Multiple platform build/check report for BioC 3.21 - BUILD results for lpsymphony on nebbiolo1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.1 LTS)	x86_64	R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences"	4781
palomino7	Windows Server 2022 Datacenter	x64	R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences"	4537
lconway	macOS 12.7.1 Monterey	x86_64	R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences"	4567
kjohnson3	macOS 13.7.1 Ventura	arm64	R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences"	4519
kunpeng2	Linux (openEuler 24.03 LTS)	aarch64	R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences"	4451
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for lpsymphony on nebbiolo1

To the developers/maintainers of the lpsymphony package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/lpsymphony.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: lpsymphony

Version: 1.35.0

Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data lpsymphony

StartedAt: 2025-03-13 17:45:20 -0400 (Thu, 13 Mar 2025)

EndedAt: 2025-03-13 17:45:22 -0400 (Thu, 13 Mar 2025)

EllapsedTime: 2.0 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data lpsymphony
###
##############################################################################
##############################################################################


* checking for file ‘lpsymphony/DESCRIPTION’ ... OK
* preparing ‘lpsymphony’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘lpsymphony’ ...
** this is package ‘lpsymphony’ version ‘1.35.0’
** using staged installation
Running on Linux
CXX is g++ -std=gnu++17
CXX is g++ -std=gnu++14
configure: error: unrecognized option: -std=gnu2x
Try `./configure --help' for more information.
** libs
using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
make[1]: Entering directory '/tmp/RtmpXcGznh/Rbuildb18e1536c91af/lpsymphony/src/SYMPHONY'
make[1]: *** No targets specified and no makefile found.  Stop.
make[1]: Leaving directory '/tmp/RtmpXcGznh/Rbuildb18e1536c91af/lpsymphony/src/SYMPHONY'
make: *** [Makevars:14: SYMPHONY.ts] Error 2
ERROR: compilation failed for package ‘lpsymphony’
* removing ‘/tmp/RtmpXcGznh/Rinstb18e1457a48c5/lpsymphony’
      -----------------------------------
ERROR: package installation failed