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This page was generated on 2025-03-14 11:42 -0400 (Fri, 14 Mar 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" 4781
palomino7Windows Server 2022 Datacenterx64R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences" 4537
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" 4567
kjohnson3macOS 13.7.1 Venturaarm64R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" 4519
kunpeng2Linux (openEuler 24.03 LTS)aarch64R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" 4451
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2068/2309HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
squallms 1.1.0  (landing page)
William Kumler
Snapshot Date: 2025-03-13 13:40 -0400 (Thu, 13 Mar 2025)
git_url: https://git.bioconductor.org/packages/squallms
git_branch: devel
git_last_commit: c717511
git_last_commit_date: 2024-10-29 11:31:58 -0400 (Tue, 29 Oct 2024)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped
palomino7Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson3macOS 13.7.1 Ventura / arm64  OK    ERROR  skippedskipped
kunpeng2Linux (openEuler 24.03 LTS) / aarch64  OK    ERROR  skipped

BUILD results for squallms on palomino7

To the developers/maintainers of the squallms package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/squallms.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: squallms
Version: 1.1.0
Command: chmod a+r squallms -R && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data squallms
StartedAt: 2025-03-13 21:47:58 -0400 (Thu, 13 Mar 2025)
EndedAt: 2025-03-13 21:49:31 -0400 (Thu, 13 Mar 2025)
EllapsedTime: 93.6 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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###
### Running command:
###
###   chmod a+r squallms -R && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data squallms
###
##############################################################################
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* checking for file 'squallms/DESCRIPTION' ... OK
* preparing 'squallms':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'intro_to_squallms.Rmd' using rmarkdown

Quitting from lines 54-90 [run_xcms] (intro_to_squallms.Rmd)
Error: processing vignette 'intro_to_squallms.Rmd' failed with diagnostics:
"NAnnotatedDataFrame" is not a defined class
--- failed re-building 'intro_to_squallms.Rmd'

SUMMARY: processing the following file failed:
  'intro_to_squallms.Rmd'

Error: Vignette re-building failed.
Execution halted