Back to Multiple platform build/check report for BioC 3.21:   simplified   long
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This page was generated on 2025-01-20 11:40 -0500 (Mon, 20 Jan 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" 4777
palomino7Windows Server 2022 Datacenterx64R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" 4502
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" 4461
kjohnson3macOS 13.7.1 Venturaarm64R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" 4416
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch64R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" 4403
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 930/2286HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
h5vc 2.41.0  (landing page)
Paul Theodor Pyl
Snapshot Date: 2025-01-19 13:40 -0500 (Sun, 19 Jan 2025)
git_url: https://git.bioconductor.org/packages/h5vc
git_branch: devel
git_last_commit: 2b58d09
git_last_commit_date: 2024-10-29 09:49:12 -0500 (Tue, 29 Oct 2024)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped
palomino7Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson3macOS 13.7.1 Ventura / arm64  OK    ERROR  skippedskipped
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    ERROR  skipped


BUILD results for h5vc on nebbiolo1

To the developers/maintainers of the h5vc package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/h5vc.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: h5vc
Version: 2.41.0
Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data h5vc
StartedAt: 2025-01-19 17:29:40 -0500 (Sun, 19 Jan 2025)
EndedAt: 2025-01-19 17:30:16 -0500 (Sun, 19 Jan 2025)
EllapsedTime: 36.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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### Running command:
###
###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data h5vc
###
##############################################################################
##############################################################################


* checking for file ‘h5vc/DESCRIPTION’ ... OK
* preparing ‘h5vc’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘h5vc.simple.genome.browser.Rmd’ using rmarkdown
[WARNING] This document format requires a nonempty <title> element.
  Defaulting to 'h5vc.simple.genome.browser.knit' as the title.
  To specify a title, use 'title' in metadata or --metadata title="...".
--- finished re-building ‘h5vc.simple.genome.browser.Rmd’

--- re-building ‘h5vc.tour.Rmd’ using rmarkdown

Quitting from lines 234-254 [unnamed-chunk-1] (h5vc.tour.Rmd)
Error: processing vignette 'h5vc.tour.Rmd' failed with diagnostics:
Failed to parse URL: Bad scheme
--- failed re-building ‘h5vc.tour.Rmd’

SUMMARY: processing the following file failed:
  ‘h5vc.tour.Rmd’

Error: Vignette re-building failed.
Execution halted