Back to Multiple platform build/check report for BioC 3.21: simplified long |
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This page was generated on 2025-03-17 11:41 -0400 (Mon, 17 Mar 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences" | 4545 |
lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" | 4576 |
kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" | 4528 |
kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4459 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1030/2313 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
immunoClust 1.39.3 (landing page) Till Soerensen
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ![]() | |||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | ![]() | ||||||||
kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
To the developers/maintainers of the immunoClust package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/immunoClust.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
Package: immunoClust |
Version: 1.39.3 |
Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust |
StartedAt: 2025-03-16 23:39:19 -0000 (Sun, 16 Mar 2025) |
EndedAt: 2025-03-16 23:43:40 -0000 (Sun, 16 Mar 2025) |
EllapsedTime: 261.2 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust ### ############################################################################## ############################################################################## * checking for file ‘immunoClust/DESCRIPTION’ ... OK * preparing ‘immunoClust’: * checking DESCRIPTION meta-information ... OK * cleaning src * running ‘cleanup’ * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘immunoClust.Rnw’ using Sweave Loading required package: flowCore filtered from above:318 filtered from below:0 cluster 1(N=151) has 2 sub-cluster at 2 (20), ICL=130<>26 split 1 into 2 clusters cluster 1(N=151) has 2 sub-cluster at 2 (20), ICL=0<>26 Model Refinement takes 0.017 mins(max 1: 0.017) Fit Model 1 of (6/10) K=1->2 N=302 EM 2 takes 0 mins, 10 iterations cluster 1(N=78) has 2 sub-cluster at 2 (6), ICL=108<>30 split 1 into 2 clusters cluster 2(N=225) has 2 sub-cluster at 2 (7), ICL=58<>30 split 2 into 2 clusters cluster 1(N=78) has 2 sub-cluster at 2 (6), ICL=0<>30 Model Refinement takes 0.05 mins(max 2: 0.033) Fit Model 2 of (6/10) K=2->4 N=605 EM 4 takes 0 mins, 10 iterations cluster 2(N=116) has 2 sub-cluster at 2 (6), ICL=59<>34 split 2 into 2 clusters cluster 1(N=54) has 2 sub-cluster at 2 (100), ICL=55<>34 split 1 into 2 clusters cluster 4(N=53) has 2 sub-cluster at 2 (6), ICL=37<>34 split 4 into 2 clusters cluster 3(N=391) has 7 sub-cluster at 8 (32), ICL=1.5<>34 cluster 1(N=54) has 2 sub-cluster at 2 (100), ICL=0<>34 Model Refinement takes 0.067 mins(max 3: 0.033) Fit Model 3 of (6/10) K=4->7 N=1210 EM 6 takes 0.017 mins, 8 iterations cluster 6(N=39) has 3 sub-cluster at 3 (10), ICL=28<>37 cluster 2(N=62) has 5 sub-cluster at 5 (39), ICL=25<>37 cluster 1(N=131) has 2 sub-cluster at 2 (12), ICL=21<>37 cluster 5(N=87) has 4 sub-cluster at 4 (19), ICL=18<>37 cluster 3(N=129) has 5 sub-cluster at 6 (26), ICL=13<>37 cluster 1(N=131) has 2 sub-cluster at 2 (12), ICL=0<>37 Model Refinement takes 0.17 mins(max 3: 0.05) Fit Model 4 of (6/10) K=6->6 N=2420 EM 6 takes 0 mins, 11 iterations cluster 6(N=105) has 3 sub-cluster at 3 (9), ICL=49<>41 split 6 into 3 clusters cluster 1(N=234) has 2 sub-cluster at 2 (16), ICL=43<>41 split 1 into 2 clusters cluster 5(N=134) has 3 sub-cluster at 3 (16), ICL=22<>41 cluster 2(N=111) has 7 sub-cluster at 7 (34), ICL=18<>41 cluster 3(N=288) has 2 sub-cluster at 2 (13), ICL=8.4<>41 cluster 1(N=234) has 2 sub-cluster at 2 (16), ICL=0<>41 Model Refinement takes 0.27 mins(max 4: 0.12) Fit Model 5 of (6/10) K=6->9 N=4841 EM 9 takes 0 mins, 8 iterations cluster 6(N=272) has 3 sub-cluster at 3 (7), ICL=28<>45 cluster 8(N=85) has 2 sub-cluster at 2 (13), ICL=27<>45 cluster 3(N=200) has 2 sub-cluster at 2 (8), ICL=24<>45 cluster 4(N=571) has 2 sub-cluster at 2 (6), ICL=24<>45 cluster 2(N=466) has 5 sub-cluster at 5 (15), ICL=20<>45 cluster 7(N=154) has 5 sub-cluster at 7 (40), ICL=4.4<>45 cluster 9(N=44) has 2 sub-cluster at 3 (7), ICL=4<>45 cluster 1(N=22) has 2 sub-cluster at 2 (6), ICL=0.02<>45 cluster 1(N=22) has 2 sub-cluster at 2 (6), ICL=0<>45 Model Refinement takes 0.28 mins(max 5: 0.1) Fit Model 6 of (6/10) K=9->9 N=9682 EM 9 takes 0.017 mins, 6 iterations cluster 6(N=557) has 3 sub-cluster at 3 (11), ICL=66<>48 split 6 into 3 clusters cluster 2(N=917) has 3 sub-cluster at 3 (9), ICL=52<>48 split 2 into 3 clusters cluster 4(N=1121) has 2 sub-cluster at 2 (6), ICL=45<>48 cluster 8(N=159) has 4 sub-cluster at 4 (16), ICL=42<>48 cluster 3(N=392) has 3 sub-cluster at 3 (34), ICL=38<>48 cluster 1(N=50) has 2 sub-cluster at 2 (100), ICL=35<>48 cluster 7(N=314) has 2 sub-cluster at 2 (9), ICL=7.3<>48 cluster 9(N=75) has 2 sub-cluster at 3 (6), ICL=0.024<>48 cluster 1(N=50) has 2 sub-cluster at 2 (100), ICL=0<>48 Model Refinement takes 0.32 mins(max 5: 0.1) Fit Model 7 of (6/10) K=9->13 N=9682 EM 13 takes 0.017 mins, 3 iterations cluster 6(N=1120) has 2 sub-cluster at 2 (6), ICL=42<>48 cluster 12(N=159) has 4 sub-cluster at 4 (16), ICL=42<>48 cluster 1(N=51) has 2 sub-cluster at 2 (100), ICL=37<>48 cluster 5(N=391) has 2 sub-cluster at 2 (8), ICL=37<>48 cluster 10(N=75) has 2 sub-cluster at 2 (11), ICL=18<>48 cluster 8(N=356) has 8 sub-cluster at 8 (51), ICL=12<>48 cluster 9(N=181) has 5 sub-cluster at 6 (34), ICL=8.7<>48 cluster 11(N=309) has 2 sub-cluster at 2 (7), ICL=6.6<>48 cluster 4(N=47) has 2 sub-cluster at 2 (100), ICL=4.8<>48 cluster 13(N=75) has 3 sub-cluster at 4 (14), ICL=4.4<>48 cluster 1(N=51) has 2 sub-cluster at 2 (100), ICL=0<>48 Model Refinement takes 0.35 mins(max 7: 0.083) Fit Model 8 of (6/10) K=13->13 N=9682 EM 13 takes 0 mins, 3 iterations Process completed at8 Major Iteration (Trans) (6/4) takes 1.6 mins filtered from above:318 filtered from below:0 cluster 1(N=151) has 2 sub-cluster at 2 (7), ICL=136<>22 split 1 into 2 clusters cluster 1(N=151) has 2 sub-cluster at 2 (7), ICL=0<>22 Model Refinement takes 0.033 mins(max 1: 0.033) Fit Model 1 of (6/10) K=1->2 N=302 EM 2 takes 0 mins, 21 iterations cluster 1(N=88) has 3 sub-cluster at 3 (7), ICL=109<>25 split 1 into 3 clusters cluster 2(N=214) has 2 sub-cluster at 2 (6), ICL=35<>25 split 2 into 2 clusters cluster 1(N=88) has 3 sub-cluster at 3 (7), ICL=0<>25 Model Refinement takes 0.05 mins(max 2: 0.033) Fit Model 2 of (6/10) K=2->5 N=605 EM 5 takes 0 mins, 19 iterations cluster 3(N=63) has 3 sub-cluster at 3 (7), ICL=21<>28 cluster 5(N=34) has 2 sub-cluster at 2 (100), ICL=16<>28 cluster 2(N=71) has 4 sub-cluster at 4 (25), ICL=15<>28 cluster 1(N=25) has 3 sub-cluster at 3 (21), ICL=14<>28 cluster 4(N=414) has 7 sub-cluster at 7 (32), ICL=12<>28 cluster 1(N=25) has 3 sub-cluster at 3 (21), ICL=0<>28 Model Refinement takes 0.067 mins(max 4: 0.033) Fit Model 3 of (6/10) K=5->5 N=1210 EM 5 takes 0 mins, 6 iterations cluster 5(N=85) has 2 sub-cluster at 2 (6), ICL=76<>31 split 5 into 2 clusters cluster 4(N=815) has 2 sub-cluster at 2 (5), ICL=28<>31 cluster 3(N=106) has 4 sub-cluster at 5 (25), ICL=19<>31 cluster 1(N=52) has 4 sub-cluster at 4 (14), ICL=16<>31 cluster 2(N=155) has 2 sub-cluster at 2 (13), ICL=14<>31 cluster 1(N=52) has 4 sub-cluster at 4 (14), ICL=0<>31 Model Refinement takes 0.1 mins(max 4: 0.033) Fit Model 4 of (6/10) K=5->6 N=2420 EM 6 takes 0 mins, 8 iterations cluster 3(N=259) has 2 sub-cluster at 2 (12), ICL=40<>34 split 3 into 2 clusters cluster 5(N=147) has 8 sub-cluster at 8 (35), ICL=33<>34 cluster 4(N=1626) has 3 sub-cluster at 3 (6), ICL=23<>34 cluster 1(N=90) has 8 sub-cluster at 8 (21), ICL=17<>34 cluster 2(N=270) has 7 sub-cluster at 7 (43), ICL=17<>34 cluster 6(N=37) has 3 sub-cluster at 3 (91), ICL=9.6<>34 cluster 1(N=90) has 8 sub-cluster at 8 (21), ICL=0<>34 Model Refinement takes 0.17 mins(max 4: 0.067) Fit Model 5 of (6/10) K=6->7 N=4841 EM 7 takes 0 mins, 6 iterations cluster 5(N=3253) has 2 sub-cluster at 2 (7), ICL=66<>37 split 5 into 2 clusters cluster 2(N=570) has 2 sub-cluster at 2 (6), ICL=40<>37 split 2 into 2 clusters cluster 6(N=286) has 3 sub-cluster at 3 (11), ICL=27<>37 cluster 7(N=93) has 3 sub-cluster at 3 (13), ICL=25<>37 cluster 3(N=458) has 3 sub-cluster at 3 (9), ICL=25<>37 cluster 1(N=177) has 8 sub-cluster at 8 (22), ICL=23<>37 cluster 4(N=37) has 3 sub-cluster at 3 (47), ICL=18<>37 cluster 1(N=177) has 8 sub-cluster at 8 (22), ICL=0<>37 Model Refinement takes 0.2 mins(max 5: 0.083) Fit Model 6 of (6/10) K=7->9 N=9682 EM 9 takes 0.017 mins, 9 iterations cluster 6(N=1518) has 2 sub-cluster at 2 (6), ICL=210<>40 split 6 into 2 clusters cluster 8(N=557) has 3 sub-cluster at 3 (7), ICL=56<>40 split 8 into 3 clusters cluster 1(N=392) has 2 sub-cluster at 2 (13), ICL=43<>40 split 1 into 2 clusters cluster 4(N=908) has 3 sub-cluster at 3 (12), ICL=33<>40 cluster 5(N=60) has 2 sub-cluster at 2 (9), ICL=31<>40 cluster 9(N=122) has 3 sub-cluster at 3 (28), ICL=29<>40 cluster 2(N=453) has 2 sub-cluster at 2 (19), ICL=9.8<>40 cluster 1(N=392) has 2 sub-cluster at 2 (13), ICL=0<>40 Model Refinement takes 0.35 mins(max 6: 0.083) Fit Model 7 of (6/10) K=9->13 N=9682 EM 13 takes 0.033 mins, 17 iterations cluster 8(N=2210) has 2 sub-cluster at 2 (11), ICL=108<>40 split 8 into 2 clusters cluster 5(N=897) has 2 sub-cluster at 2 (26), ICL=57<>40 split 5 into 2 clusters cluster 13(N=123) has 2 sub-cluster at 2 (8), ICL=32<>40 cluster 6(N=60) has 2 sub-cluster at 2 (9), ICL=31<>40 cluster 10(N=258) has 2 sub-cluster at 3 (5), ICL=24<>40 cluster 12(N=104) has 6 sub-cluster at 7 (55), ICL=21<>40 cluster 1(N=217) has 3 sub-cluster at 3 (30), ICL=15<>40 cluster 2(N=224) has 6 sub-cluster at 8 (62), ICL=13<>40 cluster 3(N=418) has 4 sub-cluster at 5 (15), ICL=11<>40 cluster 11(N=285) has 6 sub-cluster at 7 (16), ICL=7.3<>40 cluster 9(N=5666) has 5 sub-cluster at 5 (7), ICL=1.8<>40 cluster 1(N=217) has 3 sub-cluster at 3 (30), ICL=0<>40 Model Refinement takes 0.43 mins(max 9: 0.1) Fit Model 8 of (6/10) K=13->15 N=9682 EM 15 takes 0.033 mins, 22 iterations cluster 7(N=61) has 2 sub-cluster at 2 (9), ICL=33<>40 cluster 15(N=123) has 2 sub-cluster at 2 (8), ICL=32<>40 cluster 12(N=274) has 2 sub-cluster at 2 (21), ICL=30<>40 cluster 14(N=88) has 2 sub-cluster at 2 (7), ICL=20<>40 cluster 3(N=406) has 2 sub-cluster at 2 (6), ICL=19<>40 cluster 1(N=210) has 7 sub-cluster at 7 (23), ICL=17<>40 cluster 8(N=73) has 3 sub-cluster at 4 (35), ICL=11<>40 cluster 13(N=286) has 7 sub-cluster at 7 (40), ICL=9.9<>40 cluster 2(N=233) has 7 sub-cluster at 8 (30), ICL=9.7<>40 cluster 5(N=393) has 8 sub-cluster at 8 (38), ICL=6.5<>40 cluster 9(N=307) has 2 sub-cluster at 2 (7), ICL=6.3<>40 cluster 1(N=210) has 7 sub-cluster at 7 (23), ICL=0<>40 Model Refinement takes 0.48 mins(max 10: 0.083) Fit Model 9 of (6/10) K=15->15 N=9682 EM 15 takes 0.017 mins, 3 iterations Process completed at9 Major Iteration (Trans) (6/4) takes 2 mins Fit Model 1 of 10 with 8 clusters => results in 8 clusters Fit Model 2 of 10 with 21 clusters => results in 13 clusters Fit Model 3 of 10 with 23 clusters => results in 19 clusters Fit Model 4 of 10 with 26 clusters => results in 21 clusters Fit Model 5 of 10 with 25 clusters => results in 21 clusters Error: processing vignette 'immunoClust.Rnw' failed with diagnostics: Running 'texi2dvi' on 'immunoClust.tex' failed. LaTeX errors: ! LaTeX Error: File `inputenx.sty' not found. Type X to quit or <RETURN> to proceed, or enter new name. (Default extension: sty) ! Emergency stop. <read *> l.15 ^^M ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘immunoClust.Rnw’ SUMMARY: processing the following file failed: ‘immunoClust.Rnw’ Error: Vignette re-building failed. Execution halted