Till Soerensen
| Snapshot Date: 2025-03-16 13:40 -0400 (Sun, 16 Mar 2025) |
| git_url: https://git.bioconductor.org/packages/immunoClust |
| git_branch: devel |
| git_last_commit: 17b4bb8 |
| git_last_commit_date: 2024-11-25 08:59:04 -0400 (Mon, 25 Nov 2024) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-03-17 11:41 -0400 (Mon, 17 Mar 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences" | 4545 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" | 4576 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" | 4528 |
| kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4459 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1030/2313 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| immunoClust 1.39.3 (landing page) Till Soerensen
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | |||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the immunoClust package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/immunoClust.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: immunoClust |
| Version: 1.39.3 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust |
| StartedAt: 2025-03-16 23:39:19 -0000 (Sun, 16 Mar 2025) |
| EndedAt: 2025-03-16 23:43:40 -0000 (Sun, 16 Mar 2025) |
| EllapsedTime: 261.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
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### Running command:
###
### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust
###
##############################################################################
##############################################################################
* checking for file ‘immunoClust/DESCRIPTION’ ... OK
* preparing ‘immunoClust’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘immunoClust.Rnw’ using Sweave
Loading required package: flowCore
filtered from above:318
filtered from below:0
cluster 1(N=151) has 2 sub-cluster at 2 (20), ICL=130<>26
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (20), ICL=0<>26
Model Refinement takes 0.017 mins(max 1: 0.017)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 10 iterations
cluster 1(N=78) has 2 sub-cluster at 2 (6), ICL=108<>30
split 1 into 2 clusters
cluster 2(N=225) has 2 sub-cluster at 2 (7), ICL=58<>30
split 2 into 2 clusters
cluster 1(N=78) has 2 sub-cluster at 2 (6), ICL=0<>30
Model Refinement takes 0.05 mins(max 2: 0.033)
Fit Model 2 of (6/10) K=2->4 N=605
EM 4 takes 0 mins, 10 iterations
cluster 2(N=116) has 2 sub-cluster at 2 (6), ICL=59<>34
split 2 into 2 clusters
cluster 1(N=54) has 2 sub-cluster at 2 (100), ICL=55<>34
split 1 into 2 clusters
cluster 4(N=53) has 2 sub-cluster at 2 (6), ICL=37<>34
split 4 into 2 clusters
cluster 3(N=391) has 7 sub-cluster at 8 (32), ICL=1.5<>34
cluster 1(N=54) has 2 sub-cluster at 2 (100), ICL=0<>34
Model Refinement takes 0.067 mins(max 3: 0.033)
Fit Model 3 of (6/10) K=4->7 N=1210
EM 6 takes 0.017 mins, 8 iterations
cluster 6(N=39) has 3 sub-cluster at 3 (10), ICL=28<>37
cluster 2(N=62) has 5 sub-cluster at 5 (39), ICL=25<>37
cluster 1(N=131) has 2 sub-cluster at 2 (12), ICL=21<>37
cluster 5(N=87) has 4 sub-cluster at 4 (19), ICL=18<>37
cluster 3(N=129) has 5 sub-cluster at 6 (26), ICL=13<>37
cluster 1(N=131) has 2 sub-cluster at 2 (12), ICL=0<>37
Model Refinement takes 0.17 mins(max 3: 0.05)
Fit Model 4 of (6/10) K=6->6 N=2420
EM 6 takes 0 mins, 11 iterations
cluster 6(N=105) has 3 sub-cluster at 3 (9), ICL=49<>41
split 6 into 3 clusters
cluster 1(N=234) has 2 sub-cluster at 2 (16), ICL=43<>41
split 1 into 2 clusters
cluster 5(N=134) has 3 sub-cluster at 3 (16), ICL=22<>41
cluster 2(N=111) has 7 sub-cluster at 7 (34), ICL=18<>41
cluster 3(N=288) has 2 sub-cluster at 2 (13), ICL=8.4<>41
cluster 1(N=234) has 2 sub-cluster at 2 (16), ICL=0<>41
Model Refinement takes 0.27 mins(max 4: 0.12)
Fit Model 5 of (6/10) K=6->9 N=4841
EM 9 takes 0 mins, 8 iterations
cluster 6(N=272) has 3 sub-cluster at 3 (7), ICL=28<>45
cluster 8(N=85) has 2 sub-cluster at 2 (13), ICL=27<>45
cluster 3(N=200) has 2 sub-cluster at 2 (8), ICL=24<>45
cluster 4(N=571) has 2 sub-cluster at 2 (6), ICL=24<>45
cluster 2(N=466) has 5 sub-cluster at 5 (15), ICL=20<>45
cluster 7(N=154) has 5 sub-cluster at 7 (40), ICL=4.4<>45
cluster 9(N=44) has 2 sub-cluster at 3 (7), ICL=4<>45
cluster 1(N=22) has 2 sub-cluster at 2 (6), ICL=0.02<>45
cluster 1(N=22) has 2 sub-cluster at 2 (6), ICL=0<>45
Model Refinement takes 0.28 mins(max 5: 0.1)
Fit Model 6 of (6/10) K=9->9 N=9682
EM 9 takes 0.017 mins, 6 iterations
cluster 6(N=557) has 3 sub-cluster at 3 (11), ICL=66<>48
split 6 into 3 clusters
cluster 2(N=917) has 3 sub-cluster at 3 (9), ICL=52<>48
split 2 into 3 clusters
cluster 4(N=1121) has 2 sub-cluster at 2 (6), ICL=45<>48
cluster 8(N=159) has 4 sub-cluster at 4 (16), ICL=42<>48
cluster 3(N=392) has 3 sub-cluster at 3 (34), ICL=38<>48
cluster 1(N=50) has 2 sub-cluster at 2 (100), ICL=35<>48
cluster 7(N=314) has 2 sub-cluster at 2 (9), ICL=7.3<>48
cluster 9(N=75) has 2 sub-cluster at 3 (6), ICL=0.024<>48
cluster 1(N=50) has 2 sub-cluster at 2 (100), ICL=0<>48
Model Refinement takes 0.32 mins(max 5: 0.1)
Fit Model 7 of (6/10) K=9->13 N=9682
EM 13 takes 0.017 mins, 3 iterations
cluster 6(N=1120) has 2 sub-cluster at 2 (6), ICL=42<>48
cluster 12(N=159) has 4 sub-cluster at 4 (16), ICL=42<>48
cluster 1(N=51) has 2 sub-cluster at 2 (100), ICL=37<>48
cluster 5(N=391) has 2 sub-cluster at 2 (8), ICL=37<>48
cluster 10(N=75) has 2 sub-cluster at 2 (11), ICL=18<>48
cluster 8(N=356) has 8 sub-cluster at 8 (51), ICL=12<>48
cluster 9(N=181) has 5 sub-cluster at 6 (34), ICL=8.7<>48
cluster 11(N=309) has 2 sub-cluster at 2 (7), ICL=6.6<>48
cluster 4(N=47) has 2 sub-cluster at 2 (100), ICL=4.8<>48
cluster 13(N=75) has 3 sub-cluster at 4 (14), ICL=4.4<>48
cluster 1(N=51) has 2 sub-cluster at 2 (100), ICL=0<>48
Model Refinement takes 0.35 mins(max 7: 0.083)
Fit Model 8 of (6/10) K=13->13 N=9682
EM 13 takes 0 mins, 3 iterations
Process completed at8
Major Iteration (Trans) (6/4) takes 1.6 mins
filtered from above:318
filtered from below:0
cluster 1(N=151) has 2 sub-cluster at 2 (7), ICL=136<>22
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (7), ICL=0<>22
Model Refinement takes 0.033 mins(max 1: 0.033)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 21 iterations
cluster 1(N=88) has 3 sub-cluster at 3 (7), ICL=109<>25
split 1 into 3 clusters
cluster 2(N=214) has 2 sub-cluster at 2 (6), ICL=35<>25
split 2 into 2 clusters
cluster 1(N=88) has 3 sub-cluster at 3 (7), ICL=0<>25
Model Refinement takes 0.05 mins(max 2: 0.033)
Fit Model 2 of (6/10) K=2->5 N=605
EM 5 takes 0 mins, 19 iterations
cluster 3(N=63) has 3 sub-cluster at 3 (7), ICL=21<>28
cluster 5(N=34) has 2 sub-cluster at 2 (100), ICL=16<>28
cluster 2(N=71) has 4 sub-cluster at 4 (25), ICL=15<>28
cluster 1(N=25) has 3 sub-cluster at 3 (21), ICL=14<>28
cluster 4(N=414) has 7 sub-cluster at 7 (32), ICL=12<>28
cluster 1(N=25) has 3 sub-cluster at 3 (21), ICL=0<>28
Model Refinement takes 0.067 mins(max 4: 0.033)
Fit Model 3 of (6/10) K=5->5 N=1210
EM 5 takes 0 mins, 6 iterations
cluster 5(N=85) has 2 sub-cluster at 2 (6), ICL=76<>31
split 5 into 2 clusters
cluster 4(N=815) has 2 sub-cluster at 2 (5), ICL=28<>31
cluster 3(N=106) has 4 sub-cluster at 5 (25), ICL=19<>31
cluster 1(N=52) has 4 sub-cluster at 4 (14), ICL=16<>31
cluster 2(N=155) has 2 sub-cluster at 2 (13), ICL=14<>31
cluster 1(N=52) has 4 sub-cluster at 4 (14), ICL=0<>31
Model Refinement takes 0.1 mins(max 4: 0.033)
Fit Model 4 of (6/10) K=5->6 N=2420
EM 6 takes 0 mins, 8 iterations
cluster 3(N=259) has 2 sub-cluster at 2 (12), ICL=40<>34
split 3 into 2 clusters
cluster 5(N=147) has 8 sub-cluster at 8 (35), ICL=33<>34
cluster 4(N=1626) has 3 sub-cluster at 3 (6), ICL=23<>34
cluster 1(N=90) has 8 sub-cluster at 8 (21), ICL=17<>34
cluster 2(N=270) has 7 sub-cluster at 7 (43), ICL=17<>34
cluster 6(N=37) has 3 sub-cluster at 3 (91), ICL=9.6<>34
cluster 1(N=90) has 8 sub-cluster at 8 (21), ICL=0<>34
Model Refinement takes 0.17 mins(max 4: 0.067)
Fit Model 5 of (6/10) K=6->7 N=4841
EM 7 takes 0 mins, 6 iterations
cluster 5(N=3253) has 2 sub-cluster at 2 (7), ICL=66<>37
split 5 into 2 clusters
cluster 2(N=570) has 2 sub-cluster at 2 (6), ICL=40<>37
split 2 into 2 clusters
cluster 6(N=286) has 3 sub-cluster at 3 (11), ICL=27<>37
cluster 7(N=93) has 3 sub-cluster at 3 (13), ICL=25<>37
cluster 3(N=458) has 3 sub-cluster at 3 (9), ICL=25<>37
cluster 1(N=177) has 8 sub-cluster at 8 (22), ICL=23<>37
cluster 4(N=37) has 3 sub-cluster at 3 (47), ICL=18<>37
cluster 1(N=177) has 8 sub-cluster at 8 (22), ICL=0<>37
Model Refinement takes 0.2 mins(max 5: 0.083)
Fit Model 6 of (6/10) K=7->9 N=9682
EM 9 takes 0.017 mins, 9 iterations
cluster 6(N=1518) has 2 sub-cluster at 2 (6), ICL=210<>40
split 6 into 2 clusters
cluster 8(N=557) has 3 sub-cluster at 3 (7), ICL=56<>40
split 8 into 3 clusters
cluster 1(N=392) has 2 sub-cluster at 2 (13), ICL=43<>40
split 1 into 2 clusters
cluster 4(N=908) has 3 sub-cluster at 3 (12), ICL=33<>40
cluster 5(N=60) has 2 sub-cluster at 2 (9), ICL=31<>40
cluster 9(N=122) has 3 sub-cluster at 3 (28), ICL=29<>40
cluster 2(N=453) has 2 sub-cluster at 2 (19), ICL=9.8<>40
cluster 1(N=392) has 2 sub-cluster at 2 (13), ICL=0<>40
Model Refinement takes 0.35 mins(max 6: 0.083)
Fit Model 7 of (6/10) K=9->13 N=9682
EM 13 takes 0.033 mins, 17 iterations
cluster 8(N=2210) has 2 sub-cluster at 2 (11), ICL=108<>40
split 8 into 2 clusters
cluster 5(N=897) has 2 sub-cluster at 2 (26), ICL=57<>40
split 5 into 2 clusters
cluster 13(N=123) has 2 sub-cluster at 2 (8), ICL=32<>40
cluster 6(N=60) has 2 sub-cluster at 2 (9), ICL=31<>40
cluster 10(N=258) has 2 sub-cluster at 3 (5), ICL=24<>40
cluster 12(N=104) has 6 sub-cluster at 7 (55), ICL=21<>40
cluster 1(N=217) has 3 sub-cluster at 3 (30), ICL=15<>40
cluster 2(N=224) has 6 sub-cluster at 8 (62), ICL=13<>40
cluster 3(N=418) has 4 sub-cluster at 5 (15), ICL=11<>40
cluster 11(N=285) has 6 sub-cluster at 7 (16), ICL=7.3<>40
cluster 9(N=5666) has 5 sub-cluster at 5 (7), ICL=1.8<>40
cluster 1(N=217) has 3 sub-cluster at 3 (30), ICL=0<>40
Model Refinement takes 0.43 mins(max 9: 0.1)
Fit Model 8 of (6/10) K=13->15 N=9682
EM 15 takes 0.033 mins, 22 iterations
cluster 7(N=61) has 2 sub-cluster at 2 (9), ICL=33<>40
cluster 15(N=123) has 2 sub-cluster at 2 (8), ICL=32<>40
cluster 12(N=274) has 2 sub-cluster at 2 (21), ICL=30<>40
cluster 14(N=88) has 2 sub-cluster at 2 (7), ICL=20<>40
cluster 3(N=406) has 2 sub-cluster at 2 (6), ICL=19<>40
cluster 1(N=210) has 7 sub-cluster at 7 (23), ICL=17<>40
cluster 8(N=73) has 3 sub-cluster at 4 (35), ICL=11<>40
cluster 13(N=286) has 7 sub-cluster at 7 (40), ICL=9.9<>40
cluster 2(N=233) has 7 sub-cluster at 8 (30), ICL=9.7<>40
cluster 5(N=393) has 8 sub-cluster at 8 (38), ICL=6.5<>40
cluster 9(N=307) has 2 sub-cluster at 2 (7), ICL=6.3<>40
cluster 1(N=210) has 7 sub-cluster at 7 (23), ICL=0<>40
Model Refinement takes 0.48 mins(max 10: 0.083)
Fit Model 9 of (6/10) K=15->15 N=9682
EM 15 takes 0.017 mins, 3 iterations
Process completed at9
Major Iteration (Trans) (6/4) takes 2 mins
Fit Model 1 of 10 with 8 clusters
=> results in 8 clusters
Fit Model 2 of 10 with 21 clusters
=> results in 13 clusters
Fit Model 3 of 10 with 23 clusters
=> results in 19 clusters
Fit Model 4 of 10 with 26 clusters
=> results in 21 clusters
Fit Model 5 of 10 with 25 clusters
=> results in 21 clusters
Error: processing vignette 'immunoClust.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'immunoClust.tex' failed.
LaTeX errors:
! LaTeX Error: File `inputenx.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
! Emergency stop.
<read *>
l.15 ^^M
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘immunoClust.Rnw’
SUMMARY: processing the following file failed:
‘immunoClust.Rnw’
Error: Vignette re-building failed.
Execution halted