Back to Multiple platform build/check report for BioC 3.21: simplified long |
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This page was generated on 2025-03-17 11:37 -0400 (Mon, 17 Mar 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences" | 4545 |
lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" | 4576 |
kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" | 4528 |
kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4459 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 903/2313 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
gpuMagic 1.23.0 (landing page) Jiefei Wang
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ![]() | |||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | ![]() | ||||||||
kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | ERROR | ERROR | skipped | ||||||||||
To the developers/maintainers of the gpuMagic package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/gpuMagic.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: gpuMagic |
Version: 1.23.0 |
Command: rm -rf gpuMagic.buildbin-libdir && mkdir gpuMagic.buildbin-libdir && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL --build --library=gpuMagic.buildbin-libdir gpuMagic_1.23.0.tar.gz |
StartedAt: 2025-03-17 07:59:08 -0400 (Mon, 17 Mar 2025) |
EndedAt: 2025-03-17 08:00:31 -0400 (Mon, 17 Mar 2025) |
EllapsedTime: 82.8 seconds |
RetCode: 0 |
Status: OK |
PackageFile: gpuMagic_1.23.0.zip |
PackageFileSize: 1.568 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf gpuMagic.buildbin-libdir && mkdir gpuMagic.buildbin-libdir && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL --build --library=gpuMagic.buildbin-libdir gpuMagic_1.23.0.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'gpuMagic' ... ** this is package 'gpuMagic' version '1.23.0' ** using staged installation ** libs using C++ compiler: 'G__~1.EXE (GCC) 14.2.0' using C++11 g++ -std=gnu++11 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -IE:/biocbuild/bbs-3.21-bioc/R/include -I../inst/include/OpenCL_header -DCL_TARGET_OPENCL_VERSION=220 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c C_Interface.cpp -o C_Interface.o C_Interface.cpp: In function 'SEXPREC* download(SEXP)': C_Interface.cpp:142:19: warning: 'res' may be used uninitialized [-Wmaybe-uninitialized] 142 | return(res); | ^ C_Interface.cpp:112:14: note: 'res' was declared here 112 | SEXP res; | ^~~ g++ -std=gnu++11 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -IE:/biocbuild/bbs-3.21-bioc/R/include -I../inst/include/OpenCL_header -DCL_TARGET_OPENCL_VERSION=220 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c R_functionRegistration.cpp -o R_functionRegistration.o g++ -std=gnu++11 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -IE:/biocbuild/bbs-3.21-bioc/R/include -I../inst/include/OpenCL_header -DCL_TARGET_OPENCL_VERSION=220 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Tools.cpp -o Tools.o g++ -std=gnu++11 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -IE:/biocbuild/bbs-3.21-bioc/R/include -I../inst/include/OpenCL_header -DCL_TARGET_OPENCL_VERSION=220 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c kernelManager.cpp -o kernelManager.o g++ -std=gnu++11 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -IE:/biocbuild/bbs-3.21-bioc/R/include -I../inst/include/OpenCL_header -DCL_TARGET_OPENCL_VERSION=220 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c openArray.cpp -o openArray.o g++ -shared -s -static-libgcc -o gpuMagic.dll tmp.def C_Interface.o R_functionRegistration.o Tools.o kernelManager.o openArray.o C:/Windows/system32/OpenCL.dll -LC:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools45/x86_64-w64-mingw32.static.posix/lib -LE:/biocbuild/bbs-3.21-bioc/R/bin/x64 -lR installing to E:/biocbuild/bbs-3.21-bioc/meat/gpuMagic.buildbin-libdir/00LOCK-gpuMagic/00new/gpuMagic/libs/x64 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location No device has been found, please make sure the computer has a graphic card or the driver has been properly installed. Hint: For CPU, you can install the intel's / ATI's graphic driver for the intel's / AMD's CPU respectively. For GPU, you need to download the graphic driver from your vendor's website. ** testing if installed package can be loaded from final location No device has been found, please make sure the computer has a graphic card or the driver has been properly installed. Hint: For CPU, you can install the intel's / ATI's graphic driver for the intel's / AMD's CPU respectively. For GPU, you need to download the graphic driver from your vendor's website. ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'gpuMagic' as gpuMagic_1.23.0.zip * DONE (gpuMagic)