| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-03-13 r87965) -- "Unsuffered Consequences"
| 4777 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences"
| 4545 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences"
| 4576 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences"
| 4528 |
| kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences"
| 4458 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
BUILD results for cn.farms on palomino7
To the developers/maintainers of the cn.farms package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cn.farms.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
|
raw results
Summary
Command output
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###
### Running command:
###
### chmod a+r cn.farms -R && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data cn.farms
###
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* checking for file 'cn.farms/DESCRIPTION' ... OK
* preparing 'cn.farms':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
-----------------------------------
* installing *source* package 'cn.farms' ...
** this is package 'cn.farms' version '1.55.0'
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 14.2.0'
using C++ compiler: 'G__~1.EXE (GCC) 14.2.0'
gcc -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c R_init_cnfarms.c -o R_init_cnfarms.o
g++ -std=gnu++17 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c laplace.cpp -o laplace.o
laplace.cpp: In function 'SEXPREC* momentsGauss(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
laplace.cpp:442:13: warning: unused variable 'method' [-Wunused-variable]
442 | int method=0;
| ^~~~~~
laplace.cpp: In function 'void computeParameters(double, double, double, double, double, double, int&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&)':
laplace.cpp:364:42: warning: 'I1left' may be used uninitialized [-Wmaybe-uninitialized]
364 | double I2left=(-leftMy/leftSigma)*I1left+I0left;
| ~~~~~~~~~~~~~~~~~~~^~~~~~~
laplace.cpp:198:16: note: 'I1left' was declared here
198 | double I1left;
| ^~~~~~
laplace.cpp:368:63: warning: 'I1right' may be used uninitialized [-Wmaybe-uninitialized]
368 | double rightMoment1=1.0*rightMy*I0right+1.0*rightSigma*I1right;
| ~~~~~~~~~~~~~~^~~~~~~~
laplace.cpp:199:16: note: 'I1right' was declared here
199 | double I1right;
| ^~~~~~~
gcc -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c sparse_farms.c -o sparse_farms.o
sparse_farms.c: In function 'normData':
sparse_farms.c:185:20: error: implicit declaration of function 'Calloc'; did you mean 'calloc'? [-Wimplicit-function-declaration]
185 | void** ret=Calloc(1, void*);
| ^~~~~~
| calloc
sparse_farms.c:185:30: error: expected expression before 'void'
185 | void** ret=Calloc(1, void*);
| ^~~~
sparse_farms.c:189:39: error: expected expression before 'double'
189 | E_SX_n =(double**)Calloc(nn, double*);
| ^~~~~~
sparse_farms.c:198:29: error: expected expression before 'int'
198 | nna=(int*)Calloc(1, int);
| ^~~
sparse_farms.c:204:46: error: expected expression before 'double'
204 | E_SX_n[l]=(double*)Calloc(3, double);
| ^~~~~~
sparse_farms.c: In function 'sparseFarmsC':
sparse_farms.c:264:30: error: expected expression before 'void'
264 | void** ret=Calloc(4, void*);
| ^~~~
sparse_farms.c:272:29: error: expected expression before 'int'
272 | nna=(int*)Calloc(1, int);
| ^~~
sparse_farms.c:277:31: error: expected expression before 'double'
277 | L=(double**)Calloc(2, double*);
| ^~~~~~
sparse_farms.c:279:36: error: expected expression before 'double'
279 | lapla=(double**)Calloc(nn, double*);
| ^~~~~~
sparse_farms.c:281:39: error: expected expression before 'double'
281 | E_SX_n =(double**)Calloc(nn, double*);
| ^~~~~~
sparse_farms.c:287:41: error: expected expression before 'double'
287 | L[l]=(double*)Calloc(3, double);
| ^~~~~~
sparse_farms.c:295:45: error: expected expression before 'double'
295 | lapla[l]=(double*)Calloc(3, double);
| ^~~~~~
sparse_farms.c:297:46: error: expected expression before 'double'
297 | E_SX_n[l]=(double*)Calloc(3, double);
| ^~~~~~
sparse_farms.c: In function 'deinit':
sparse_farms.c:642:17: error: implicit declaration of function 'Free'; did you mean 'free'? [-Wimplicit-function-declaration]
642 | Free(L[l]);
| ^~~~
| free
make: *** [E:/biocbuild/bbs-3.21-bioc/R/etc/x64/Makeconf:289: sparse_farms.o] Error 1
ERROR: compilation failed for package 'cn.farms'
* removing 'E:/biocbuild/bbs-3.21-bioc/tmpdir/RtmpMrsf5v/Rinst162947ead732c/cn.farms'
-----------------------------------
ERROR: package installation failed