:36.328][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:36.333][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:36.334][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:36.334][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:36.335][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:36.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:36.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:36.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:36.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:36.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.343][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:36.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:36.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.346][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:36.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:36.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.350][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:36.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:36.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.353][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:36.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:36.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.356][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:36.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:36.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.360][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:36.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:36.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.363][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:36.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:36.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.366][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:36.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:36.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.370][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:36.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:36.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.373][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:36.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:36.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.376][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:36.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:36.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.380][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:36.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:36.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.383][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:36.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:36.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.386][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:36.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:36.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.389][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:36.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:36.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.392][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:36.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:36.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.401][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:36.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:36.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.404][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:36.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:36.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.407][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:36.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:36.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.410][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:36.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:36.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.413][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:36.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:36.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.416][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:36.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:36.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.419][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:36.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:36.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.422][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:36.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:36.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.425][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:36.426][private$selectFields]
biodb.TRACE[2025-03-15 16:05:36.427][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:36.428][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:36.428][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:36.429][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:36.430][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:36.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.431][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.432][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:36.433][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:36.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.435][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.435][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:36.436][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:36.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.438][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.439][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:36.440][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:36.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.441][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.442][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:36.443][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:36.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.444][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.445][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:36.446][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:36.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.447][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.448][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:36.449][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:36.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.450][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.451][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:36.452][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:36.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.453][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.454][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:36.455][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:36.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.456][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.457][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:36.458][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:36.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.459][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.460][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:36.461][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:36.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.463][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.463][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:36.464][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:36.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.466][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.467][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:36.468][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:36.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.469][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.470][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:36.471][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:36.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.472][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.473][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:36.474][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:36.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.475][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.476][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:36.477][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:36.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.479][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.480][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:36.480][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:36.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.482][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.483][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:36.484][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:36.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.485][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.486][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:36.487][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:36.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.489][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.489][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:36.490][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:36.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.492][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.492][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:36.493][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:36.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.495][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.496][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:36.496][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:36.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.498][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.499][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:36.499][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:36.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.501][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.502][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:36.503][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:36.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.504][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.505][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:36.506][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:36.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.507][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.508][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:36.508][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:36.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.510][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.510][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-03-15 16:05:36.511][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-03-15 16:05:36.512][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:36.513][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:36.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.514][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.515][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:36.515][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:36.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.517][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.518][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:36.519][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:36.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.520][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.521][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:36.522][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:36.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.523][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.524][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:36.525][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:36.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.527][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.527][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:36.528][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:36.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.530][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.530][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:36.531][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:36.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.533][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.533][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:36.534][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:36.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.536][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.537][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:36.537][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:36.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.539][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.540][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:36.540][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:36.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.542][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.542][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:36.543][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:36.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.545][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.546][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-03-15 16:05:36.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:36.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:36.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.549][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:36.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:36.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:36.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:36.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.555][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:36.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:36.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.558][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:36.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:36.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.561][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:36.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:36.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.565][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:36.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:36.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.568][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:36.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:36.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.571][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:36.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:36.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.574][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:36.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:36.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.577][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:36.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:36.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.580][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:36.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:36.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.584][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:36.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:36.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.587][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:36.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:36.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.590][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:36.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:36.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.593][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:36.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:36.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.597][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:36.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:36.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.600][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:36.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:36.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.603][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:36.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:36.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.606][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:36.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:36.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.610][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:36.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:36.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.613][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:36.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:36.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.616][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:36.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:36.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.620][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:36.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:36.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.623][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:36.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:36.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.626][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:36.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:36.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.629][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:36.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:36.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.633][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:36.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:36.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.636][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:36.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:36.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.640][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:36.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:36.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.644][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:36.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:36.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.647][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:36.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:36.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.651][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:36.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:36.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.658][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [71954, 0, 71954, C18H21F3N6O2, InChI=1S/C18H21F3N6O2/c19-18(20,21)13-9-15(22)23-11-12(13)14-10-16(26-1-5-28-6-2-26)25-17(24-14)27-3-7-29-8-4-27/h9-11H,1-8H2,(H2,22,23), ...].
biodb.DEBUG[2025-03-15 16:05:36.659][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:36.660][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:36.661][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:36.674][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:36.675][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:36.676][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:36.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:36.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:36.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:36.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:36.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:36.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.684][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:36.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:36.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.687][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:36.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:36.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.690][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:36.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:36.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.693][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:36.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:36.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.697][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:36.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:36.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.699][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:36.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:36.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.703][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:36.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:36.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.706][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:36.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:36.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.708][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:36.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:36.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.711][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:36.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:36.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.715][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:36.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:36.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.718][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:36.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:36.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.721][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:36.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:36.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.724][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:36.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:36.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.727][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:36.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:36.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.730][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:36.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:36.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.733][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:36.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:36.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.736][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:36.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:36.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.739][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:36.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:36.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.742][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:36.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:36.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.745][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:36.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:36.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.748][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:36.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:36.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.751][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:36.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:36.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.754][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:36.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:36.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.757][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:36.758][private$selectFields]
biodb.TRACE[2025-03-15 16:05:36.759][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:36.759][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:36.760][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:36.761][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:36.762][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:36.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.763][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.764][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:36.765][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:36.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.766][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.767][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:36.768][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:36.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.769][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.770][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:36.771][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:36.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.773][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.773][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:36.774][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:36.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.776][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.776][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:36.777][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:36.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.779][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.779][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:36.780][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:36.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.781][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.782][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:36.783][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:36.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.784][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.785][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:36.786][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:36.786][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.787][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.788][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:36.788][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:36.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.790][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.790][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:36.791][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:36.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.793][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.793][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:36.794][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:36.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.796][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.796][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:36.797][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:36.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.798][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.799][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:36.800][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:36.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.801][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.802][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:36.803][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:36.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.805][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.806][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:36.807][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:36.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.808][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.809][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:36.810][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:36.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.811][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.812][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:36.812][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:36.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.814][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.815][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:36.816][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:36.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.817][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.818][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:36.819][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:36.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.820][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.821][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:36.822][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:36.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.823][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.824][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:36.825][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:36.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.826][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.827][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:36.828][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:36.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.830][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.831][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:36.831][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:36.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.833][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.834][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:36.835][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:36.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.836][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.837][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:36.838][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:36.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.839][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.840][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-03-15 16:05:36.841][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-03-15 16:05:36.842][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:36.843][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:36.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.844][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.845][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:36.846][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:36.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.847][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.848][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:36.849][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:36.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.850][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.851][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:36.852][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:36.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.853][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.854][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:36.855][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:36.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.856][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.857][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:36.858][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:36.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.859][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.860][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:36.861][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:36.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.862][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.863][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:36.864][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:36.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.866][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.866][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:36.867][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:36.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.869][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.869][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:36.870][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:36.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.872][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.873][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:36.873][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:36.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.875][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.875][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-03-15 16:05:36.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:36.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:36.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:36.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:36.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:36.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:36.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.886][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:36.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:36.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.889][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:36.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:36.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.892][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:36.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:36.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.896][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:36.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:36.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.899][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:36.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:36.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.902][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:36.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:36.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.905][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:36.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:36.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.908][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:36.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:36.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.911][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:36.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:36.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.914][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:36.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:36.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.918][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:36.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:36.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.920][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:36.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:36.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.924][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:36.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:36.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.927][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:36.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:36.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.931][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:36.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:36.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.939][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:36.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:36.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.943][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:36.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:36.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.947][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:36.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:36.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.950][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:36.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:36.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.953][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:36.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:36.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.956][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:36.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:36.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.959][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:36.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:36.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.962][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:36.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:36.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.966][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:36.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:36.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.968][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:36.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:36.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.972][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:36.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:36.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.974][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:36.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:36.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.978][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:36.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:36.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.981][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:36.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:36.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.984][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:36.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:36.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:36.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:36.991][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [197612, 0, 197612, C18H18O9S, InChI=1S/C18H18O9S/c1-7-3-9(19)13-11(4-7)27-16-8(14(13)21)5-12(28-16)18(25,17(24)26-2)6-10(20)15(22)23/h3-4,10,12,19-20,25H,5-6H2,1-2H3,(H,22,23)/t10-,12+,18?/m1/s1, ...].
biodb.DEBUG[2025-03-15 16:05:36.992][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:05:36.993][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-03-15 16:05:36.998][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:36.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.001][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.004][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.007][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.011][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.014][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.016][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.020][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.023][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.026][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.030][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.033][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:37.038][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:37.038][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:37.039][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:37.044][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:37.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:37.045][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:37.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:37.048][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:05:37.050][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:05:37.051][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-03-15 16:05:37.052][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:05:37.054][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-03-15 16:05:37.056][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:05:37.058][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:05:37.059][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-03-15 16:05:37.060][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:05:37.061][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-03-15 16:05:37.063][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:37.064][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:37.064][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:37.069][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:37.070][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:37.071][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:37.072][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:37.073][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.076][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.079][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:37.083][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:37.083][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:37.084][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:37.089][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:37.090][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:37.091][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:37.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:37.092][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.095][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.098][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:37.102][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:37.102][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:37.103][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:37.108][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:37.109][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:37.109][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:37.110][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:37.111][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.128][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.132][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:37.135][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:05:37.137][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:37.137][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:37.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:37.143][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:37.144][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:37.147][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:37.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:37.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:37.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:37.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:37.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:37.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.156][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:37.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:37.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.159][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:37.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:37.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.162][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:37.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:37.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.166][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:37.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:37.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.169][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:37.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:37.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.172][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:37.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:37.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.175][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:37.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:37.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.178][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:37.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:37.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.181][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:37.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:37.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.184][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:37.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:37.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.187][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:37.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:37.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.190][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:37.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:37.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.193][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:37.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:37.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.196][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:37.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:37.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.199][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.202][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.205][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:37.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:37.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.208][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:37.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:37.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.212][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:37.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:37.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.215][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:37.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:37.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.218][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:37.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:37.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.221][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:37.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:37.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.224][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:37.225][private$selectFields]
biodb.TRACE[2025-03-15 16:05:37.225][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:37.226][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:37.227][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:37.228][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:37.229][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:37.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.236][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.237][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:37.238][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:37.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.239][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.240][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:37.241][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:37.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.242][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.243][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:37.244][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:37.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.246][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.246][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:37.247][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:37.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.249][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.249][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:37.250][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:37.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.252][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.252][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:37.253][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:37.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.255][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.256][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:37.256][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:37.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.258][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.259][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.260][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.261][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.262][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:37.262][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:37.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.264][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.265][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:37.265][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:37.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.267][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.268][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:37.268][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:37.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.270][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.271][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:37.271][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:37.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.273][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.273][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:37.274][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:37.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.275][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.276][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:37.277][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:37.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.279][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.280][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:37.280][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:37.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.282][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.282][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:37.283][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:37.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.284][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.285][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:37.286][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:37.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.288][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.288][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:37.289][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:37.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.291][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.291][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:37.292][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:37.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.293][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.294][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.295][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.297][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.297][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:37.298][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:37.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.300][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.300][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:37.301][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:37.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.303][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.303][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:37.304][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:37.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.306][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.306][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:37.307][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:37.308][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:37.309][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:37.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.310][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.311][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:37.312][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:37.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.313][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.314][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:37.315][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:37.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.317][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.317][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:37.318][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:37.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.320][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.320][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:37.321][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:37.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.323][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.323][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:37.324][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:37.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.326][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.327][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:37.328][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:37.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.329][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.330][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:37.331][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:37.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.332][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.333][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.334][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.335][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.336][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:37.337][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:37.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.338][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.339][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:37.340][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:37.341][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.341][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.342][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:37.343][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:37.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.344][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.345][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-03-15 16:05:37.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:37.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:37.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:37.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:37.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:37.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:37.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.355][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:37.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:37.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.359][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:37.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:37.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.362][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:37.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:37.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.365][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:37.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:37.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.368][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:37.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:37.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.372][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:37.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:37.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.375][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:37.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:37.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.378][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:37.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:37.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.381][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:37.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:37.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.384][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:37.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:37.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.387][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:37.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:37.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.390][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:37.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:37.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.393][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:37.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:37.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.397][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:37.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:37.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.400][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:37.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:37.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.403][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:37.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:37.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.406][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:37.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:37.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.409][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:37.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:37.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.413][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:37.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:37.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.416][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:37.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:37.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.419][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:37.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:37.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.422][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.426][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.429][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.433][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:37.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:37.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.436][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:37.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:37.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.439][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:37.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:37.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.442][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:37.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:37.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.446][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:37.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:37.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.449][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:37.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:37.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.452][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:37.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:37.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.455][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:37.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:37.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.459][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:37.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:37.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.467][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4648, 0, 4648, C30H50, InChI=1S/C30H50/c1-20(2)21-12-17-27(5)22(21)13-18-29(7)24(27)10-11-25-28(6)16-9-15-26(3,4)23(28)14-19-30(25,29)8/h21-25H,1,9-19H2,2-8H3/t21-,22+,23+,24-,25-,27+,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2025-03-15 16:05:37.468][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:37.468][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:37.469][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:37.474][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:37.475][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:37.476][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:37.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:37.478][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:37.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:37.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:37.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:37.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.485][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:37.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:37.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.488][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:37.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:37.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.491][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:37.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:37.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.494][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:37.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:37.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.498][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:37.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:37.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.501][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:37.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:37.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.509][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:37.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:37.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.512][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:37.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:37.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.515][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:37.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:37.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.519][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:37.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:37.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.522][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:37.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:37.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.525][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:37.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:37.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.528][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:37.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:37.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.531][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:37.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:37.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.534][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.538][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.541][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:37.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:37.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.544][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:37.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:37.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.547][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:37.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:37.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.550][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:37.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:37.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.553][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:37.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:37.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.556][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:37.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:37.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.559][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:37.560][private$selectFields]
biodb.TRACE[2025-03-15 16:05:37.561][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:37.561][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:37.562][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:37.563][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:37.564][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:37.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.566][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.566][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:37.567][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:37.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.569][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.569][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:37.570][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:37.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.572][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.573][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:37.573][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:37.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.575][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.576][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:37.576][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:37.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.578][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.579][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:37.580][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:37.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.581][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.582][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:37.583][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:37.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.584][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.585][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:37.585][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:37.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.587][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.588][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.589][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.590][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.591][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:37.592][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:37.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.593][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.594][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:37.594][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:37.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.596][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.596][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:37.597][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:37.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.599][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.600][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:37.600][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:37.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.602][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.602][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:37.603][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:37.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.604][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.605][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:37.606][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:37.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.607][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.608][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:37.609][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:37.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.610][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.611][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:37.611][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:37.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.613][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.614][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:37.614][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:37.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.616][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.617][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:37.618][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:37.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.619][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.620][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:37.621][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:37.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.622][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.623][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.623][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.625][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.625][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:37.626][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:37.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.627][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.628][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:37.629][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:37.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.630][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.631][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:37.632][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:37.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.633][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.634][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:37.635][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:37.635][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:37.636][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:37.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.638][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.639][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:37.639][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:37.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.641][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.641][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:37.642][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:37.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.643][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.644][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:37.645][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:37.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.647][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.647][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:37.648][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:37.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.649][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.650][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:37.651][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:37.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.652][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.653][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:37.654][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:37.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.655][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.656][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:37.657][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:37.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.658][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.659][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.660][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.661][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.662][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:37.663][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:37.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.665][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.665][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:37.666][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:37.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.668][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.668][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:37.669][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:37.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.671][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.672][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-03-15 16:05:37.672][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:37.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:37.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:37.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:37.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:37.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:37.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.682][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:37.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:37.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.685][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:37.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:37.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.688][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:37.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:37.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.691][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:37.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:37.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.694][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:37.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:37.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.697][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:37.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:37.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.700][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:37.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:37.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.703][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:37.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:37.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.706][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:37.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:37.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.709][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:37.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:37.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.712][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:37.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:37.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.715][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:37.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:37.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.718][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:37.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:37.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.721][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:37.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:37.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.724][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:37.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:37.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.727][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:37.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:37.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.730][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:37.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:37.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.733][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:37.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:37.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.736][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:37.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:37.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.739][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:37.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:37.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.742][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:37.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:37.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.745][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.748][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.751][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.754][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:37.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:37.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.757][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:37.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:37.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.760][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:37.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:37.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.767][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:37.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:37.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.770][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:37.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:37.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.773][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:37.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:37.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.776][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:37.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:37.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.779][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:37.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:37.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.782][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:37.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:37.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.789][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2025-03-15 16:05:37.790][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:37.791][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:37.791][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:37.796][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:37.796][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:37.797][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:37.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:37.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:37.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:37.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:37.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:37.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.805][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:37.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:37.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.808][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:37.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:37.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.811][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:37.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:37.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.813][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:37.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:37.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.817][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:37.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:37.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.820][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:37.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:37.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.823][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:37.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:37.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.826][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:37.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:37.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.829][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:37.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:37.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.832][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:37.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:37.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.835][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:37.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:37.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.838][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:37.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:37.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.841][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:37.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:37.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.845][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:37.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:37.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.848][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.851][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.854][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:37.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:37.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.857][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:37.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:37.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.860][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:37.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:37.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.863][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:37.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:37.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.866][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:37.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:37.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.869][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:37.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:37.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.871][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:37.872][private$selectFields]
biodb.TRACE[2025-03-15 16:05:37.873][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:37.874][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:37.874][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:37.875][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:37.876][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:37.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.877][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.878][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:37.879][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:37.880][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.880][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.881][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:37.882][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:37.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.883][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.884][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:37.884][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:37.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.886][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.886][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:37.888][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:37.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.889][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.890][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:37.891][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:37.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.892][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.893][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:37.894][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:37.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.896][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.896][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:37.897][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:37.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.899][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.900][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.900][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.902][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.903][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:37.904][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:37.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.905][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.906][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:37.907][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:37.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.908][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.909][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:37.910][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:37.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.911][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.912][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:37.913][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:37.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.914][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.915][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:37.916][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:37.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.917][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.918][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:37.919][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:37.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.921][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.921][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:37.922][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:37.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.924][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.925][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:37.925][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:37.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.927][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.928][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:37.928][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:37.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.930][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.931][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:37.932][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:37.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.933][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.934][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:37.934][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:37.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.936][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.937][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.937][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.939][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.939][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:37.940][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:37.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.942][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.942][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:37.943][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:37.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.944][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.945][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:37.946][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:37.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.948][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.948][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-03-15 16:05:37.949][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-03-15 16:05:37.950][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:37.950][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:37.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.952][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.953][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:37.953][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:37.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.955][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.955][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:37.956][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:37.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.958][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.959][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:37.959][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:37.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.961][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.961][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:37.962][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:37.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.963][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.964][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:37.965][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:37.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.966][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.967][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:37.968][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:37.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.969][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.970][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.971][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:37.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.972][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.973][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:37.974][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:37.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.976][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.976][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:37.977][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:37.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.978][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.979][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:37.980][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:37.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.982][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.982][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-03-15 16:05:37.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:37.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:37.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.987][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:37.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:37.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:37.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:37.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.993][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:37.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:37.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:37.997][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:37.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:37.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:37.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.000][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:38.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:38.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.003][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:38.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:38.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.007][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:38.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:38.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.010][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:38.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:38.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.013][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:38.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:38.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.017][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:38.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:38.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.020][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:38.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:38.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.028][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:38.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:38.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.031][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:38.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:38.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.034][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:38.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:38.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.037][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:38.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:38.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.040][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:38.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:38.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.043][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:38.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:38.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.046][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:38.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:38.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.049][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:38.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:38.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.052][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:38.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:38.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.056][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:38.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:38.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.059][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:38.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:38.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.062][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:38.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:38.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.065][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:38.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:38.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.068][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:38.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:38.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.072][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:38.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:38.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.075][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:38.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:38.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.078][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:38.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:38.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.082][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:38.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:38.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.085][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:38.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:38.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.088][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:38.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:38.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.091][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:38.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:38.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.098][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [62447, 0, 62447, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-29(7)24(23)13-14-26-28(6)18-10-17-27(4,5)25(28)16-20-30(26,29)8/h11,23-26H,3,9-10,12-20H2,1-2,4-8H3/t23-,24-,25+,26-,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2025-03-15 16:05:38.099][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:05:38.099][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:05:38.102][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:38.103][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:38.103][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:38.108][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:38.109][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:38.109][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:38.110][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:38.112][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:05:38.115][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:05:38.116][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2025-03-15 16:05:38.117][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:05:38.118][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2025-03-15 16:05:38.120][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:38.121][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:38.121][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:38.126][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:38.127][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:38.128][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:38.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:38.129][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:38.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:38.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.132][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:38.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:38.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.135][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:38.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:38.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:38.138][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:38.139][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:38.139][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:38.144][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:38.145][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:38.145][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:38.146][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:38.147][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:38.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:38.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.150][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:38.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:38.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.153][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:38.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:38.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:38.156][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:38.157][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:38.158][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:38.162][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:38.163][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:38.164][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:38.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:38.166][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:38.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:38.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.169][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:38.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:38.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.172][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:38.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:38.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:38.176][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:05:38.177][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:38.178][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:38.178][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:38.183][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:38.184][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:38.185][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:38.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:38.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:38.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:38.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:38.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:38.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.193][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:38.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:38.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.197][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:38.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:38.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:38.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:38.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.203][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:38.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:38.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.206][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:38.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:38.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.209][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:38.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:38.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.213][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:38.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:38.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.216][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:38.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:38.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.219][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:38.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:38.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.222][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:38.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:38.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.225][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:38.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:38.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.228][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:38.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:38.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.232][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:38.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:38.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.235][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:38.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:38.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.238][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:38.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:38.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.241][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:38.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:38.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.244][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:38.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:38.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.248][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:38.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:38.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.251][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:38.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:38.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.254][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:38.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:38.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.257][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:38.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:38.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.260][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:38.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:38.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.263][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:38.264][private$selectFields]
biodb.TRACE[2025-03-15 16:05:38.265][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:38.265][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:38.266][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:38.267][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:38.268][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:38.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.269][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.270][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:38.271][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:38.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.273][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.273][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:38.274][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:38.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.276][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.277][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:38.277][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:38.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.279][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.280][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:38.280][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:38.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.282][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.283][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:38.284][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:38.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.285][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.286][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:38.287][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:38.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.288][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.289][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:38.290][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:38.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.291][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.292][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:38.293][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:38.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.294][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.295][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:38.296][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:38.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.302][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.303][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:38.304][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:38.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.306][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.306][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:38.307][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:38.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.309][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.310][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:38.310][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:38.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.312][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.313][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:38.314][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:38.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.315][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.316][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:38.317][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:38.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.318][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.319][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:38.320][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:38.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.321][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.322][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:38.323][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:38.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.324][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.325][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:38.326][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:38.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.328][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.328][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:38.329][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:38.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.331][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.331][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:38.332][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:38.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.334][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.335][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:38.335][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:38.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.337][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.338][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:38.339][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:38.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.340][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.341][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:38.342][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:38.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.343][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.344][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:38.345][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:38.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.347][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.348][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:38.349][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:38.349][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:38.350][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:38.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.352][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.353][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:38.353][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:38.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.355][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.356][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:38.356][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:38.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.358][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.359][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:38.360][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:38.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.361][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.362][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:38.362][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:38.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.364][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.365][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:38.366][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:38.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.367][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.368][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:38.369][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:38.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.370][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.371][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:38.372][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:38.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.373][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.374][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:38.375][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:38.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.376][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.377][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:38.377][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:38.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.379][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.379][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:38.380][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:38.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.381][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.382][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:38.383][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:38.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.384][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.385][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-03-15 16:05:38.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:38.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:38.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:38.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:38.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:38.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:38.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.395][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:38.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:38.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.398][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:38.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:38.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.401][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:38.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:38.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.405][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:38.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:38.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.408][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:38.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:38.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.411][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:38.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:38.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.414][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:38.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:38.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.417][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:38.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:38.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.420][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:38.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:38.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.423][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:38.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:38.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.427][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:38.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:38.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.430][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:38.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:38.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.433][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:38.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:38.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.436][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:38.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:38.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.440][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:38.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:38.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.443][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:38.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:38.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.446][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:38.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:38.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.449][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:38.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:38.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.453][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:38.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:38.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.456][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:38.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:38.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.459][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:38.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:38.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.462][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:38.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:38.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.465][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:38.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:38.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.468][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:38.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:38.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.471][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:38.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:38.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.474][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:38.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:38.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.477][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:38.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:38.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.480][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:38.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:38.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.483][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:38.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:38.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.487][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:38.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:38.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.490][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:38.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:38.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.493][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:38.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:38.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.496][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:38.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:38.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.503][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2025-03-15 16:05:38.504][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:38.505][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:38.505][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:38.510][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:38.511][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:38.512][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:38.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:38.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:38.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:38.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:38.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:38.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.520][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:38.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:38.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.523][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:38.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:38.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.526][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:38.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:38.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.529][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:38.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:38.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.532][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:38.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:38.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.535][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:38.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:38.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.539][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:38.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:38.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.542][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:38.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:38.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.545][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:38.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:38.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.548][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:38.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:38.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.551][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:38.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:38.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.554][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:38.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:38.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.557][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:38.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:38.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.560][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:38.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:38.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.569][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:38.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:38.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.572][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:38.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:38.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.575][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:38.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:38.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.578][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:38.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:38.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.582][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:38.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:38.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.585][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:38.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:38.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.588][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:38.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:38.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.591][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:38.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:38.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.594][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:38.595][private$selectFields]
biodb.TRACE[2025-03-15 16:05:38.595][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:38.596][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:38.597][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:38.597][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:38.598][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:38.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.600][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.600][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:38.601][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:38.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.602][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.603][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:38.604][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:38.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.605][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.606][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:38.607][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:38.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.608][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.609][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:38.610][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:38.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.611][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.612][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:38.613][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:38.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.614][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.615][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:38.615][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:38.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.617][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.618][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:38.618][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:38.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.620][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.621][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:38.621][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:38.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.623][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.624][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:38.625][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:38.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.626][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.627][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:38.628][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:38.628][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.629][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.630][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:38.630][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:38.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.632][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.633][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:38.634][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:38.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.635][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.636][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:38.637][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:38.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.638][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.639][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:38.640][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:38.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.641][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.642][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:38.643][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:38.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.644][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.645][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:38.646][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:38.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.647][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.648][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:38.649][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:38.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.650][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.651][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:38.652][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:38.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.653][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.654][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:38.655][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:38.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.656][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.657][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:38.658][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:38.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.659][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.660][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:38.661][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:38.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.662][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.663][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:38.664][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:38.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.666][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.667][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:38.667][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:38.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.669][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.670][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-03-15 16:05:38.670][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-03-15 16:05:38.671][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:38.672][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:38.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.673][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.674][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:38.675][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:38.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.676][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.677][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:38.678][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:38.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.680][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.680][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:38.681][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:38.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.683][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.683][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:38.684][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:38.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.686][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.687][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:38.688][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:38.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.689][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.690][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:38.691][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:38.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.693][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.694][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:38.695][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:38.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.696][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.697][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:38.698][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:38.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.699][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.700][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:38.701][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:38.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.702][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.703][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:38.704][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:38.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.706][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.707][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-03-15 16:05:38.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:38.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:38.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:38.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:38.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:38.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:38.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.717][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:38.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:38.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.720][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:38.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:38.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.724][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:38.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:38.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.727][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:38.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:38.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.730][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:38.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:38.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.734][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:38.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:38.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.737][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:38.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:38.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.740][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:38.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:38.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.743][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:38.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:38.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.746][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:38.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:38.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.749][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:38.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:38.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.752][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:38.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:38.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.755][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:38.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:38.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.758][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:38.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:38.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.761][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:38.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:38.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.765][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:38.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:38.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.768][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:38.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:38.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.771][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:38.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:38.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.774][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:38.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:38.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.777][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:38.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:38.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.780][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:38.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:38.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.783][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:38.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:38.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.787][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:38.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:38.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.789][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:38.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:38.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.793][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:38.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:38.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.796][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:38.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:38.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.799][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:38.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:38.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.802][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:38.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:38.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.806][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:38.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:38.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.809][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:38.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:38.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.816][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [91601, 0, 91601, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24?,25?/m0/s1, ...].
biodb.DEBUG[2025-03-15 16:05:38.817][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:38.818][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:38.819][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:38.823][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:38.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:38.825][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:38.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:38.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:38.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:38.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:38.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:38.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.839][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:38.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:38.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.843][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:38.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:38.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.846][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:38.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:38.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.849][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:38.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:38.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.852][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:38.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:38.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.855][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:38.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:38.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.858][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:38.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:38.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.861][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:38.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:38.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.865][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:38.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:38.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.868][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:38.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:38.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.871][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:38.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:38.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.874][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:38.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:38.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.877][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:38.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:38.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.880][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:38.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:38.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.883][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:38.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:38.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.886][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:38.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:38.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.890][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:38.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:38.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.893][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:38.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:38.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.896][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:38.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:38.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.900][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:38.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:38.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.903][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:38.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:38.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.906][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:38.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:38.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.909][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:38.910][private$selectFields]
biodb.TRACE[2025-03-15 16:05:38.911][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:38.912][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:38.913][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:38.913][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:38.914][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:38.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.916][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.917][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:38.917][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:38.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.919][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.920][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:38.920][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:38.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.922][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.923][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:38.924][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:38.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.925][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.926][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:38.927][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:38.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.928][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.929][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:38.930][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:38.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.931][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.932][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:38.933][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:38.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.934][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.935][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:38.936][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:38.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.937][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.938][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:38.939][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:38.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.941][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.941][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:38.942][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:38.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.944][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.945][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:38.945][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:38.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.947][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.948][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:38.948][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:38.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.950][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.951][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:38.951][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:38.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.953][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.954][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:38.954][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:38.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.956][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.957][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:38.957][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:38.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.959][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.960][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:38.961][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:38.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.962][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.963][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:38.963][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:38.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.965][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.966][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:38.966][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:38.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.968][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.968][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:38.970][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:38.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.971][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.972][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:38.973][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:38.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.974][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.975][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:38.976][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:38.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.977][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.978][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:38.979][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:38.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.980][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.981][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:38.982][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:38.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.983][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.984][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:38.985][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:38.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.986][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.987][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-03-15 16:05:38.988][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-03-15 16:05:38.989][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:38.989][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:38.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.991][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.992][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:38.992][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:38.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.994][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.995][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:38.995][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:38.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:38.997][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:38.997][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:38.998][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:38.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.000][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.000][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:39.001][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:39.002][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.002][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.003][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:39.004][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:39.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.005][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.006][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:39.007][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:39.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.008][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.009][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:39.009][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:39.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.011][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.011][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:39.012][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:39.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.014][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.014][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:39.016][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:39.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.017][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.018][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:39.019][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:39.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.020][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.021][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-03-15 16:05:39.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:39.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:39.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:39.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:39.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:39.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:39.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.031][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:39.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:39.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.035][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:39.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:39.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.038][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:39.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:39.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:39.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:39.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.045][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:39.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:39.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.048][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:39.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:39.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.051][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:39.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:39.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.055][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:39.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:39.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.058][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:39.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:39.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.061][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:39.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:39.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.064][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:39.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:39.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.067][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:39.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:39.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.071][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:39.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:39.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.074][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:39.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:39.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.077][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:39.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:39.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.080][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:39.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:39.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.083][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:39.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:39.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.086][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:39.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:39.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.090][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:39.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:39.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.092][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:39.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:39.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.095][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:39.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:39.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.105][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:39.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:39.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.108][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:39.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:39.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.111][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:39.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:39.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.115][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:39.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:39.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.118][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:39.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:39.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.121][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:39.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:39.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.124][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:39.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:39.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.128][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:39.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:39.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.131][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:39.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:39.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.138][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [95147, 0, 95147, C29H40N2O4, InChI=1S/C29H40N2O4/c1-3-18-16(2)14-22-20(18)10-11-21-19-6-4-8-26(33)30-13-5-7-24-28(34)27(29(35)31-24)25(32)12-9-17(19)15-23(21)22/h4,8,10-11,16-24,27H,3,5-7,9,12-15H2,1-2H3,(H,30,33)(H,31,35)/t16-,17-,18-,19+,20+,21-,22+,23+,24+,27?/m1/s1, ...].
biodb.DEBUG[2025-03-15 16:05:39.139][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:05:39.140][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:05:39.142][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:39.143][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:39.143][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:39.148][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:39.149][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:39.150][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:39.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:39.153][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:05:39.155][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:05:39.156][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2025-03-15 16:05:39.157][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:05:39.158][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2025-03-15 16:05:39.160][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:39.161][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:39.162][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:39.167][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:39.167][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:39.168][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:39.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:39.170][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:39.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:39.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.173][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:39.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:39.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.176][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:39.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:39.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:39.179][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:39.180][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:39.181][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:39.186][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:39.187][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:39.187][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:39.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:39.189][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:39.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:39.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.192][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:39.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:39.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.195][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:39.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:39.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:39.199][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:39.199][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:39.200][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:39.205][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:39.205][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:39.206][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:39.207][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:39.208][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:39.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:39.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.211][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:39.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:39.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.213][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:39.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:39.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:39.217][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:05:39.218][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:39.219][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:39.220][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:39.225][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:39.225][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:39.226][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:39.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:39.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:39.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:39.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:39.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:39.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.233][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:39.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:39.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.236][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:39.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:39.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.239][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:39.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:39.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.242][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:39.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:39.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.246][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:39.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:39.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.249][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:39.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:39.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.252][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:39.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:39.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.255][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:39.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:39.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.258][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:39.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:39.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.261][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:39.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:39.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.264][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:39.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:39.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.267][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:39.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:39.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.271][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:39.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:39.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.274][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:39.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:39.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:39.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:39.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.280][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:39.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:39.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.283][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:39.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:39.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.286][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:39.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:39.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.289][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:39.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:39.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.292][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:39.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:39.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.296][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:39.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:39.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.299][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:39.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:39.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.302][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:39.303][private$selectFields]
biodb.TRACE[2025-03-15 16:05:39.303][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:39.304][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:39.305][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:39.306][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:39.306][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:39.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.308][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.308][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:39.309][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:39.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.311][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.311][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:39.312][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:39.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.314][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.314][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:39.315][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:39.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.317][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.317][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:39.318][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:39.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.320][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.321][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:39.321][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:39.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.323][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.323][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:39.324][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:39.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.326][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.326][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:39.327][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:39.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.329][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.329][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:39.330][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:39.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.332][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.333][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:39.333][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:39.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.335][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.336][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:39.337][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:39.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.338][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.339][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:39.340][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:39.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.341][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.342][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:39.343][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:39.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.344][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.345][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:39.345][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:39.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.347][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.348][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:39.349][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:39.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.350][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.351][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:39.352][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:39.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.353][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.354][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:39.355][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:39.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.356][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.357][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:39.357][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:39.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.359][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.360][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:39.360][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:39.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.362][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.362][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:39.363][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:39.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.365][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.366][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:39.367][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:39.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.368][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.369][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:39.370][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:39.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.376][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.377][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:39.378][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:39.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.379][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.380][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:39.381][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:39.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.382][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.383][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:39.384][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:39.384][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:39.385][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:39.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.387][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.387][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:39.388][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:39.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.390][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.391][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:39.392][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:39.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.393][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.394][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:39.395][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:39.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.396][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.397][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:39.398][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:39.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.400][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.400][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:39.401][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:39.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.402][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.403][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:39.404][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:39.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.405][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.406][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:39.407][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:39.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.409][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.409][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:39.410][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:39.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.411][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.412][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:39.413][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:39.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.414][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.415][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:39.416][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:39.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.417][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.418][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:39.418][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:39.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.420][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.421][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-03-15 16:05:39.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:39.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:39.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:39.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:39.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:39.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:39.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.431][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:39.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:39.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.435][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:39.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:39.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.438][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:39.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:39.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.441][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:39.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:39.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.444][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:39.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:39.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.448][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:39.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:39.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.451][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:39.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:39.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.470][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:39.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:39.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.474][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:39.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:39.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.477][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:39.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:39.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.481][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:39.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:39.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.489][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:39.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:39.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.492][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:39.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:39.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.495][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:39.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:39.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.498][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:39.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:39.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.501][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:39.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:39.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.504][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:39.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:39.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.507][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:39.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:39.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.510][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:39.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:39.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.513][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:39.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:39.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.516][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:39.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:39.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.520][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:39.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:39.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.523][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:39.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:39.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.526][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:39.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:39.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.529][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:39.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:39.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.533][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:39.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:39.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.536][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:39.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:39.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.539][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:39.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:39.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.543][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:39.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:39.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.546][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:39.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:39.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.549][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:39.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:39.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.552][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:39.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:39.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.556][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:39.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:39.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.564][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [636, 0, 636, C24H26O6, InChI=1S/C24H26O6/c1-12(2)6-7-14-19-17(11-16(26)22(14)28-5)29-18-10-15(25)13-8-9-24(3,4)30-23(13)20(18)21(19)27/h6,10-11,25-26H,7-9H2,1-5H3, ...].
biodb.DEBUG[2025-03-15 16:05:39.565][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:39.566][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:39.567][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:39.571][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:39.572][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:39.573][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:39.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:39.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:39.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:39.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.578][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:39.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:39.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.581][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:39.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:39.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.584][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:39.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:39.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.587][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:39.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:39.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.590][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:39.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:39.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.593][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:39.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:39.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.596][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:39.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:39.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.600][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:39.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:39.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.603][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:39.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:39.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.606][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:39.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:39.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.610][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:39.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:39.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.613][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:39.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:39.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.616][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:39.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:39.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.619][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:39.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:39.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.623][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:39.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:39.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.626][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:39.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:39.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.629][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:39.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:39.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.632][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:39.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:39.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.635][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:39.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:39.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.638][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:39.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:39.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.641][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:39.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:39.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.645][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:39.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:39.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.648][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:39.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:39.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.651][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:39.651][private$selectFields]
biodb.TRACE[2025-03-15 16:05:39.652][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:39.653][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:39.654][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:39.655][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:39.656][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:39.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.657][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.658][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:39.659][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:39.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.660][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.661][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:39.666][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:39.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.668][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.669][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:39.670][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:39.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.671][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.672][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:39.673][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:39.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.674][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.675][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:39.676][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:39.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.677][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.678][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:39.679][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:39.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.680][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.681][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:39.682][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:39.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.683][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.684][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:39.685][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:39.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.686][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.687][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:39.688][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:39.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.689][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.690][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:39.690][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:39.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.692][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.692][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:39.693][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:39.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.694][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.695][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:39.696][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:39.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.697][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.698][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:39.699][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:39.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.700][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.701][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:39.701][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:39.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.703][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.703][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:39.704][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:39.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.706][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.707][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:39.707][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:39.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.709][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.709][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:39.710][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:39.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.712][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.712][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:39.713][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:39.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.715][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.715][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:39.716][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:39.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.718][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.718][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:39.719][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:39.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.720][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.721][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:39.722][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:39.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.723][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.724][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:39.725][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:39.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.727][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.727][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:39.728][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:39.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.730][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.731][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-03-15 16:05:39.731][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-03-15 16:05:39.732][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:39.733][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:39.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.735][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.735][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:39.736][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:39.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.738][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.738][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:39.739][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:39.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.740][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.741][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:39.742][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:39.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.743][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.744][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:39.744][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:39.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.746][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.746][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:39.747][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:39.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.749][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.750][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:39.751][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:39.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.752][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.753][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:39.753][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:39.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.755][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.756][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:39.756][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:39.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.758][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.759][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:39.759][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:39.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.761][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.762][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:39.762][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:39.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.764][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.765][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-03-15 16:05:39.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:39.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:39.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:39.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:39.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:39.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:39.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.775][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:39.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:39.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.779][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:39.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:39.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.782][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:39.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:39.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.785][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:39.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:39.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.789][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:39.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:39.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.792][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:39.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:39.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.795][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:39.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:39.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.799][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:39.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:39.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.802][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:39.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:39.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.805][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:39.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:39.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.809][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:39.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:39.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.812][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:39.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:39.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.815][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:39.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:39.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.818][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:39.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:39.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.821][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:39.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:39.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.825][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:39.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:39.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.828][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:39.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:39.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.831][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:39.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:39.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.835][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:39.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:39.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.838][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:39.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:39.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.841][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:39.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:39.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.845][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:39.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:39.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.848][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:39.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:39.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.851][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:39.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:39.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.854][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:39.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:39.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.857][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:39.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:39.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.860][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:39.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:39.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.864][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:39.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:39.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.867][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:39.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:39.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.870][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:39.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:39.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.877][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [64199, 0, 64199, C24H27ClN2O2, InChI=1S/C24H26N2O2.ClH/c27-24(28)20-9-10-23-22(16-20)21(17-25-23)8-4-5-13-26-14-11-19(12-15-26)18-6-2-1-3-7-18;/h1-3,6-7,9-11,16-17,25H,4-5,8,12-15H2,(H,27,28);1H, ...].
biodb.DEBUG[2025-03-15 16:05:39.878][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:39.879][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:39.880][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:39.884][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:39.885][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:39.886][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:39.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:39.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:39.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:39.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:39.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:39.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.894][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:39.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:39.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.897][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:39.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:39.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.900][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:39.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:39.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.903][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:39.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:39.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.906][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:39.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:39.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.909][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:39.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:39.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.912][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:39.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:39.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.915][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:39.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:39.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.918][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:39.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:39.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.921][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:39.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:39.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.924][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:39.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:39.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.931][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:39.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:39.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.935][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:39.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:39.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.938][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:39.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:39.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.941][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:39.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:39.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.944][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:39.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:39.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.947][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:39.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:39.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.950][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:39.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:39.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.953][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:39.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:39.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.956][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:39.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:39.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.959][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:39.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:39.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.962][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:39.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:39.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.965][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:39.965][private$selectFields]
biodb.TRACE[2025-03-15 16:05:39.966][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:39.967][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:39.968][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:39.968][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:39.969][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:39.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.971][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.971][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:39.972][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:39.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.974][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.974][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:39.975][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:39.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.976][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.977][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:39.978][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:39.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.979][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.980][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:39.981][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:39.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.982][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.983][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:39.984][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:39.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.985][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.986][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:39.986][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:39.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.988][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.988][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:39.989][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:39.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.991][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.991][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:39.992][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:39.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.994][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.994][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:39.995][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:39.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.997][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:39.997][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:39.998][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:39.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:39.999][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.000][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:40.001][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:40.002][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.002][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.003][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:40.004][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:40.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.005][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.006][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:40.006][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:40.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.008][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.008][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:40.009][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:40.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.011][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.012][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:40.012][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:40.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.014][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.014][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:40.015][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:40.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.016][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.017][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:40.018][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:40.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.019][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.020][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:40.021][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:40.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.023][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.023][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:40.024][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:40.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.026][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.027][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:40.027][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:40.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.029][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.029][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:40.030][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:40.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.032][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.033][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:40.033][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:40.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.035][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.035][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:40.036][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:40.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.038][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.038][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-03-15 16:05:40.039][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-03-15 16:05:40.040][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:40.041][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:40.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.043][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.043][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:40.044][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:40.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.046][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.046][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:40.047][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:40.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.048][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.049][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:40.050][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:40.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.051][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.052][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:40.053][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:40.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.054][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.055][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:40.056][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:40.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.057][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.058][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:40.059][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:40.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.060][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.061][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:40.062][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:40.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.063][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.064][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:40.065][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:40.065][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.066][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.067][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:40.067][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:40.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.069][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.069][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:40.070][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:40.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.072][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.072][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-03-15 16:05:40.073][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:40.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:40.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:40.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:40.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:40.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:40.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.083][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:40.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:40.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.086][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:40.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:40.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.089][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:40.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:40.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.092][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:40.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:40.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.095][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:40.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:40.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.098][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:40.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:40.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.101][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:40.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:40.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.104][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:40.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:40.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.108][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:40.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:40.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.110][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:40.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:40.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.114][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:40.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:40.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.117][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:40.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:40.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.120][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:40.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:40.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.124][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:40.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:40.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.127][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:40.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:40.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.130][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:40.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:40.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.134][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:40.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:40.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.137][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:40.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:40.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.140][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:40.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:40.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.143][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:40.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:40.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.146][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:40.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:40.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.150][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:40.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:40.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.153][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:40.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:40.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.156][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:40.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:40.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.159][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:40.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:40.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.162][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:40.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:40.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.165][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:40.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:40.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.168][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:40.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:40.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.172][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:40.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:40.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.175][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:40.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:40.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.183][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [65648, 0, 65648, C24H26O6, InChI=1S/C24H26O6/c1-13(2)9-10-23-20(27)22(28-5)11-14-19(26)18-15(25)7-6-8-16(18)29-24(14,23)17(12-22)21(3,4)30-23/h6-9,11,17,25H,10,12H2,1-5H3/t17-,22-,23-,24+/m0/s1, ...].
biodb.DEBUG[2025-03-15 16:05:40.188][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:05:40.190][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:05:40.197][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:40.197][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:40.198][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:40.203][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:40.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:40.204][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:40.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:40.207][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:05:40.210][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:05:40.211][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-03-15 16:05:40.212][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:05:40.213][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-03-15 16:05:40.215][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:05:40.218][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:05:40.219][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-03-15 16:05:40.220][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:05:40.221][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-03-15 16:05:40.223][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:40.223][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:40.224][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:40.229][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:40.230][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:40.230][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:40.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:40.232][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:40.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:40.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.235][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:40.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:40.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.238][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:40.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:40.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:40.241][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:40.241][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:40.242][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:40.247][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:40.248][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:40.249][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:40.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:40.250][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:40.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:40.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.253][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:40.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:40.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.256][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:40.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:40.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:40.259][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:40.259][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:40.260][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:40.265][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:40.266][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:40.266][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:40.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:40.268][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:40.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:40.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.271][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:40.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:40.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.274][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:40.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:40.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:40.277][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:05:40.278][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:40.279][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:40.280][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:40.284][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:40.285][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:40.286][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:40.287][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:40.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:40.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:40.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:40.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:40.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.293][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:40.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:40.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.297][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:40.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:40.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.300][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:40.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:40.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.302][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:40.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:40.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.306][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:40.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:40.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.309][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:40.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:40.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.312][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:40.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:40.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.315][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:40.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:40.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.318][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:40.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:40.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.321][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:40.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:40.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.324][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:40.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:40.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.327][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:40.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:40.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.330][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:40.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:40.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.333][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:40.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:40.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.337][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:40.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:40.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.340][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:40.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:40.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.343][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:40.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:40.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.346][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:40.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:40.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.348][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:40.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:40.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.351][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:40.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:40.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.355][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:40.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:40.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.358][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:40.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:40.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.362][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:40.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:40.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.365][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:40.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:40.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.368][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:40.369][private$selectFields]
biodb.TRACE[2025-03-15 16:05:40.370][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:40.371][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:40.371][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:40.372][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:40.373][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:40.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.374][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.375][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:40.376][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:40.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.377][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.378][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:40.379][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:40.380][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.381][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.381][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:40.382][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:40.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.383][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.384][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:40.385][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:40.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.386][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.387][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:40.388][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:40.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.389][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.390][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:40.391][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:40.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.392][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.393][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:40.393][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:40.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.395][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.396][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:40.396][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:40.397][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.398][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.398][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:40.399][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:40.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.401][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.401][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:40.402][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:40.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.404][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.404][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:40.405][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:40.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.407][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.407][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:40.408][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:40.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.409][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.410][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:40.411][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:40.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.413][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.414][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:40.414][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:40.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.416][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.417][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:40.417][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:40.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.419][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.419][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:40.420][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:40.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.422][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.422][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:40.423][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:40.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.424][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.425][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:40.426][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:40.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.427][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.428][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:40.429][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:40.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.430][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.431][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:40.432][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:40.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.434][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.434][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:40.435][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:40.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.436][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.437][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:40.438][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:40.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.439][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.440][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:40.441][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:40.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.442][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.443][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:40.444][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:40.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.445][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.446][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:40.447][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:40.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.448][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.449][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:40.450][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:40.451][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:40.452][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:40.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.453][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.459][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:40.460][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:40.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.462][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.462][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:40.463][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:40.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.465][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.465][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:40.466][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:40.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.468][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.469][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:40.470][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:40.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.471][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.472][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:40.473][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:40.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.474][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.475][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:40.475][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:40.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.477][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.478][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:40.478][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:40.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.480][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.480][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:40.481][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:40.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.482][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.483][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:40.484][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:40.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.485][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.486][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:40.487][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:40.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.488][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.489][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:40.490][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:40.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.491][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.492][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-03-15 16:05:40.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:40.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:40.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.496][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:40.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:40.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:40.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:40.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.502][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:40.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:40.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.505][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:40.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:40.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.508][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:40.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:40.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.511][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:40.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:40.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.514][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:40.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:40.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.517][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:40.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:40.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.520][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:40.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:40.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.523][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:40.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:40.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.526][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:40.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:40.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.529][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:40.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:40.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.532][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:40.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:40.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.535][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:40.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:40.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.538][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:40.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:40.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.541][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:40.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:40.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.544][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:40.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:40.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.547][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:40.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:40.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.550][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:40.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:40.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.553][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:40.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:40.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.557][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:40.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:40.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.559][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:40.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:40.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.563][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:40.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:40.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.566][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:40.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:40.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.568][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:40.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:40.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.571][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:40.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:40.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.574][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:40.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:40.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.577][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:40.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:40.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.580][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:40.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:40.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.583][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:40.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:40.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.587][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:40.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:40.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.590][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:40.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:40.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.593][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:40.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:40.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.596][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:40.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:40.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.599][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:40.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:40.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.606][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4648, 0, 4648, C30H50, InChI=1S/C30H50/c1-20(2)21-12-17-27(5)22(21)13-18-29(7)24(27)10-11-25-28(6)16-9-15-26(3,4)23(28)14-19-30(25,29)8/h21-25H,1,9-19H2,2-8H3/t21-,22+,23+,24-,25-,27+,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2025-03-15 16:05:40.607][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:40.608][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:40.609][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:40.614][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:40.615][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:40.615][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:40.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:40.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:40.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:40.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.620][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:40.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:40.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.623][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:40.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:40.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.626][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:40.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:40.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.629][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:40.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:40.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.632][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:40.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:40.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.635][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:40.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:40.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.638][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:40.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:40.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.642][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:40.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:40.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.645][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:40.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:40.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.648][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:40.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:40.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.651][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:40.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:40.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.654][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:40.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:40.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.657][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:40.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:40.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.660][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:40.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:40.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.663][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:40.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:40.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.666][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:40.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:40.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.669][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:40.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:40.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.672][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:40.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:40.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.675][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:40.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:40.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.679][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:40.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:40.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.682][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:40.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:40.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.684][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:40.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:40.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.687][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:40.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:40.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.690][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:40.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:40.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.693][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:40.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:40.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.696][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:40.697][private$selectFields]
biodb.TRACE[2025-03-15 16:05:40.698][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:40.699][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:40.700][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:40.701][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:40.701][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:40.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.703][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.703][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:40.704][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:40.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.706][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.706][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:40.707][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:40.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.709][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.709][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:40.710][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:40.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.711][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.717][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:40.718][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:40.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.720][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.721][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:40.736][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:40.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.737][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.738][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:40.739][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:40.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.740][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.741][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:40.742][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:40.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.743][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.744][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:40.745][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:40.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.746][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.747][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:40.747][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:40.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.749][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.749][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:40.751][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:40.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.755][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.756][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:40.757][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:40.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.759][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.759][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:40.760][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:40.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.761][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.762][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:40.763][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:40.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.764][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.765][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:40.766][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:40.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.767][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.768][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:40.769][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:40.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.770][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.771][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:40.772][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:40.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.773][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.774][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:40.775][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:40.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.776][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.777][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:40.778][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:40.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.779][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.780][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:40.780][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:40.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.782][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.782][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:40.783][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:40.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.784][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.785][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:40.786][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:40.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.787][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.788][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:40.789][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:40.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.790][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.791][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:40.792][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:40.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.793][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.794][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:40.795][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:40.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.796][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.797][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:40.797][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:40.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.799][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.800][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:40.800][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:40.801][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:40.802][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:40.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.803][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.804][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:40.804][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:40.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.806][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.806][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:40.807][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:40.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.808][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.809][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:40.810][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:40.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.811][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.812][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:40.813][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:40.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.815][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.815][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:40.816][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:40.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.818][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.818][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:40.819][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:40.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.820][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.821][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:40.822][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:40.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.823][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.824][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:40.825][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:40.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.826][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.827][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:40.828][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:40.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.829][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.830][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:40.831][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:40.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.832][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.833][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:40.834][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:40.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.835][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.836][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-03-15 16:05:40.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:40.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:40.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:40.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:40.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.843][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:40.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:40.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.846][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:40.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:40.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.849][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:40.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:40.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.852][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:40.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:40.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.855][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:40.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:40.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.858][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:40.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:40.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.861][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:40.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:40.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.864][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:40.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:40.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.867][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:40.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:40.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.870][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:40.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:40.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.873][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:40.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:40.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.876][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:40.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:40.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.879][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:40.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:40.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.882][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:40.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:40.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.885][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:40.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:40.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.888][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:40.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:40.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.891][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:40.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:40.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.894][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:40.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:40.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.898][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:40.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:40.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.901][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:40.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:40.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.904][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:40.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:40.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.907][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:40.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:40.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.910][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:40.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:40.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.913][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:40.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:40.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.916][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:40.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:40.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.919][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:40.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:40.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.922][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:40.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:40.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.925][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:40.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:40.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.929][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:40.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:40.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.932][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:40.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:40.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.935][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:40.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:40.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.938][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:40.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:40.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.941][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:40.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:40.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.943][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:40.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:40.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.951][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2025-03-15 16:05:40.952][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:40.953][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:40.954][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:40.958][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:40.959][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:40.960][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:40.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:40.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:40.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:40.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:40.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:40.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.967][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:40.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:40.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.971][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:40.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:40.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.974][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:40.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:40.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.977][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:40.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:40.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.980][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:40.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:40.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.982][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:40.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:40.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.991][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:40.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:40.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.994][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:40.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:40.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:40.997][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:40.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:40.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:40.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.000][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:41.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:41.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.003][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:41.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:41.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.006][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:41.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:41.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.009][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:41.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:41.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.012][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:41.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:41.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.015][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:41.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:41.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.017][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:41.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:41.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.020][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:41.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:41.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.023][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:41.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:41.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.027][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:41.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:41.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.029][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:41.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:41.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.032][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:41.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:41.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.035][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:41.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:41.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.038][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:41.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:41.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.041][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:41.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:41.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.044][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:41.045][private$selectFields]
biodb.TRACE[2025-03-15 16:05:41.046][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:41.046][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:41.047][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:41.048][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:41.048][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:41.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.050][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.051][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:41.052][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:41.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.053][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.054][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:41.054][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:41.055][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.056][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.056][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:41.057][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:41.058][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.059][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.060][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:41.061][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:41.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.062][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.063][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:41.064][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:41.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.065][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.066][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:41.067][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:41.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.068][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.069][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:41.069][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:41.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.071][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.071][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:41.072][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:41.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.074][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.075][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:41.075][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:41.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.077][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.078][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:41.078][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:41.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.080][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.080][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:41.081][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:41.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.083][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.083][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:41.084][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:41.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.086][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.086][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:41.087][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:41.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.088][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.089][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:41.090][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:41.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.091][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.092][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:41.093][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:41.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.094][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.095][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:41.095][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:41.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.097][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.098][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:41.099][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:41.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.100][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.101][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:41.101][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:41.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.103][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.103][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:41.104][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:41.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.106][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.106][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:41.107][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:41.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.108][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.109][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:41.110][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:41.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.112][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.113][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:41.114][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:41.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.115][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.116][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:41.117][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:41.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.118][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.119][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:41.120][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:41.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.121][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.122][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:41.123][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:41.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.124][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.125][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-03-15 16:05:41.126][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-03-15 16:05:41.126][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:41.127][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:41.128][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.128][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.129][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:41.130][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:41.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.131][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.132][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:41.133][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:41.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.135][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.135][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:41.136][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:41.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.137][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.138][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:41.139][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:41.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.141][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.141][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:41.142][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:41.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.144][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.144][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:41.145][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:41.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.146][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.147][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:41.148][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:41.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.149][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.150][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:41.151][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:41.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.152][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.153][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:41.154][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:41.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.155][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.156][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:41.157][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:41.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.158][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.159][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-03-15 16:05:41.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:41.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:41.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:41.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:41.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:41.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:41.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.170][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:41.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:41.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.173][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:41.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:41.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.176][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:41.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:41.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.179][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:41.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:41.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.182][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:41.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:41.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.185][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:41.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:41.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.188][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:41.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:41.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.191][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:41.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:41.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.194][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:41.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:41.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.197][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:41.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:41.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.200][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:41.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:41.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.203][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:41.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:41.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.207][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:41.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:41.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.209][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:41.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:41.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.212][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:41.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:41.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.215][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:41.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:41.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.218][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:41.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:41.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.221][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:41.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:41.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.225][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:41.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:41.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.228][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:41.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:41.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.231][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:41.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:41.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.234][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:41.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:41.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.237][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:41.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:41.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.240][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:41.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:41.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.249][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:41.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:41.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.252][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:41.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:41.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.255][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:41.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:41.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.258][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:41.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:41.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.261][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:41.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:41.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.264][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:41.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:41.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.271][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [62447, 0, 62447, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-29(7)24(23)13-14-26-28(6)18-10-17-27(4,5)25(28)16-20-30(26,29)8/h11,23-26H,3,9-10,12-20H2,1-2,4-8H3/t23-,24-,25+,26-,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2025-03-15 16:05:41.272][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:05:41.272][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:05:41.275][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:41.276][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:41.276][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:41.281][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:41.282][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:41.282][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:41.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:41.286][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:05:41.288][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:05:41.289][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2025-03-15 16:05:41.290][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:05:41.291][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2025-03-15 16:05:41.293][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:41.294][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:41.295][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:41.299][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:41.300][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:41.301][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:41.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:41.302][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:41.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:41.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.305][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:41.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:41.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:41.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:41.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:41.312][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:41.313][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:41.313][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:41.318][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:41.319][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:41.319][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:41.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:41.321][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:41.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:41.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.324][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:41.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:41.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.327][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:41.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:41.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:41.330][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:41.331][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:41.331][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:41.336][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:41.337][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:41.338][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:41.339][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:41.340][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:41.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:41.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.343][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:41.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:41.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.346][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:41.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:41.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:41.349][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:05:41.350][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:41.351][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:41.351][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:41.356][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:41.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:41.358][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:41.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:41.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:41.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:41.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:41.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:41.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.366][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:41.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:41.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.368][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:41.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:41.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.372][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:41.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:41.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.374][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:41.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:41.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.378][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:41.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:41.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.381][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:41.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:41.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.384][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:41.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:41.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.387][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:41.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:41.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.390][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:41.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:41.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.393][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:41.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:41.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.396][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:41.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:41.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.399][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:41.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:41.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.402][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:41.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:41.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.405][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:41.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:41.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.408][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:41.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:41.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.411][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:41.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:41.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.414][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:41.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:41.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.418][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:41.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:41.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.421][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:41.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:41.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.424][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:41.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:41.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.426][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:41.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:41.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.429][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:41.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:41.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.433][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:41.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:41.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.436][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:41.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:41.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.439][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:41.439][private$selectFields]
biodb.TRACE[2025-03-15 16:05:41.440][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:41.441][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:41.442][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:41.443][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:41.443][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:41.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.445][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.445][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:41.446][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:41.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.448][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.449][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:41.450][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:41.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.451][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.452][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:41.453][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:41.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.454][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.455][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:41.456][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:41.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.458][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.458][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:41.459][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:41.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.461][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.461][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:41.462][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:41.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.463][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.464][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:41.465][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:41.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.466][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.467][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:41.468][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:41.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.469][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.470][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:41.471][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:41.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.472][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.473][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:41.474][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:41.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.476][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.476][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:41.477][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:41.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.479][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.479][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:41.480][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:41.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.481][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.482][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:41.483][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:41.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.485][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.485][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:41.486][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:41.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.488][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.488][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:41.489][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:41.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.490][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.491][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:41.492][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:41.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.493][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.494][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:41.495][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:41.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.496][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.497][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:41.498][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:41.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.500][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.500][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:41.501][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:41.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.503][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.503][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:41.504][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:41.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.505][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.507][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:41.508][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:41.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.514][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.515][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:41.516][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:41.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.518][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.518][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:41.519][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:41.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.520][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.521][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:41.522][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:41.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.523][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.524][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:41.525][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:41.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.526][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.527][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:41.528][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:41.529][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:41.529][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:41.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.531][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.531][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:41.532][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:41.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.534][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.534][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:41.535][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:41.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.536][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.537][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:41.538][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:41.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.539][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.540][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:41.541][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:41.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.542][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.543][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:41.543][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:41.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.545][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.545][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:41.546][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:41.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.548][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.549][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:41.550][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:41.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.551][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.552][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:41.553][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:41.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.554][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.555][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:41.556][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:41.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.557][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.558][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:41.559][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:41.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.560][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.561][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:41.561][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:41.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.563][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.564][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-03-15 16:05:41.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:41.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:41.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:41.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:41.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.570][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:41.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:41.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.574][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:41.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:41.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.577][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:41.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:41.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.580][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:41.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:41.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.583][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:41.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:41.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.586][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:41.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:41.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.589][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:41.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:41.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.592][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:41.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:41.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.595][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:41.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:41.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.598][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:41.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:41.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.602][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:41.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:41.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.605][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:41.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:41.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.608][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:41.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:41.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.611][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:41.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:41.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.615][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:41.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:41.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.618][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:41.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:41.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.621][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:41.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:41.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.623][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:41.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:41.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.627][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:41.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:41.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.630][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:41.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:41.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.633][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:41.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:41.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.636][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:41.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:41.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.639][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:41.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:41.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.642][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:41.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:41.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.646][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:41.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:41.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.649][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:41.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:41.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.652][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:41.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:41.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.655][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:41.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:41.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.658][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:41.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:41.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.661][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:41.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:41.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.664][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:41.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:41.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.667][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:41.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:41.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.670][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:41.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:41.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.673][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:41.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:41.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.681][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2025-03-15 16:05:41.682][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:41.683][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:41.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:41.689][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:41.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:41.691][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:41.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:41.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:41.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:41.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:41.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:41.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.699][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:41.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:41.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.702][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:41.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:41.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.705][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:41.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:41.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.708][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:41.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:41.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.711][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:41.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:41.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.714][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:41.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:41.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.717][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:41.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:41.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.720][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:41.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:41.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.723][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:41.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:41.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.726][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:41.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:41.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.729][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:41.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:41.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.732][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:41.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:41.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.735][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:41.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:41.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.738][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:41.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:41.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.741][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:41.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:41.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.745][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:41.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:41.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.748][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:41.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:41.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.751][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:41.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:41.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.753][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:41.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:41.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.756][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:41.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:41.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.759][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:41.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:41.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.763][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:41.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:41.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.766][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:41.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:41.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.769][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:41.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:41.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.777][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:41.778][private$selectFields]
biodb.TRACE[2025-03-15 16:05:41.779][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:41.779][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:41.780][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:41.781][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:41.782][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:41.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.783][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.784][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:41.785][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:41.786][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.787][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.787][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:41.788][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:41.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.790][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.790][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:41.791][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:41.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.793][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.793][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:41.794][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:41.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.795][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.796][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:41.797][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:41.797][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.798][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.799][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:41.800][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:41.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.801][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.802][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:41.803][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:41.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.804][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.805][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:41.806][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:41.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.807][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.808][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:41.809][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:41.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.810][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.811][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:41.812][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:41.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.813][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.814][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:41.815][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:41.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.816][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.817][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:41.817][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:41.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.819][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.820][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:41.820][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:41.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.822][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.823][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:41.824][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:41.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.825][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.841][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:41.842][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:41.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.843][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.844][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:41.845][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:41.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.846][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.847][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:41.848][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:41.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.849][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.850][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:41.851][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:41.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.852][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.853][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:41.854][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:41.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.858][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.860][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:41.861][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:41.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.863][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.863][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:41.864][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:41.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.865][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.866][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:41.867][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:41.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.868][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.869][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:41.870][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:41.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.871][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.872][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:41.873][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:41.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.874][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.875][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:41.876][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:41.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.877][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.878][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-03-15 16:05:41.879][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-03-15 16:05:41.879][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:41.880][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:41.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.881][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.882][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:41.883][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:41.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.884][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.885][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:41.886][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:41.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.887][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.888][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:41.889][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:41.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.891][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.891][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:41.892][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:41.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.893][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.894][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:41.895][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:41.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.896][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.897][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:41.898][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:41.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.899][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.900][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:41.901][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:41.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.902][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.903][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:41.904][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:41.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.905][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.906][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:41.907][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:41.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.908][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.909][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:41.910][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:41.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.911][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.912][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-03-15 16:05:41.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:41.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:41.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.916][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:41.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:41.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:41.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:41.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.923][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:41.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:41.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.926][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:41.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:41.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.929][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:41.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:41.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.933][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:41.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:41.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.936][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:41.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:41.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.939][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:41.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:41.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.942][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:41.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:41.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.945][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:41.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:41.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.949][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:41.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:41.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.952][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:41.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:41.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.955][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:41.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:41.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.959][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:41.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:41.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.962][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:41.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:41.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.965][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:41.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:41.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.968][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:41.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:41.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.972][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:41.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:41.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.975][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:41.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:41.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.978][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:41.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:41.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.981][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:41.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:41.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.985][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:41.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:41.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.987][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:41.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:41.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.991][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:41.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:41.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.993][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:41.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:41.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:41.996][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:41.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:41.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:41.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.000][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:42.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:42.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.003][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:42.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:42.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.006][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:42.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:42.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.009][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:42.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:42.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.012][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:42.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:42.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.015][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:42.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:42.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.023][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [91601, 0, 91601, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24?,25?/m0/s1, ...].
biodb.DEBUG[2025-03-15 16:05:42.024][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:42.024][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:42.025][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:42.030][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:42.030][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:42.031][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:42.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:42.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:42.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:42.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:42.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:42.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.040][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:42.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:42.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.043][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:42.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:42.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.047][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:42.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:42.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.050][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:42.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:42.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.058][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:42.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:42.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.062][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:42.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:42.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.065][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:42.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:42.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.068][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:42.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:42.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.071][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:42.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:42.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.074][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:42.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:42.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.077][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:42.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:42.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.080][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:42.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:42.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.084][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:42.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:42.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.086][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:42.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:42.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.090][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:42.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:42.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.093][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:42.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:42.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.096][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:42.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:42.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.099][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:42.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:42.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.102][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:42.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:42.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.105][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:42.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:42.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.108][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:42.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:42.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.111][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:42.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:42.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.114][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:42.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:42.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.117][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:42.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:42.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.120][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:42.120][private$selectFields]
biodb.TRACE[2025-03-15 16:05:42.121][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:42.122][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:42.122][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:42.123][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:42.124][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:42.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.126][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.126][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:42.127][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:42.128][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.129][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.129][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:42.130][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:42.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.132][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.132][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:42.133][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:42.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.135][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.135][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:42.136][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:42.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.138][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.139][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:42.140][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:42.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.141][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.142][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:42.143][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:42.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.145][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.146][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:42.146][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:42.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.148][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.149][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:42.150][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:42.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.151][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.152][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:42.153][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:42.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.155][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.155][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:42.156][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:42.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.158][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.158][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:42.159][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:42.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.161][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.161][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:42.162][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:42.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.164][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.164][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:42.165][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:42.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.167][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.167][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:42.168][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:42.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.169][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.170][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:42.171][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:42.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.173][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.173][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:42.174][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:42.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.175][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.176][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:42.177][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:42.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.178][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.179][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:42.180][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:42.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.182][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.182][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:42.183][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:42.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.185][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.185][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:42.186][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:42.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.188][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.189][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:42.190][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:42.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.191][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.192][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:42.193][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:42.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.194][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.195][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:42.196][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:42.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.197][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.198][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:42.199][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:42.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.201][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.201][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:42.202][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:42.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.204][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.205][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-03-15 16:05:42.205][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-03-15 16:05:42.206][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:42.207][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:42.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.209][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.209][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:42.210][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:42.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.212][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.212][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:42.213][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:42.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.215][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.216][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:42.217][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:42.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.218][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.219][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:42.220][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:42.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.221][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.222][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:42.223][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:42.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.224][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.225][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:42.226][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:42.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.228][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.229][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:42.229][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:42.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.231][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.232][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:42.232][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:42.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.234][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.235][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:42.236][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:42.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.237][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.238][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:42.239][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:42.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.240][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.241][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-03-15 16:05:42.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:42.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:42.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:42.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:42.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:42.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:42.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.252][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:42.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:42.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.255][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:42.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:42.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.258][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:42.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:42.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.262][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:42.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:42.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.265][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:42.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:42.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:42.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:42.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.271][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:42.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:42.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.274][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:42.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:42.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.278][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:42.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:42.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.281][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:42.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:42.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.284][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:42.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:42.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.287][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:42.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:42.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.290][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:42.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:42.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.294][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:42.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:42.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.297][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:42.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:42.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.300][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:42.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:42.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.303][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:42.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:42.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.306][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:42.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:42.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:42.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:42.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.312][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:42.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:42.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.315][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:42.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:42.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.343][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:42.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:42.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.347][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:42.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:42.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.351][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:42.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:42.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.354][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:42.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:42.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.357][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:42.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:42.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.361][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:42.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:42.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.364][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:42.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:42.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.367][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:42.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:42.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.371][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:42.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:42.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.379][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [95147, 0, 95147, C29H40N2O4, InChI=1S/C29H40N2O4/c1-3-18-16(2)14-22-20(18)10-11-21-19-6-4-8-26(33)30-13-5-7-24-28(34)27(29(35)31-24)25(32)12-9-17(19)15-23(21)22/h4,8,10-11,16-24,27H,3,5-7,9,12-15H2,1-2H3,(H,30,33)(H,31,35)/t16-,17-,18-,19+,20+,21-,22+,23+,24+,27?/m1/s1, ...].
biodb.DEBUG[2025-03-15 16:05:42.380][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:05:42.381][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-03-15 16:05:42.383][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:42.384][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:42.385][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:42.390][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:42.391][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:42.391][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:42.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-15 16:05:42.394][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-15 16:05:42.397][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-15 16:05:42.398][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2025-03-15 16:05:42.399][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-15 16:05:42.401][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2025-03-15 16:05:42.403][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:42.404][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:42.404][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:42.409][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:42.410][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:42.411][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:42.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:42.413][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:42.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:42.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.416][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:42.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:42.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.419][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:42.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:42.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:42.422][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:42.423][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:42.424][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:42.429][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:42.430][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:42.431][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:42.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:42.433][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:42.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:42.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.436][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:42.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:42.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.439][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:42.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:42.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:42.442][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:42.443][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:42.443][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:42.448][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:42.449][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:42.450][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:42.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:42.451][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:42.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:42.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.454][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:42.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:42.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.457][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:42.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:42.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-15 16:05:42.461][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-15 16:05:42.462][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:42.463][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:42.464][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:42.468][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:42.469][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:42.470][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:42.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:42.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:42.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:42.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:42.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:42.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.478][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:42.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:42.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.481][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:42.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:42.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.484][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:42.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:42.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.486][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:42.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:42.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.490][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:42.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:42.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.493][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:42.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:42.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.496][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:42.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:42.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.500][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:42.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:42.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.503][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:42.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:42.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.507][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:42.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:42.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.510][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:42.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:42.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.513][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:42.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:42.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.516][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:42.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:42.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.519][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:42.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:42.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.522][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:42.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:42.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.525][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:42.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:42.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.528][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:42.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:42.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.532][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:42.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:42.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.535][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:42.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:42.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.539][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:42.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:42.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.542][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:42.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:42.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.546][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:42.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:42.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.548][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:42.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:42.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.551][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:42.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:42.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.555][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:42.556][private$selectFields]
biodb.TRACE[2025-03-15 16:05:42.557][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:42.557][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:42.558][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:42.559][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:42.560][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:42.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.562][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.563][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:42.563][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:42.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.565][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.565][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:42.566][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:42.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.567][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.568][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:42.569][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:42.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.571][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.571][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:42.572][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:42.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.574][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.574][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:42.575][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:42.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.577][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.577][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:42.578][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:42.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.580][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.580][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:42.581][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:42.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.583][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.583][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:42.584][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:42.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.586][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.586][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:42.587][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:42.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.589][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.590][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:42.591][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:42.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.592][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.593][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:42.594][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:42.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.596][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.597][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:42.597][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:42.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.599][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.600][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:42.601][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:42.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.602][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.603][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:42.604][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:42.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.606][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.606][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:42.607][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:42.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.609][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.610][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:42.610][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:42.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.612][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.613][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:42.614][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:42.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.615][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.616][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:42.617][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:42.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.618][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.619][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:42.620][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:42.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.627][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.628][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:42.629][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:42.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.631][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.631][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:42.632][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:42.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.634][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.634][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:42.635][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:42.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.636][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.637][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:42.638][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:42.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.639][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.640][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:42.641][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:42.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.642][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.643][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:42.644][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:42.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.645][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.646][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:42.647][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:42.648][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:42.649][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:42.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.650][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.651][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:42.652][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:42.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.653][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.654][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:42.655][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:42.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.656][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.657][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:42.658][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:42.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.659][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.660][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:42.661][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:42.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.662][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.663][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:42.664][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:42.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.665][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.666][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:42.667][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:42.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.668][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.668][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:42.669][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:42.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.671][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.672][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:42.672][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:42.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.674][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.675][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:42.675][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:42.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.677][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.677][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:42.678][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:42.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.679][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.680][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:42.681][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:42.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.682][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.683][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-03-15 16:05:42.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:42.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:42.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:42.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:42.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.690][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:42.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:42.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.693][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:42.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:42.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.696][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:42.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:42.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.699][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:42.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:42.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.702][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:42.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:42.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.705][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:42.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:42.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.708][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:42.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:42.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.712][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:42.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:42.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.715][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:42.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:42.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.718][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:42.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:42.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.721][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:42.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:42.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.724][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:42.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:42.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.727][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:42.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:42.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.731][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:42.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:42.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.734][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:42.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:42.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.737][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:42.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:42.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.740][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:42.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:42.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.743][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:42.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:42.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.746][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:42.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:42.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.749][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:42.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:42.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.753][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:42.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:42.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.756][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:42.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:42.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.759][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:42.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:42.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.762][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:42.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:42.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.765][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:42.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:42.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.768][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:42.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:42.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.771][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:42.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:42.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.774][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:42.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:42.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.777][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:42.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:42.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.780][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:42.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:42.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.784][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:42.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:42.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.787][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:42.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:42.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.791][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:42.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:42.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.794][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:42.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:42.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.801][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [636, 0, 636, C24H26O6, InChI=1S/C24H26O6/c1-12(2)6-7-14-19-17(11-16(26)22(14)28-5)29-18-10-15(25)13-8-9-24(3,4)30-23(13)20(18)21(19)27/h6,10-11,25-26H,7-9H2,1-5H3, ...].
biodb.DEBUG[2025-03-15 16:05:42.802][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:42.803][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:42.804][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:42.809][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:42.809][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:42.810][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:42.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:42.812][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:42.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:42.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:42.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:42.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.818][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:42.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:42.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.821][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:42.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:42.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.824][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:42.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:42.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.827][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:42.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:42.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.830][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:42.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:42.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.833][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:42.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:42.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.837][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:42.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:42.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.840][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:42.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:42.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.843][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:42.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:42.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.846][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:42.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:42.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.849][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:42.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:42.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.853][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:42.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:42.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.856][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:42.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:42.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.859][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:42.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:42.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.863][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:42.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:42.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.866][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:42.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:42.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.870][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:42.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:42.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.873][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:42.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:42.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.876][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:42.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:42.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.879][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:42.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:42.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.882][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:42.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:42.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.886][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:42.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:42.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.894][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:42.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:42.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.897][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:42.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:42.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.900][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:42.901][private$selectFields]
biodb.TRACE[2025-03-15 16:05:42.901][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:42.902][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:42.903][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:42.904][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:42.905][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:42.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.906][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.907][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:42.908][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:42.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.909][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.910][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:42.910][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:42.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.912][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.913][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:42.913][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:42.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.915][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.916][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:42.917][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:42.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.918][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.919][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:42.920][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:42.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.921][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.922][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:42.923][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:42.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.924][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.925][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:42.926][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:42.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.927][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.928][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:42.929][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:42.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.930][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.931][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:42.932][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:42.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.933][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.934][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:42.935][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:42.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.936][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.937][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:42.938][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:42.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.939][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.940][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:42.941][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:42.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.942][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.943][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:42.944][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:42.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.945][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.946][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:42.947][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:42.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.948][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.949][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:42.950][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:42.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.951][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.952][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:42.953][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:42.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.955][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.955][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:42.956][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:42.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.958][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.959][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:42.959][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:42.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.961][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.962][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:42.963][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:42.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.964][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.965][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:42.966][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:42.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.967][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.968][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:42.969][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:42.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.970][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.971][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:42.972][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:42.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.974][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.974][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:42.975][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:42.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.977][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.977][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:42.978][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:42.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.980][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.981][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:42.981][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:42.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.983][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.984][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-03-15 16:05:42.984][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-03-15 16:05:42.985][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:42.986][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:42.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.987][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.988][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:42.989][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:42.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.990][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.991][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:42.992][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:42.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.993][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.994][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:42.994][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:42.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.996][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:42.997][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:42.998][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:42.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:42.999][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.000][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:43.000][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:43.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.002][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.002][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:43.003][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:43.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.005][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.006][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:43.006][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:43.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.008][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.009][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:43.010][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:43.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.011][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.028][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:43.029][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:43.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.031][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.032][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:43.033][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:43.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.034][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.035][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-03-15 16:05:43.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:43.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:43.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:43.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:43.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.042][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:43.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:43.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.045][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:43.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:43.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.048][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:43.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:43.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.051][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:43.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:43.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.055][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:43.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:43.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.063][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:43.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:43.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.066][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:43.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:43.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.069][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:43.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:43.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.072][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:43.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:43.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.076][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:43.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:43.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.079][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:43.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:43.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.082][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:43.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:43.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.085][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:43.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:43.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.089][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:43.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:43.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.092][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:43.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:43.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.095][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:43.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:43.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.098][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:43.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:43.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.101][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:43.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:43.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.104][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:43.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:43.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.107][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:43.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:43.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.110][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:43.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:43.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.113][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:43.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:43.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.117][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:43.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:43.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.120][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:43.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:43.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.123][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:43.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:43.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.126][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:43.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:43.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.129][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:43.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:43.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.132][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:43.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:43.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.136][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:43.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:43.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.139][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:43.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:43.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.142][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:43.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:43.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.150][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [64199, 0, 64199, C24H27ClN2O2, InChI=1S/C24H26N2O2.ClH/c27-24(28)20-9-10-23-22(16-20)21(17-25-23)8-4-5-13-26-14-11-19(12-15-26)18-6-2-1-3-7-18;/h1-3,6-7,9-11,16-17,25H,4-5,8,12-15H2,(H,27,28);1H, ...].
biodb.DEBUG[2025-03-15 16:05:43.151][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-15 16:05:43.151][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:43.152][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:43.157][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:43.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:43.158][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:43.159][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-15 16:05:43.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:43.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:43.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:43.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:43.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.166][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:43.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:43.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.170][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:43.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:43.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.173][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:43.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:43.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:43.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:43.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.185][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:43.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:43.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.188][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:43.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:43.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.191][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:43.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:43.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.195][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:43.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:43.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.198][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:43.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:43.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.201][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:43.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:43.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.204][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:43.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:43.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.208][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:43.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:43.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.211][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:43.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:43.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.214][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:43.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:43.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.217][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:43.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:43.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.220][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:43.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:43.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.223][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:43.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:43.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.226][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:43.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:43.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.229][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:43.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:43.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.233][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:43.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:43.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.236][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:43.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:43.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.239][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:43.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:43.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.242][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:43.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:43.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.245][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:43.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:43.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.248][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:43.249][private$selectFields]
biodb.TRACE[2025-03-15 16:05:43.250][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-15 16:05:43.251][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-15 16:05:43.251][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-03-15 16:05:43.252][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:43.253][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:43.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.255][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.256][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:43.256][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:43.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.258][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.259][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:43.260][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:43.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.261][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.262][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:43.263][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:43.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.264][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.265][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:43.266][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:43.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.267][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.268][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:43.269][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:43.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.271][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.271][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:43.272][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:43.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.274][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.275][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:43.275][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:43.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.277][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.277][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:43.278][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:43.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.280][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.281][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:43.281][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:43.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.283][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.284][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:43.284][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:43.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.286][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.286][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:43.287][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:43.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.289][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.289][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:43.290][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:43.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.292][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.292][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:43.293][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:43.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.295][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.295][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:43.296][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:43.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.298][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.298][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:43.299][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:43.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.301][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.302][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:43.303][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:43.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.304][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.305][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:43.306][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:43.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.308][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.308][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:43.309][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:43.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.311][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.312][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:43.312][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-15 16:05:43.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.314][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.315][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:43.315][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:43.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.317][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.318][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:43.318][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:43.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.320][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.321][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:43.322][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:43.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.323][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.324][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:43.325][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:43.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.326][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.327][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:43.328][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:43.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.329][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.330][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-03-15 16:05:43.331][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-03-15 16:05:43.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.333][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.334][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-03-15 16:05:43.335][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-03-15 16:05:43.335][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:43.336][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:43.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.338][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.338][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:43.339][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:43.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.341][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.341][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:43.342][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:43.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.344][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.345][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:43.346][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:43.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.347][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.348][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:43.349][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:43.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.350][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.351][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:43.352][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:43.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.353][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.354][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:43.355][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:43.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.356][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.357][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:43.358][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:43.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.360][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.360][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:43.361][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:43.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.363][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.363][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:43.364][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:43.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.366][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.366][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:43.367][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:43.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.369][ef$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.370][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-03-15 16:05:43.371][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:43.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:43.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:43.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:43.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-15 16:05:43.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-15 16:05:43.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.381][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:43.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:43.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.384][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:43.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:43.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.387][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-15 16:05:43.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-15 16:05:43.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.391][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:43.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:43.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.394][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:43.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:43.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.397][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-15 16:05:43.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-15 16:05:43.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.400][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:43.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:43.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.403][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:43.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:43.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.407][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-15 16:05:43.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-15 16:05:43.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.410][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:43.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:43.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.413][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:43.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:43.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.417][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-15 16:05:43.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-15 16:05:43.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.420][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:43.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:43.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.423][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:43.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:43.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.426][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-15 16:05:43.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-15 16:05:43.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.430][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:43.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:43.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.433][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:43.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:43.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.436][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:43.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-15 16:05:43.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.439][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:43.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:43.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.443][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:43.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:43.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.451][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:43.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-15 16:05:43.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.455][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:43.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:43.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.458][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:43.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:43.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.461][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-15 16:05:43.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-15 16:05:43.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.464][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:43.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:43.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.467][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:43.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:43.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.470][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-15 16:05:43.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-15 16:05:43.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.473][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:43.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:43.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.476][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:43.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:43.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.479][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-15 16:05:43.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-15 16:05:43.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.487][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [65648, 0, 65648, C24H26O6, InChI=1S/C24H26O6/c1-13(2)9-10-23-20(27)22(28-5)11-14-19(26)18-15(25)7-6-8-16(18)29-24(14,23)17(12-22)21(3,4)30-23/h6-9,11,17,25H,10,12H2,1-5H3/t17-,22-,23-,24+/m0/s1, ...].
biodb.DEBUG[2025-03-15 16:05:43.487][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-15 16:05:43.488][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-03-15 16:05:43.493][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-03-15 16:05:43.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-03-15 16:05:43.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.496][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-03-15 16:05:43.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-03-15 16:05:43.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-15 16:05:43.500][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-03-15 16:05:43.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-03-15 16:05:43.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-15 16:05:43.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-15 16:05:43.506][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-03-15 16:05:43.507][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2025-03-15 16:05:43.508][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2025-03-15 16:05:43.509][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-03-15 16:05:43.509][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-15 16:05:43.510][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-15 16:05:43.511][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-15 16:05:43.511][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-15 16:05:43.512][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-03-15 16:05:43.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1392 ]
>
> proc.time()
user system elapsed
58.416 3.125 240.632
##############################################################################
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###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.13.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbChebi.Rcheck’
* using R Under development (unstable) (2025-03-02 r87868)
* using platform: x86_64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 14.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘biodbChebi/DESCRIPTION’ ... OK
* this is package ‘biodbChebi’ version ‘1.13.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbChebi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in ‘longtests’ ... OK
* checking tests in ‘longtests’ ...
Running ‘testthat.R’
OK
* DONE
Status: OK
biodbChebi.Rcheck/00install.out
* installing *source* package ‘biodbChebi’ ... ** this is package ‘biodbChebi’ version ‘1.13.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (biodbChebi)