Till Soerensen
| Snapshot Date: 2025-03-18 13:40 -0400 (Tue, 18 Mar 2025) |
| git_url: https://git.bioconductor.org/packages/immunoClust |
| git_branch: devel |
| git_last_commit: 17b4bb8 |
| git_last_commit_date: 2024-11-25 08:59:04 -0400 (Mon, 25 Nov 2024) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-03-19 11:47 -0400 (Wed, 19 Mar 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-03-13 r87965) -- "Unsuffered Consequences" | 4742 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences" | 4545 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" | 4576 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" | 4528 |
| kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4459 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1030/2313 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| immunoClust 1.39.3 (landing page) Till Soerensen
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the immunoClust package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/immunoClust.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: immunoClust |
| Version: 1.39.3 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust |
| StartedAt: 2025-03-18 23:45:27 -0000 (Tue, 18 Mar 2025) |
| EndedAt: 2025-03-18 23:49:34 -0000 (Tue, 18 Mar 2025) |
| EllapsedTime: 247.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
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### Running command:
###
### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust
###
##############################################################################
##############################################################################
* checking for file ‘immunoClust/DESCRIPTION’ ... OK
* preparing ‘immunoClust’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘immunoClust.Rnw’ using Sweave
Loading required package: flowCore
filtered from above:318
filtered from below:0
cluster 1(N=151) has 2 sub-cluster at 2 (11), ICL=150<>26
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (11), ICL=0<>26
Model Refinement takes 0.067 mins(max 1: 0.067)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 6 iterations
cluster 2(N=91) has 3 sub-cluster at 3 (7), ICL=114<>30
split 2 into 3 clusters
cluster 1(N=214) has 2 sub-cluster at 2 (5), ICL=30<>30
split 1 into 2 clusters
cluster 1(N=214) has 2 sub-cluster at 2 (5), ICL=0<>30
Model Refinement takes 0.083 mins(max 1: 0.05)
Fit Model 2 of (6/10) K=2->5 N=605
EM 5 takes 0 mins, 12 iterations
cluster 5(N=51) has 3 sub-cluster at 3 (8), ICL=21<>34
cluster 3(N=53) has 4 sub-cluster at 4 (9), ICL=14<>34
cluster 4(N=72) has 5 sub-cluster at 6 (24), ICL=14<>34
cluster 1(N=420) has 5 sub-cluster at 5 (30), ICL=9.3<>34
cluster 2(N=14) has 2 sub-cluster at 2 (100), ICL=4.3<>34
cluster 1(N=420) has 5 sub-cluster at 5 (30), ICL=0<>34
Model Refinement takes 0.083 mins(max 1: 0.033)
Fit Model 3 of (6/10) K=5->5 N=1210
EM 5 takes 0 mins, 9 iterations
cluster 5(N=111) has 2 sub-cluster at 2 (11), ICL=68<>37
split 5 into 2 clusters
cluster 2(N=39) has 3 sub-cluster at 3 (7), ICL=44<>37
split 2 into 3 clusters
cluster 4(N=141) has 5 sub-cluster at 5 (21), ICL=19<>37
cluster 3(N=124) has 6 sub-cluster at 7 (21), ICL=14<>37
cluster 2(N=39) has 3 sub-cluster at 3 (7), ICL=0<>37
Model Refinement takes 0.18 mins(max 1: 0.05)
Fit Model 4 of (6/10) K=5->8 N=2420
EM 8 takes 0 mins, 9 iterations
cluster 4(N=12) has 2 sub-cluster at 2 (100), ICL=44<>41
split 4 into 2 clusters
cluster 7(N=95) has 7 sub-cluster at 8 (21), ICL=25<>41
cluster 8(N=146) has 3 sub-cluster at 3 (11), ICL=20<>41
cluster 5(N=236) has 5 sub-cluster at 5 (22), ICL=11<>41
cluster 6(N=280) has 2 sub-cluster at 2 (8), ICL=10<>41
cluster 3(N=25) has 2 sub-cluster at 2 (7), ICL=9.7<>41
cluster 1(N=1609) has 3 sub-cluster at 3 (6), ICL=0.1<>41
cluster 1(N=1609) has 3 sub-cluster at 3 (6), ICL=0<>41
Model Refinement takes 0.27 mins(max 1: 0.15)
Fit Model 5 of (6/10) K=8->9 N=4841
EM 8 takes 0 mins, 6 iterations
cluster 8(N=274) has 3 sub-cluster at 3 (14), ICL=34<>45
cluster 3(N=76) has 7 sub-cluster at 7 (24), ICL=28<>45
cluster 7(N=211) has 2 sub-cluster at 2 (17), ICL=22<>45
cluster 2(N=48) has 2 sub-cluster at 2 (100), ICL=18<>45
cluster 5(N=446) has 4 sub-cluster at 5 (8), ICL=6.6<>45
cluster 1(N=3223) has 4 sub-cluster at 4 (8), ICL=4.8<>45
cluster 6(N=565) has 7 sub-cluster at 8 (17), ICL=2.7<>45
cluster 1(N=3223) has 4 sub-cluster at 4 (8), ICL=0<>45
Model Refinement takes 0.23 mins(max 1: 0.1)
Fit Model 6 of (6/10) K=8->8 N=9682
EM 8 takes 0 mins, 6 iterations
cluster 1(N=6477) has 3 sub-cluster at 3 (7), ICL=72<>48
split 1 into 3 clusters
cluster 8(N=557) has 3 sub-cluster at 3 (7), ICL=61<>48
split 8 into 3 clusters
cluster 5(N=916) has 3 sub-cluster at 3 (10), ICL=51<>48
split 5 into 3 clusters
cluster 6(N=1121) has 2 sub-cluster at 2 (8), ICL=49<>48
split 6 into 2 clusters
cluster 3(N=155) has 4 sub-cluster at 4 (16), ICL=41<>48
cluster 7(N=392) has 3 sub-cluster at 3 (34), ICL=38<>48
cluster 4(N=50) has 2 sub-cluster at 2 (100), ICL=37<>48
cluster 2(N=77) has 3 sub-cluster at 4 (46), ICL=17<>48
cluster 1(N=6477) has 3 sub-cluster at 3 (7), ICL=0<>48
Model Refinement takes 0.27 mins(max 1: 0.1)
Fit Model 7 of (6/10) K=8->15 N=9682
EM 15 takes 0.033 mins, 13 iterations
cluster 12(N=392) has 2 sub-cluster at 2 (13), ICL=41<>48
cluster 6(N=51) has 2 sub-cluster at 2 (100), ICL=38<>48
cluster 5(N=123) has 2 sub-cluster at 2 (8), ICL=30<>48
cluster 11(N=416) has 2 sub-cluster at 2 (6), ICL=19<>48
cluster 15(N=77) has 6 sub-cluster at 7 (51), ICL=17<>48
cluster 13(N=362) has 2 sub-cluster at 2 (7), ICL=13<>48
cluster 14(N=175) has 6 sub-cluster at 8 (48), ICL=9.1<>48
cluster 9(N=52) has 2 sub-cluster at 2 (100), ICL=6<>48
cluster 3(N=305) has 2 sub-cluster at 2 (8), ICL=3.4<>48
cluster 4(N=76) has 3 sub-cluster at 4 (12), ICL=3.1<>48
cluster 7(N=386) has 8 sub-cluster at 8 (45), ICL=0.43<>48
cluster 3(N=305) has 2 sub-cluster at 2 (8), ICL=0<>48
Model Refinement takes 0.43 mins(max 2: 0.083)
Fit Model 8 of (6/10) K=15->15 N=9682
EM 15 takes 0.017 mins, 3 iterations
Process completed at8
Major Iteration (Trans) (6/4) takes 1.7 mins
filtered from above:318
filtered from below:0
cluster 1(N=151) has 2 sub-cluster at 2 (11), ICL=185<>22
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (11), ICL=0<>22
Model Refinement takes 0.017 mins(max 1: 0.017)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 7 iterations
cluster 1(N=70) has 3 sub-cluster at 3 (8), ICL=86<>25
split 1 into 3 clusters
cluster 2(N=233) has 2 sub-cluster at 2 (5), ICL=67<>25
split 2 into 2 clusters
cluster 1(N=70) has 3 sub-cluster at 3 (8), ICL=0<>25
Model Refinement takes 0.05 mins(max 2: 0.033)
Fit Model 2 of (6/10) K=2->5 N=605
EM 5 takes 0 mins, 12 iterations
cluster 4(N=35) has 2 sub-cluster at 2 (100), ICL=43<>28
split 4 into 2 clusters
cluster 1(N=75) has 2 sub-cluster at 2 (13), ICL=24<>28
cluster 2(N=59) has 2 sub-cluster at 2 (16), ICL=17<>28
cluster 3(N=21) has 2 sub-cluster at 2 (100), ICL=6<>28
cluster 5(N=419) has 3 sub-cluster at 3 (10), ICL=1.9<>28
cluster 1(N=75) has 2 sub-cluster at 2 (13), ICL=0<>28
Model Refinement takes 0.05 mins(max 1: 0.017)
Fit Model 3 of (6/10) K=5->6 N=1210
EM 6 takes 0 mins, 12 iterations
cluster 3(N=52) has 3 sub-cluster at 3 (20), ICL=23<>31
cluster 4(N=76) has 3 sub-cluster at 3 (14), ICL=23<>31
cluster 2(N=110) has 6 sub-cluster at 6 (26), ICL=21<>31
cluster 1(N=130) has 7 sub-cluster at 7 (28), ICL=18<>31
cluster 6(N=834) has 4 sub-cluster at 4 (7), ICL=5.2<>31
cluster 5(N=16) has 2 sub-cluster at 2 (9), ICL=3.2<>31
cluster 1(N=130) has 7 sub-cluster at 7 (28), ICL=0<>31
Model Refinement takes 0.12 mins(max 1: 0.033)
Fit Model 4 of (6/10) K=6->6 N=2420
EM 6 takes 0 mins, 10 iterations
cluster 6(N=1632) has 3 sub-cluster at 3 (9), ICL=59<>34
split 6 into 3 clusters
cluster 2(N=263) has 2 sub-cluster at 2 (8), ICL=45<>34
split 2 into 2 clusters
cluster 4(N=133) has 4 sub-cluster at 4 (37), ICL=26<>34
cluster 5(N=36) has 2 sub-cluster at 3 (10), ICL=25<>34
cluster 3(N=99) has 2 sub-cluster at 2 (17), ICL=24<>34
cluster 1(N=268) has 4 sub-cluster at 4 (13), ICL=19<>34
cluster 1(N=268) has 4 sub-cluster at 4 (13), ICL=0<>34
Model Refinement takes 0.18 mins(max 6: 0.083)
Fit Model 5 of (6/10) K=6->9 N=4841
EM 9 takes 0 mins, 19 iterations
cluster 8(N=185) has 2 sub-cluster at 2 (5), ICL=60<>37
split 8 into 2 clusters
cluster 5(N=291) has 3 sub-cluster at 3 (11), ICL=30<>37
cluster 1(N=563) has 2 sub-cluster at 2 (6), ICL=29<>37
cluster 6(N=72) has 3 sub-cluster at 3 (7), ICL=29<>37
cluster 4(N=186) has 5 sub-cluster at 5 (28), ICL=19<>37
cluster 2(N=464) has 4 sub-cluster at 4 (27), ICL=16<>37
cluster 3(N=21) has 2 sub-cluster at 2 (100), ICL=9.9<>37
cluster 1(N=563) has 2 sub-cluster at 2 (6), ICL=0<>37
Model Refinement takes 0.3 mins(max 7: 0.083)
Fit Model 6 of (6/10) K=9->10 N=9682
EM 10 takes 0.017 mins, 6 iterations
cluster 5(N=561) has 3 sub-cluster at 3 (7), ICL=65<>40
split 5 into 3 clusters
cluster 6(N=155) has 4 sub-cluster at 4 (16), ICL=46<>40
split 6 into 4 clusters
cluster 4(N=392) has 3 sub-cluster at 3 (34), ICL=41<>40
split 4 into 3 clusters
cluster 1(N=1121) has 2 sub-cluster at 2 (6), ICL=40<>40
split 1 into 2 clusters
cluster 2(N=908) has 3 sub-cluster at 3 (12), ICL=33<>40
cluster 3(N=59) has 2 sub-cluster at 2 (7), ICL=32<>40
cluster 8(N=315) has 2 sub-cluster at 2 (10), ICL=2.1<>40
cluster 9(N=75) has 3 sub-cluster at 4 (13), ICL=2<>40
cluster 1(N=1121) has 2 sub-cluster at 2 (6), ICL=0<>40
Model Refinement takes 0.38 mins(max 7: 0.083)
Fit Model 7 of (6/10) K=10->18 N=9682
EM 18 takes 0.017 mins, 9 iterations
cluster 4(N=59) has 2 sub-cluster at 2 (10), ICL=34<>40
cluster 3(N=898) has 3 sub-cluster at 3 (9), ICL=33<>40
cluster 10(N=90) has 6 sub-cluster at 7 (85), ICL=29<>40
cluster 12(N=23) has 2 sub-cluster at 2 (21), ICL=21<>40
cluster 8(N=365) has 7 sub-cluster at 8 (30), ICL=16<>40
cluster 11(N=91) has 5 sub-cluster at 5 (18), ICL=12<>40
cluster 5(N=223) has 7 sub-cluster at 8 (35), ICL=12<>40
cluster 7(N=137) has 7 sub-cluster at 8 (37), ICL=12<>40
cluster 9(N=180) has 6 sub-cluster at 8 (16), ICL=10<>40
cluster 16(N=308) has 7 sub-cluster at 8 (47), ICL=9.3<>40
cluster 17(N=75) has 3 sub-cluster at 4 (12), ICL=6.8<>40
cluster 6(N=116) has 2 sub-cluster at 2 (8), ICL=5.2<>40
cluster 14(N=31) has 3 sub-cluster at 3 (78), ICL=5<>40
cluster 3(N=898) has 3 sub-cluster at 3 (9), ICL=0<>40
Model Refinement takes 0.48 mins(max 15: 0.1)
Fit Model 8 of (6/10) K=18->18 N=9682
EM 18 takes 0.017 mins, 3 iterations
Process completed at8
Major Iteration (Trans) (6/4) takes 1.6 mins
Fit Model 1 of 10 with 8 clusters
=> results in 8 clusters
Fit Model 2 of 10 with 21 clusters
=> results in 13 clusters
Fit Model 3 of 10 with 23 clusters
=> results in 19 clusters
Fit Model 4 of 10 with 26 clusters
=> results in 21 clusters
Fit Model 5 of 10 with 25 clusters
=> results in 21 clusters
Error: processing vignette 'immunoClust.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'immunoClust.tex' failed.
LaTeX errors:
! LaTeX Error: File `inputenx.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
! Emergency stop.
<read *>
l.15 ^^M
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘immunoClust.Rnw’
SUMMARY: processing the following file failed:
‘immunoClust.Rnw’
Error: Vignette re-building failed.
Execution halted