Back to Multiple platform build/check report for BioC 3.21: simplified long |
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This page was generated on 2025-03-14 11:47 -0400 (Fri, 14 Mar 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4781 |
palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences" | 4537 |
lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" | 4567 |
kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" | 4519 |
kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4451 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1815/2309 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
rsbml 2.65.0 (landing page) Michael Lawrence
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | WARNINGS | ![]() | ||||||||
palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | ![]() | ||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | ... NOT SUPPORTED ... | ||||||||||||
kjohnson3 | macOS 13.7.1 Ventura / arm64 | ... NOT SUPPORTED ... | ||||||||||||
kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | ERROR | ERROR | skipped | ||||||||||
To the developers/maintainers of the rsbml package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/rsbml.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
Package: rsbml |
Version: 2.65.0 |
Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data rsbml |
StartedAt: 2025-03-14 02:13:16 -0000 (Fri, 14 Mar 2025) |
EndedAt: 2025-03-14 02:13:19 -0000 (Fri, 14 Mar 2025) |
EllapsedTime: 3.0 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data rsbml ### ############################################################################## ############################################################################## * checking for file ‘rsbml/DESCRIPTION’ ... OK * preparing ‘rsbml’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes ----------------------------------- * installing *source* package ‘rsbml’ ... ** this is package ‘rsbml’ version ‘2.65.0’ ** using staged installation checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for LIBSBML... yes configure: === Begin local SOSLib build === checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking build system type... config/config.guess: unable to guess system type This script, last modified 2008-01-23, has failed to recognize the operating system you are using. It is advised that you download the most up to date version of the config scripts from http://git.savannah.gnu.org/gitweb/?p=config.git;a=blob_plain;f=config.guess;hb=HEAD and http://git.savannah.gnu.org/gitweb/?p=config.git;a=blob_plain;f=config.sub;hb=HEAD If the version you run (config/config.guess) is already up to date, please send the following data and any information you think might be pertinent to <config-patches@gnu.org> in order to provide the needed information to handle your system. config.guess timestamp = 2008-01-23 uname -m = aarch64 uname -r = 6.6.0-56.0.0.60.oe2403sp1.aarch64 uname -s = Linux uname -v = #1 SMP Fri Nov 22 20:18:51 CST 2024 /usr/bin/uname -p = aarch64 /bin/uname -X = hostinfo = /bin/universe = /usr/bin/arch -k = /bin/arch = aarch64 /usr/bin/oslevel = /usr/convex/getsysinfo = UNAME_MACHINE = aarch64 UNAME_RELEASE = 6.6.0-56.0.0.60.oe2403sp1.aarch64 UNAME_SYSTEM = Linux UNAME_VERSION = #1 SMP Fri Nov 22 20:18:51 CST 2024 configure: error: cannot guess build type; you must specify one configure: === End local SOSLib build === configure: creating ./config.status config.status: creating src/Makevars ** libs using C compiler: ‘aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0’ using C++ compiler: ‘aarch64-unknown-linux-gnu-g++ (GCC) 14.2.0’ /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I/home/biocbuild/libsbml-from-git/include -I/usr/include/libxml2 -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c StringMap.c -o StringMap.o StringMap.c:52:10: fatal error: sbml/common/common.h: No such file or directory 52 | #include <sbml/common/common.h> | ^~~~~~~~~~~~~~~~~~~~~~ compilation terminated. make: *** [/home/biocbuild/R/R/etc/Makeconf:201: StringMap.o] Error 1 ERROR: compilation failed for package ‘rsbml’ * removing ‘/home/biocbuild/tmp/RtmpbxoMxZ/Rinst899df31b0edf7/rsbml’ ----------------------------------- ERROR: package installation failed