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This page was generated on 2025-03-17 11:38 -0400 (Mon, 17 Mar 2025).

HostnameOSArch (*)R versionInstalled pkgs
palomino7Windows Server 2022 Datacenterx64R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences" 4545
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" 4576
kjohnson3macOS 13.7.1 Venturaarm64R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" 4528
kunpeng2Linux (openEuler 24.03 LTS)aarch64R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" 4459
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 669/2313HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
epiregulon.extra 1.3.2  (landing page)
Xiaosai Yao
Snapshot Date: 2025-03-16 13:40 -0400 (Sun, 16 Mar 2025)
git_url: https://git.bioconductor.org/packages/epiregulon.extra
git_branch: devel
git_last_commit: a4d5cc1
git_last_commit_date: 2025-03-10 11:35:58 -0400 (Mon, 10 Mar 2025)
palomino7Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson3macOS 13.7.1 Ventura / arm64  OK    ERROR  skippedskipped
kunpeng2Linux (openEuler 24.03 LTS) / aarch64  OK    ERROR  skipped


BUILD results for epiregulon.extra on lconway

To the developers/maintainers of the epiregulon.extra package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/epiregulon.extra.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: epiregulon.extra
Version: 1.3.2
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data epiregulon.extra
StartedAt: 2025-03-16 16:47:56 -0400 (Sun, 16 Mar 2025)
EndedAt: 2025-03-16 16:49:48 -0400 (Sun, 16 Mar 2025)
EllapsedTime: 112.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data epiregulon.extra
###
##############################################################################
##############################################################################


* checking for file ‘epiregulon.extra/DESCRIPTION’ ... OK
* preparing ‘epiregulon.extra’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Data_visualization.Rmd’ using rmarkdown
2025-03-16 16:49:32.741 R[27831:415619877] XType: com.apple.fonts is not accessible.
2025-03-16 16:49:32.743 R[27831:415619877] XType: XTFontStaticRegistry is enabled.

Quitting from Data_visualization.Rmd:205-242 [enrichment]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `msigdbr_check_data()`:
! Please run the following command to install the 'msigdbdf' package:
install.packages('msigdbdf', repos = 'https://igordot.r-universe.dev')
---
Backtrace:
    ▆
 1. └─EnrichmentBrowser::getGenesets(...)
 2.   └─EnrichmentBrowser:::.getMSigDb(...)
 3.     ├─base::unique(msigdbr::msigdbr_collections()$gs_cat)
 4.     └─msigdbr::msigdbr_collections()
 5.       └─msigdbr:::msigdbr_check_data()
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Data_visualization.Rmd' failed with diagnostics:
Please run the following command to install the 'msigdbdf' package:
install.packages('msigdbdf', repos = 'https://igordot.r-universe.dev')
--- failed re-building ‘Data_visualization.Rmd’

SUMMARY: processing the following file failed:
  ‘Data_visualization.Rmd’

Error: Vignette re-building failed.
Execution halted