Multiple platform build/check report for BioC 3.21 - CHECK results for biodbHmdb on palomino7

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.1 LTS)	x86_64	R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences"	4781
palomino7	Windows Server 2022 Datacenter	x64	R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences"	4537
lconway	macOS 12.7.1 Monterey	x86_64	R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences"	4567
kjohnson3	macOS 13.7.1 Ventura	arm64	R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences"	4519
kunpeng2	Linux (openEuler 24.03 LTS)	aarch64	R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences"	4451
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

CHECK results for biodbHmdb on palomino7

To the developers/maintainers of the biodbHmdb package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbHmdb.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: biodbHmdb

Version: 1.13.0

Command: E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:biodbHmdb.install-out.txt --library=E:\biocbuild\bbs-3.21-bioc\R\library --no-vignettes --timings biodbHmdb_1.13.0.tar.gz

StartedAt: 2025-03-13 23:01:39 -0400 (Thu, 13 Mar 2025)

EndedAt: 2025-03-13 23:03:16 -0400 (Thu, 13 Mar 2025)

EllapsedTime: 97.0 seconds

RetCode: 0

Status: WARNINGS

CheckDir: biodbHmdb.Rcheck

Warnings: 2

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:biodbHmdb.install-out.txt --library=E:\biocbuild\bbs-3.21-bioc\R\library --no-vignettes --timings biodbHmdb_1.13.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'E:/biocbuild/bbs-3.21-bioc/meat/biodbHmdb.Rcheck'
* using R Under development (unstable) (2025-03-01 r87860 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.3.0
    GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'biodbHmdb/DESCRIPTION' ... OK
* this is package 'biodbHmdb' version '1.13.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'biodbHmdb' can be installed ... WARNING
Found the following significant warnings:
  EntryMaker.hpp:23:21: warning: 'EntryMaker::accession_tag' will be initialized after [-Wreorder]
  EntryMaker.hpp:22:14: warning:   'bool EntryMaker::closed' [-Wreorder]
  EntryMaker.cpp:5:1: warning:   when initialized here [-Wreorder]
See 'E:/biocbuild/bbs-3.21-bioc/meat/biodbHmdb.Rcheck/00install.out' for details.
* used C++ compiler: 'G__~1.EXE (GCC) 14.2.0'
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: 'zip'
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  'HmdbMetabolitesConn' 'HmdbMetabolitesEntry' 'hmdbToSqlite'
All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files for x64 is not available
* checking files in 'vignettes' ... OK
* checking examples ... NONE
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 WARNINGs, 2 NOTEs
See
  'E:/biocbuild/bbs-3.21-bioc/meat/biodbHmdb.Rcheck/00check.log'
for details.

Installation output

biodbHmdb.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL biodbHmdb
###
##############################################################################
##############################################################################


* installing to library 'E:/biocbuild/bbs-3.21-bioc/R/library'
* installing *source* package 'biodbHmdb' ...
** this is package 'biodbHmdb' version '1.13.0'
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 14.2.0'
g++ -std=gnu++17  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/testthat/include'   -I"c:/rtools44/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c EntryMaker.cpp -o EntryMaker.o
In file included from EntryMaker.cpp:1:
EntryMaker.hpp: In constructor 'EntryMaker::EntryMaker()':
EntryMaker.hpp:23:21: warning: 'EntryMaker::accession_tag' will be initialized after [-Wreorder]
   23 |         TagDetector accession_tag;
      |                     ^~~~~~~~~~~~~
EntryMaker.hpp:22:14: warning:   'bool EntryMaker::closed' [-Wreorder]
   22 |         bool closed;
      |              ^~~~~~
EntryMaker.cpp:5:1: warning:   when initialized here [-Wreorder]
    5 | EntryMaker::EntryMaker() :
      | ^~~~~~~~~~
g++ -std=gnu++17  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/testthat/include'   -I"c:/rtools44/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c FileEntryMaker.cpp -o FileEntryMaker.o
g++ -std=gnu++17  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/testthat/include'   -I"c:/rtools44/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/testthat/include'   -I"c:/rtools44/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c StringEnrtryMaker.cpp -o StringEnrtryMaker.o
g++ -std=gnu++17  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/testthat/include'   -I"c:/rtools44/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c TagDetector.cpp -o TagDetector.o
g++ -std=gnu++17  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/testthat/include'   -I"c:/rtools44/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c XmlSplitter.cpp -o XmlSplitter.o
g++ -std=gnu++17  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/testthat/include'   -I"c:/rtools44/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c extractXmlEntries.cpp -o extractXmlEntries.o
g++ -std=gnu++17  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/testthat/include'   -I"c:/rtools44/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c test-100-TagDetector.cpp -o test-100-TagDetector.o
g++ -std=gnu++17  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/testthat/include'   -I"c:/rtools44/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c test-150-StringEntryMaker.cpp -o test-150-StringEntryMaker.o
g++ -std=gnu++17  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/testthat/include'   -I"c:/rtools44/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c test-200-XmlSplitter.cpp -o test-200-XmlSplitter.o
g++ -std=gnu++17  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/testthat/include'   -I"c:/rtools44/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c test-runner.cpp -o test-runner.o
g++ -std=gnu++17 -shared -s -static-libgcc -o biodbHmdb.dll tmp.def EntryMaker.o FileEntryMaker.o RcppExports.o StringEnrtryMaker.o TagDetector.o XmlSplitter.o extractXmlEntries.o test-100-TagDetector.o test-150-StringEntryMaker.o test-200-XmlSplitter.o test-runner.o -Lc:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Lc:/rtools44/x86_64-w64-mingw32.static.posix/lib -LE:/biocbuild/bbs-3.21-bioc/R/bin/x64 -lR
installing to E:/biocbuild/bbs-3.21-bioc/R/library/00LOCK-biodbHmdb/00new/biodbHmdb/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
No man pages found in package  'biodbHmdb' 
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbHmdb)

Tests output

biodbHmdb.Rcheck/tests/testthat.Rout

R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbHmdb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbHmdb")
biodb.INFO [2025-03-13 23:02:49.865][biodb::testContext]
biodb.INFO [2025-03-13 23:02:49.868][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-13 23:02:49.869][biodb::testContext] Test context - Tests of independent functions
biodb.INFO [2025-03-13 23:02:49.870][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-13 23:02:49.872][biodb::testContext]
biodb.INFO [2025-03-13 23:02:49.873][biodb::testThat]
biodb.INFO [2025-03-13 23:02:49.875][biodb::testThat] Running test function  test_extractXmlEntries  (" extractXmlEntries() works fine. ").
biodb.INFO [2025-03-13 23:02:49.876][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-13 23:02:49.877][biodb::testThat]
biodb.INFO [2025-03-13 23:02:50.059][biodb::testContext]
biodb.INFO [2025-03-13 23:02:50.061][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-13 23:02:50.062][biodb::testContext] Test context - Generic tests
biodb.INFO [2025-03-13 23:02:50.063][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-13 23:02:50.064][biodb::testContext]
biodb.INFO [2025-03-13 23:02:50.074][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.15.0.
biodb.DEBUG[2025-03-13 23:02:50.077][self$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.21-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2025-03-13 23:02:50.085][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-13 23:02:50.086][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-03-13 23:02:50.088][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-03-13 23:02:50.089][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:02:50.090][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:02:50.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:02:50.092][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-03-13 23:02:50.115][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-03-13 23:02:50.116][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:02:50.117][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:02:50.118][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:02:50.119][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-03-13 23:02:50.121][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-03-13 23:02:50.122][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:02:50.123][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:02:50.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:02:50.125][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-03-13 23:02:50.126][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-03-13 23:02:50.127][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-03-13 23:02:50.128][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:02:50.129][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:02:50.131][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:02:50.132][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-03-13 23:02:50.133][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-03-13 23:02:50.134][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-03-13 23:02:50.136][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:02:50.137][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:02:50.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:02:50.139][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-03-13 23:02:50.141][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-03-13 23:02:50.142][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:02:50.143][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:02:50.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:02:50.145][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-03-13 23:02:50.147][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-03-13 23:02:50.148][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-03-13 23:02:50.149][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:02:50.150][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:02:50.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:02:50.152][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-03-13 23:02:50.153][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-03-13 23:02:50.155][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:02:50.156][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:02:50.157][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:02:50.158][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-03-13 23:02:50.159][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-03-13 23:02:50.161][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-03-13 23:02:50.162][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:02:50.163][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:02:50.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:02:50.165][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-03-13 23:02:50.166][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-03-13 23:02:50.167][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-03-13 23:02:50.168][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-03-13 23:02:50.170][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-03-13 23:02:50.171][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-03-13 23:02:50.172][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:02:50.173][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:02:50.174][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:02:50.175][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-03-13 23:02:50.176][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-03-13 23:02:50.178][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:02:50.179][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:02:50.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:02:50.181][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-03-13 23:02:50.182][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-03-13 23:02:50.183][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:02:50.184][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:02:50.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:02:50.186][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-03-13 23:02:50.188][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-03-13 23:02:50.189][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:02:50.190][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:02:50.191][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:02:50.192][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-03-13 23:02:50.193][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-03-13 23:02:50.194][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:02:50.195][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:02:50.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:02:50.197][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-03-13 23:02:50.199][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-03-13 23:02:50.200][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:02:50.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:02:50.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:02:50.203][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-03-13 23:02:50.204][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-03-13 23:02:50.208][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-03-13 23:02:50.209][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:02:50.210][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:02:50.211][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:02:50.212][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-03-13 23:02:50.213][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-03-13 23:02:50.214][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-03-13 23:02:50.216][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:02:50.217][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:02:50.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:02:50.222][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-03-13 23:02:50.253][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-13 23:02:50.267][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-03-13 23:02:50.268][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-13 23:02:50.270][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-13 23:02:50.271][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-13 23:02:50.272][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-13 23:02:50.273][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-13 23:02:50.274][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-13 23:02:50.276][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-13 23:02:50.277][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-13 23:02:50.278][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-13 23:02:50.279][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-03-13 23:02:50.280][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-13 23:02:50.282][self$setPropertyValue]
biodb.DEBUG[2025-03-13 23:02:50.283][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-13 23:02:50.284][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-13 23:02:50.284][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-13 23:02:50.284][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-13 23:02:50.284][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-13 23:02:50.284][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-13 23:02:50.285][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-13 23:02:50.286][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-13 23:02:50.287][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-13 23:02:50.289][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-13 23:02:50.290][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-13 23:02:50.291][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-13 23:02:50.292][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-13 23:02:50.293][self$setPropertyValue]
biodb.DEBUG[2025-03-13 23:02:50.294][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-13 23:02:50.296][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-13 23:02:50.297][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-13 23:02:50.298][self$setPropertyValue]
biodb.DEBUG[2025-03-13 23:02:50.299][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-03-13 23:02:50.301][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-13 23:02:50.302][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-03-13 23:02:50.304][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-13 23:02:50.305][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-13 23:02:50.306][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-13 23:02:50.307][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-13 23:02:50.314][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-13 23:02:50.315][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-13 23:02:50.316][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-13 23:02:50.317][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-13 23:02:50.318][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-13 23:02:50.319][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-03-13 23:02:50.321][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-13 23:02:50.322][self$setPropertyValue]
biodb.DEBUG[2025-03-13 23:02:50.323][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-13 23:02:50.324][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-13 23:02:50.324][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-13 23:02:50.324][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-13 23:02:50.324][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-13 23:02:50.324][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-13 23:02:50.325][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-13 23:02:50.326][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-13 23:02:50.328][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-13 23:02:50.329][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-13 23:02:50.330][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-13 23:02:50.331][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-13 23:02:50.332][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-13 23:02:50.333][self$setPropertyValue]
biodb.DEBUG[2025-03-13 23:02:50.334][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-13 23:02:50.335][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-13 23:02:50.337][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-13 23:02:50.338][self$setPropertyValue]
biodb.DEBUG[2025-03-13 23:02:50.339][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-03-13 23:02:50.341][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-13 23:02:50.342][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-03-13 23:02:50.343][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-13 23:02:50.345][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-13 23:02:50.346][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-13 23:02:50.347][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-13 23:02:50.348][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-13 23:02:50.349][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-13 23:02:50.351][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-13 23:02:50.352][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-13 23:02:50.353][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-13 23:02:50.354][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-03-13 23:02:50.355][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-13 23:02:50.357][self$setPropertyValue]
biodb.DEBUG[2025-03-13 23:02:50.358][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-13 23:02:50.359][self$setPropertyValue]
biodb.DEBUG[2025-03-13 23:02:50.360][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-13 23:02:50.361][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-13 23:02:50.363][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-13 23:02:50.364][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-13 23:02:50.365][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-13 23:02:50.366][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-13 23:02:50.367][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-13 23:02:50.368][self$setPropertyValue]
biodb.DEBUG[2025-03-13 23:02:50.369][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-13 23:02:50.371][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-13 23:02:50.372][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-13 23:02:50.373][self$setPropertyValue]
biodb.DEBUG[2025-03-13 23:02:50.374][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-03-13 23:02:50.376][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-13 23:02:50.377][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-03-13 23:02:50.378][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-13 23:02:50.380][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-13 23:02:50.381][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-13 23:02:50.382][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-13 23:02:50.383][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-13 23:02:50.384][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-13 23:02:50.386][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-13 23:02:50.387][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-13 23:02:50.388][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-13 23:02:50.389][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-03-13 23:02:50.390][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-13 23:02:50.392][self$setPropertyValue]
biodb.DEBUG[2025-03-13 23:02:50.393][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-13 23:02:50.394][self$setPropertyValue]
biodb.DEBUG[2025-03-13 23:02:50.395][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-13 23:02:50.397][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-13 23:02:50.398][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-13 23:02:50.399][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-13 23:02:50.400][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-13 23:02:50.401][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-13 23:02:50.402][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-13 23:02:50.404][self$setPropertyValue]
biodb.DEBUG[2025-03-13 23:02:50.405][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-13 23:02:50.406][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-13 23:02:50.407][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-13 23:02:50.408][self$setPropertyValue]
biodb.DEBUG[2025-03-13 23:02:50.412][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-13 23:02:50.413][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:02:50.414][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:02:50.415][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:02:50.416][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:02:50.417][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:02:50.418][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:02:50.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:02:50.420][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:02:50.421][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:02:50.422][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:02:50.423][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:02:50.424][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:02:50.426][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:02:50.427][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:02:50.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:02:50.429][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:02:50.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:02:50.431][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:02:50.432][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:02:50.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:02:50.434][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:02:50.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:02:50.436][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:02:50.437][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:02:50.438][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:02:50.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:02:50.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:02:50.442][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:02:50.443][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:02:50.444][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:02:50.445][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:02:50.446][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:02:50.447][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:02:50.448][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:02:50.449][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:02:50.450][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:02:50.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:02:50.452][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:02:50.453][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:02:50.454][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:02:50.456][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:02:50.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:02:50.458][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:02:50.459][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:02:50.460][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:02:50.461][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:02:50.462][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:02:50.463][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:02:50.464][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:02:50.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:02:50.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:02:50.468][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:02:50.469][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:02:50.470][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:02:50.471][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:02:50.472][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:02:50.473][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:02:50.474][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:02:50.475][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:02:50.476][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:02:50.477][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:02:50.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:02:50.479][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:02:50.480][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:02:50.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:02:50.483][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:02:50.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:02:50.485][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:02:50.486][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:02:50.487][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:02:50.488][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:02:50.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:02:50.490][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:02:50.491][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:02:50.492][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:02:50.493][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:02:50.494][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:02:50.495][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:02:50.497][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:02:50.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:02:50.499][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:02:50.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:02:50.501][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:02:50.502][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:02:50.503][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:02:50.504][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:02:50.505][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:02:50.506][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-03-13 23:02:50.511][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-03-13 23:02:50.512][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-03-13 23:02:50.514][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-03-13 23:02:50.515][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-03-13 23:02:50.517][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-13 23:02:50.519][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-03-13 23:02:50.520][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-03-13 23:02:50.550][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-03-13 23:02:50.551][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-13 23:02:50.553][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-13 23:02:50.554][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-03-13 23:02:50.556][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-03-13 23:02:50.557][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-03-13 23:02:50.559][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-03-13 23:02:50.560][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-13 23:02:50.562][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-03-13 23:02:50.563][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-03-13 23:02:50.565][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-03-13 23:02:50.567][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-03-13 23:02:50.568][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-03-13 23:02:50.570][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-03-13 23:02:50.571][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-03-13 23:02:50.573][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-03-13 23:02:50.574][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-03-13 23:02:50.576][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-03-13 23:02:50.577][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-03-13 23:02:50.579][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-03-13 23:02:50.580][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-03-13 23:02:50.582][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-03-13 23:02:50.584][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-03-13 23:02:50.585][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-03-13 23:02:50.587][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-03-13 23:02:50.588][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-03-13 23:02:50.590][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-03-13 23:02:50.591][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-03-13 23:02:50.593][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-03-13 23:02:50.594][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-03-13 23:02:50.596][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-03-13 23:02:50.598][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-03-13 23:02:50.599][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-03-13 23:02:50.601][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-03-13 23:02:50.602][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-03-13 23:02:50.604][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-03-13 23:02:50.605][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-03-13 23:02:50.607][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-03-13 23:02:50.608][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-03-13 23:02:50.610][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-03-13 23:02:50.611][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-03-13 23:02:50.613][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-03-13 23:02:50.615][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-03-13 23:02:50.616][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-03-13 23:02:50.618][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-03-13 23:02:50.619][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-03-13 23:02:50.621][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-03-13 23:02:50.622][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-03-13 23:02:50.624][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-03-13 23:02:50.625][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-03-13 23:02:50.627][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-03-13 23:02:50.628][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-03-13 23:02:50.630][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-03-13 23:02:50.631][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-03-13 23:02:50.633][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-03-13 23:02:50.635][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-03-13 23:02:50.636][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-03-13 23:02:50.638][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-03-13 23:02:50.639][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-03-13 23:02:50.641][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-03-13 23:02:50.642][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-03-13 23:02:50.644][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-03-13 23:02:50.645][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-03-13 23:02:50.647][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-03-13 23:02:50.649][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-03-13 23:02:50.650][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-03-13 23:02:50.652][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-03-13 23:02:50.653][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-03-13 23:02:50.655][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-03-13 23:02:50.656][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-03-13 23:02:50.658][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-03-13 23:02:50.659][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-03-13 23:02:50.661][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-03-13 23:02:50.662][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-03-13 23:02:50.664][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-03-13 23:02:50.689][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-03-13 23:02:50.692][initialize] This is biodb version 1.15.0.
biodb.DEBUG[2025-03-13 23:02:50.695][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-13 23:02:50.696][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:02:50.697][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:02:50.698][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:02:50.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:02:50.704][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:02:50.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:02:50.706][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:02:50.708][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:02:50.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:02:50.710][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:02:50.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:02:50.712][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:02:50.713][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:02:50.714][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:02:50.715][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:02:50.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:02:50.717][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:02:50.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:02:50.719][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:02:50.721][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:02:50.722][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:02:50.723][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:02:50.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:02:50.725][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:02:50.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:02:50.727][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:02:50.728][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:02:50.729][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:02:50.730][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:02:50.731][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:02:50.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:02:50.733][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:02:50.734][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:02:50.735][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:02:50.736][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:02:50.737][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:02:50.738][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:02:50.739][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:02:50.741][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:02:50.742][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:02:50.743][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:02:50.744][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:02:50.745][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:02:50.746][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:02:50.747][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:02:50.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:02:50.749][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:02:50.750][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:02:50.751][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:02:50.752][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:02:50.753][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:02:50.754][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:02:50.755][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:02:50.756][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:02:50.763][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:02:50.764][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:02:50.765][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:02:50.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:02:50.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:02:50.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:02:50.770][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:02:50.771][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:02:50.772][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:02:50.773][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:02:50.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:02:50.775][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:02:50.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:02:50.777][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:02:50.778][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:02:50.779][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:02:50.780][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:02:50.781][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:02:50.782][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:02:50.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:02:50.784][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:02:50.785][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:02:50.786][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:02:50.787][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:02:50.789][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:02:50.790][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:02:50.791][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:02:50.792][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:02:50.793][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:02:50.794][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:02:50.795][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:02:50.796][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:02:50.797][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:02:50.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:02:50.800][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:02:50.801][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:02:50.802][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:02:50.803][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:02:50.805][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:02:50.807][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:02:50.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:02:50.809][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:02:50.810][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:02:50.811][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:02:50.812][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:02:50.813][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:02:50.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:02:50.815][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:02:50.816][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:02:50.818][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:02:50.819][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:02:50.820][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:02:50.821][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:02:50.822][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:02:50.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:02:50.824][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:02:50.825][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:02:50.826][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:02:50.827][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:02:50.829][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:02:50.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:02:50.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:02:50.832][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:02:50.833][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:02:50.834][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:02:50.835][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:02:50.836][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:02:50.837][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:02:50.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:02:50.841][biodb$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.21-bioc/R/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-03-13 23:02:50.850][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-03-13 23:02:50.852][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-13 23:02:50.853][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-03-13 23:02:50.854][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-13 23:02:50.855][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-13 23:02:50.857][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-03-13 23:02:50.858][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-03-13 23:02:50.859][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-03-13 23:02:50.860][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-13 23:02:50.861][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-03-13 23:02:50.862][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-13 23:02:50.864][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-13 23:02:50.865][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-03-13 23:02:50.866][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-13 23:02:50.867][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-03-13 23:02:50.867][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-03-13 23:02:50.867][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-03-13 23:02:50.867][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-03-13 23:02:50.867][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-03-13 23:02:50.867][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-03-13 23:02:50.867][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-03-13 23:02:50.867][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-03-13 23:02:50.867][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-03-13 23:02:50.867][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-03-13 23:02:50.867][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-03-13 23:02:50.867][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-03-13 23:02:50.867][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-03-13 23:02:50.867][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-03-13 23:02:50.867][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-03-13 23:02:50.867][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-03-13 23:02:50.867][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-03-13 23:02:50.867][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-03-13 23:02:50.869][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-03-13 23:02:50.870][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-13 23:02:50.870][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-03-13 23:02:50.870][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-03-13 23:02:50.871][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-03-13 23:02:50.872][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-13 23:02:50.873][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-13 23:02:50.874][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-13 23:02:50.876][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-13 23:02:50.877][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-13 23:02:50.878][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-13 23:02:50.879][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-03-13 23:02:50.879][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-03-13 23:02:50.880][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-13 23:02:50.881][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-13 23:02:50.882][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-03-13 23:02:50.884][self$setPropertyValue]
biodb.DEBUG[2025-03-13 23:02:50.889][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-03-13 23:02:50.891][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-13 23:02:50.892][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-13 23:02:50.894][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-13 23:02:50.896][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-13 23:02:50.916][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-03-13 23:02:50.918][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-03-13 23:02:50.922][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-03-13 23:02:50.926][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-13 23:02:50.929][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-13 23:02:50.931][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-13 23:02:50.932][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-03-13 23:02:50.933][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-03-13 23:02:50.935][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-03-13 23:02:50.935][self$setPropertyValue] Setting property "urls" to "E:/biocbuild/bbs-3.21-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-03-13 23:02:50.936][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-13 23:02:50.937][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-13 23:02:50.938][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-03-13 23:02:50.939][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-03-13 23:02:50.940][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-03-13 23:02:50.962][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-13 23:02:50.964][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-13 23:02:50.965][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-13 23:02:50.967][private$addConnectorRules] Create new rule for URL "E:/biocbuild/bbs-3.21-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-13 23:02:50.968][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-13 23:02:50.969][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-03-13 23:02:50.979][biodb::testThat]
biodb.INFO [2025-03-13 23:02:50.980][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-03-13 23:02:50.981][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-13 23:02:50.983][biodb::testThat]
biodb.TRACE[2025-03-13 23:02:51.000][loadFileContents] Loaded 1 files from cache: [1]: "E:/biocbuild/bbs-3.21-bioc/R/library/biodbHmdb/testref/entry-hmdb.metabolites-HMDB0000001-content.xml".
biodb.DEBUG[2025-03-13 23:02:51.003][biodb$getFactory()$createEntryFromCo ...] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-03-13 23:02:51.006][biodb$getFactory()$createEntryFromCo ...] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-03-13 23:02:51.014][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-13 23:02:51.015][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:02:51.016][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:02:51.043][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:02:51.044][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:02:51.045][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:02:51.047][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-13 23:02:51.291][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:02:51.292][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:02:51.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.295][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:02:51.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:02:51.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.312][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-13 23:02:51.313][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-13 23:02:51.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.315][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.337][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-13 23:02:51.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-13 23:02:51.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.342][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-13 23:02:51.343][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-13 23:02:51.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.346][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.347][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-13 23:02:51.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-13 23:02:51.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.352][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-13 23:02:51.353][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-13 23:02:51.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.356][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.357][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-13 23:02:51.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-13 23:02:51.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.362][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-13 23:02:51.363][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-13 23:02:51.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.366][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.367][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-13 23:02:51.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-13 23:02:51.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.372][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-13 23:02:51.373][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-13 23:02:51.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.376][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.377][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-13 23:02:51.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-13 23:02:51.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.382][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-13 23:02:51.383][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-13 23:02:51.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.386][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.387][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-13 23:02:51.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-13 23:02:51.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.392][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-13 23:02:51.393][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-13 23:02:51.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.396][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.397][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-13 23:02:51.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-13 23:02:51.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.410][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-13 23:02:51.411][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-13 23:02:51.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.413][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.415][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-13 23:02:51.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-13 23:02:51.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.420][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-13 23:02:51.421][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-13 23:02:51.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.423][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.425][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-13 23:02:51.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-13 23:02:51.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.429][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-13 23:02:51.431][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-13 23:02:51.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.433][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.434][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-13 23:02:51.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-13 23:02:51.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.439][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-13 23:02:51.440][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-13 23:02:51.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.443][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.444][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-13 23:02:51.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-13 23:02:51.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.449][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-13 23:02:51.450][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-13 23:02:51.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.453][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.454][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-13 23:02:51.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-13 23:02:51.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.459][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-13 23:02:51.460][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-13 23:02:51.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.462][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.464][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-13 23:02:51.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-13 23:02:51.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.469][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:02:51.470][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:02:51.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.472][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.474][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:02:51.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:02:51.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.479][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:02:51.480][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:02:51.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.482][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.483][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:02:51.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:02:51.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.488][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-13 23:02:51.490][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-13 23:02:51.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.492][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.493][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-13 23:02:51.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-13 23:02:51.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.498][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-03-13 23:02:51.500][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-13 23:02:51.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.502][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.503][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-03-13 23:02:51.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-13 23:02:51.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:02:51.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:02:51.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:02:51.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:02:51.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:02:51.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:02:51.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.549][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-13 23:02:51.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-13 23:02:51.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.554][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-13 23:02:51.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-13 23:02:51.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.564][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-13 23:02:51.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-13 23:02:51.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.568][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-13 23:02:51.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-13 23:02:51.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.573][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-13 23:02:51.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-13 23:02:51.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.578][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-13 23:02:51.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-13 23:02:51.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.582][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-13 23:02:51.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-13 23:02:51.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.587][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-13 23:02:51.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-13 23:02:51.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.592][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-13 23:02:51.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-13 23:02:51.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.597][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-13 23:02:51.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-13 23:02:51.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.601][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-13 23:02:51.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-13 23:02:51.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.606][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-13 23:02:51.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-13 23:02:51.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.611][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-13 23:02:51.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-13 23:02:51.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.616][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-13 23:02:51.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-13 23:02:51.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.620][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-13 23:02:51.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-13 23:02:51.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.625][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-13 23:02:51.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-13 23:02:51.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.630][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-13 23:02:51.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-13 23:02:51.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.636][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-13 23:02:51.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-13 23:02:51.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.644][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-13 23:02:51.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-13 23:02:51.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.652][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-13 23:02:51.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-13 23:02:51.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.659][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-13 23:02:51.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-13 23:02:51.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.663][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:02:51.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:02:51.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.668][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:02:51.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:02:51.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.674][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:02:51.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:02:51.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.682][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-13 23:02:51.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-13 23:02:51.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.689][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-13 23:02:51.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-13 23:02:51.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.695][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-13 23:02:51.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-13 23:02:51.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.701][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-13 23:02:51.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-13 23:02:51.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.706][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-13 23:02:51.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-13 23:02:51.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.711][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-13 23:02:51.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-13 23:02:51.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.716][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-13 23:02:51.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-13 23:02:51.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.722][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-13 23:02:51.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-13 23:02:51.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.727][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-13 23:02:51.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-13 23:02:51.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.732][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-13 23:02:51.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-13 23:02:51.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.738][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-13 23:02:51.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-13 23:02:51.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.743][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-13 23:02:51.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-13 23:02:51.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.748][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-13 23:02:51.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-13 23:02:51.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.758][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-13 23:02:51.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-13 23:02:51.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.763][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-13 23:02:51.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-13 23:02:51.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.769][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:02:51.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:02:51.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.774][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:02:51.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:02:51.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.779][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:02:51.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:02:51.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.784][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-13 23:02:51.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-13 23:02:51.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.789][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-13 23:02:51.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-13 23:02:51.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.795][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-13 23:02:51.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-13 23:02:51.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.800][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-13 23:02:51.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-13 23:02:51.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.805][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-13 23:02:51.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-13 23:02:51.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.810][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-13 23:02:51.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-13 23:02:51.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.816][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-13 23:02:51.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-13 23:02:51.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.821][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-13 23:02:51.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-13 23:02:51.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.826][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-13 23:02:51.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-13 23:02:51.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.831][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-13 23:02:51.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-13 23:02:51.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.836][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-13 23:02:51.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-13 23:02:51.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.841][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-13 23:02:51.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-13 23:02:51.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.846][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-13 23:02:51.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-13 23:02:51.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.852][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-13 23:02:51.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-13 23:02:51.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.874][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:02:51.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:02:51.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.880][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:02:51.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:02:51.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.885][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:02:51.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:02:51.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.890][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:02:51.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:02:51.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.896][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:02:51.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:02:51.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.901][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-13 23:02:51.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-13 23:02:51.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.906][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-13 23:02:51.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-13 23:02:51.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:02:51.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:02:51.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.917][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-13 23:02:51.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-13 23:02:51.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:02:51.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:02:51.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:02:51.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:02:51.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:02:51.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:02:51.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:02:51.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:02:51.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:02:51.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:02:51.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:02:51.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:02:51.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-13 23:02:51.957][biodb$getFactory()$createEntryFromCo ...] Accession numbers: HMDB0000001.
biodb.TRACE[2025-03-13 23:02:51.961][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-13 23:02:51.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-13 23:02:51.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.969][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-13 23:02:51.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-13 23:02:51.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.977][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-03-13 23:02:51.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-03-13 23:02:51.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:51.986][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-03-13 23:02:51.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-03-13 23:02:51.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:51.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:02:52.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:02:52.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.057][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-13 23:02:52.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-13 23:02:52.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:02:52.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:02:52.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:02:52.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:02:52.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:02:52.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:02:52.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:02:52.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:02:52.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:02:52.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:02:52.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:02:52.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:02:52.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.103][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-13 23:02:52.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-13 23:02:52.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.108][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-13 23:02:52.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-13 23:02:52.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.113][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-13 23:02:52.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-13 23:02:52.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:02:52.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:02:52.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:02:52.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:02:52.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:02:52.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:02:52.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.161][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:02:52.163][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:02:52.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.167][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:02:52.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:02:52.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.186][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-13 23:02:52.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-13 23:02:52.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.191][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-13 23:02:52.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-13 23:02:52.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.197][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-13 23:02:52.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-13 23:02:52.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.208][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-13 23:02:52.210][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-13 23:02:52.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.212][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.214][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-13 23:02:52.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-13 23:02:52.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.230][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-13 23:02:52.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-13 23:02:52.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.235][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-13 23:02:52.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-13 23:02:52.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.241][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-13 23:02:52.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-13 23:02:52.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.246][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-13 23:02:52.247][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-13 23:02:52.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.250][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.251][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-13 23:02:52.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-13 23:02:52.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.268][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-13 23:02:52.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-13 23:02:52.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.273][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-13 23:02:52.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-13 23:02:52.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.278][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-13 23:02:52.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-13 23:02:52.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.283][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-13 23:02:52.285][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-13 23:02:52.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.287][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.289][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-13 23:02:52.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-13 23:02:52.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.305][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-13 23:02:52.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-13 23:02:52.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.310][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-13 23:02:52.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-13 23:02:52.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.315][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-13 23:02:52.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-13 23:02:52.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.321][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-13 23:02:52.322][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-13 23:02:52.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.325][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.326][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-13 23:02:52.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-13 23:02:52.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.342][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-13 23:02:52.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-13 23:02:52.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.347][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-13 23:02:52.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-13 23:02:52.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.353][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-13 23:02:52.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-13 23:02:52.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.358][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-13 23:02:52.359][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-13 23:02:52.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.362][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.363][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-13 23:02:52.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-13 23:02:52.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.386][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:02:52.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:02:52.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.392][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:02:52.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:02:52.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.397][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:02:52.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:02:52.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.402][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:02:52.403][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:02:52.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.412][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.413][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:02:52.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:02:52.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.453][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:02:52.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:02:52.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.458][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:02:52.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:02:52.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.464][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:02:52.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:02:52.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.469][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:02:52.470][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:02:52.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.473][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.474][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:02:52.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:02:52.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.494][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-13 23:02:52.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-13 23:02:52.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.503][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-13 23:02:52.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-13 23:02:52.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.511][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-13 23:02:52.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-13 23:02:52.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.519][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-13 23:02:52.521][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-13 23:02:52.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.525][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.526][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-13 23:02:52.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-13 23:02:52.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.542][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-13 23:02:52.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-13 23:02:52.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.548][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-13 23:02:52.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-13 23:02:52.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.553][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-13 23:02:52.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-13 23:02:52.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.558][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-13 23:02:52.559][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-13 23:02:52.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.562][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.563][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-13 23:02:52.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-13 23:02:52.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.590][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-13 23:02:52.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-13 23:02:52.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.595][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-13 23:02:52.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-13 23:02:52.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.600][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-13 23:02:52.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-13 23:02:52.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.606][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-13 23:02:52.607][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-13 23:02:52.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.609][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.610][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-13 23:02:52.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-13 23:02:52.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.639][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-13 23:02:52.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-13 23:02:52.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.644][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-13 23:02:52.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-13 23:02:52.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.649][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-13 23:02:52.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-13 23:02:52.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.654][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-13 23:02:52.655][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-13 23:02:52.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.657][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.659][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-13 23:02:52.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-13 23:02:52.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.680][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-13 23:02:52.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-13 23:02:52.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.686][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-13 23:02:52.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-13 23:02:52.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.691][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-13 23:02:52.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-13 23:02:52.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.696][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-13 23:02:52.697][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-13 23:02:52.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.699][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.700][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-13 23:02:52.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-13 23:02:52.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.745][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-13 23:02:52.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-13 23:02:52.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.750][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-13 23:02:52.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-13 23:02:52.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.755][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-13 23:02:52.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-13 23:02:52.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.759][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-13 23:02:52.761][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-13 23:02:52.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.763][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.764][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-13 23:02:52.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-13 23:02:52.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.793][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-13 23:02:52.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-13 23:02:52.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.798][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-13 23:02:52.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-13 23:02:52.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.803][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-13 23:02:52.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-13 23:02:52.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.808][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-13 23:02:52.809][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-13 23:02:52.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.811][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.812][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-13 23:02:52.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-13 23:02:52.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.834][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-13 23:02:52.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-13 23:02:52.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.839][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-13 23:02:52.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-13 23:02:52.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.844][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-13 23:02:52.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-13 23:02:52.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.849][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-13 23:02:52.850][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-13 23:02:52.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.853][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.854][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-13 23:02:52.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-13 23:02:52.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.876][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-13 23:02:52.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-13 23:02:52.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.881][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-13 23:02:52.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-13 23:02:52.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.886][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-13 23:02:52.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-13 23:02:52.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.890][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-13 23:02:52.892][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-13 23:02:52.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.894][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.895][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-13 23:02:52.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-13 23:02:52.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.915][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-13 23:02:52.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-13 23:02:52.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.920][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-13 23:02:52.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-13 23:02:52.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.925][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-13 23:02:52.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-13 23:02:52.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.930][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-13 23:02:52.931][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-13 23:02:52.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.933][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.934][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-13 23:02:52.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-13 23:02:52.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.965][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:02:52.967][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:02:52.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.969][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:52.985][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-13 23:02:52.986][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-13 23:02:52.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:52.989][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.007][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-13 23:02:53.009][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-13 23:02:53.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.011][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.018][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-13 23:02:53.020][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-13 23:02:53.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.022][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.044][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-13 23:02:53.045][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-13 23:02:53.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.048][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.064][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-13 23:02:53.066][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-13 23:02:53.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.068][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.083][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-13 23:02:53.085][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-13 23:02:53.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.088][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.095][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-13 23:02:53.096][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-13 23:02:53.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.099][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.113][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:02:53.114][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:02:53.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.117][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.130][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-13 23:02:53.133][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-13 23:02:53.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.137][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.146][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-13 23:02:53.147][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-13 23:02:53.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.149][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.163][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-13 23:02:53.165][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-13 23:02:53.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.167][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.174][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-13 23:02:53.175][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-13 23:02:53.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.178][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.191][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-13 23:02:53.192][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-13 23:02:53.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.194][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.202][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:02:53.203][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:02:53.204][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.210][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.218][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-13 23:02:53.219][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-13 23:02:53.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.222][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.231][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-13 23:02:53.233][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-13 23:02:53.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.235][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.250][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-13 23:02:53.252][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-13 23:02:53.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.254][ef$get] fields variable is a list.
biodb.INFO [2025-03-13 23:02:53.276][biodb::testThat]
biodb.INFO [2025-03-13 23:02:53.277][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-03-13 23:02:53.279][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-13 23:02:53.280][biodb::testThat]
biodb.DEBUG[2025-03-13 23:02:53.293][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2025-03-13 23:02:53.299][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-03-13 23:02:53.666][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-13 23:02:53.668][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-03-13 23:02:53.671][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2025-03-13 23:02:53.672][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-13 23:02:53.689][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2025-03-13 23:02:53.690][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-03-13 23:02:53.712][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-03-13 23:02:53.713][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-03-13 23:02:53.716][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-13 23:02:53.717][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:02:53.718][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:02:53.725][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:02:53.727][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:02:53.728][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:02:53.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-13 23:02:53.734][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:02:53.735][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:02:53.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.737][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:02:53.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:02:53.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.743][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-13 23:02:53.745][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-13 23:02:53.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.747][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.749][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-13 23:02:53.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-13 23:02:53.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.754][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-13 23:02:53.755][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-13 23:02:53.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.757][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.759][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-13 23:02:53.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-13 23:02:53.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.764][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-13 23:02:53.765][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-13 23:02:53.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.768][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.770][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-13 23:02:53.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-13 23:02:53.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.781][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-13 23:02:53.782][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-13 23:02:53.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.784][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.786][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-13 23:02:53.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-13 23:02:53.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.790][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-13 23:02:53.792][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-13 23:02:53.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.794][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.795][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-13 23:02:53.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-13 23:02:53.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.800][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-13 23:02:53.801][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-13 23:02:53.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.804][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.805][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-13 23:02:53.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-13 23:02:53.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.810][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-13 23:02:53.811][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-13 23:02:53.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.814][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.815][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-13 23:02:53.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-13 23:02:53.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.820][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-13 23:02:53.821][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-13 23:02:53.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.823][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.825][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-13 23:02:53.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-13 23:02:53.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.830][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-13 23:02:53.831][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-13 23:02:53.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.833][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.835][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-13 23:02:53.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-13 23:02:53.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.840][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-13 23:02:53.842][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-13 23:02:53.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.844][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.846][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-13 23:02:53.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-13 23:02:53.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.850][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-13 23:02:53.852][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-13 23:02:53.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.854][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.855][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-13 23:02:53.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-13 23:02:53.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.860][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-13 23:02:53.862][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-13 23:02:53.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.864][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.865][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-13 23:02:53.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-13 23:02:53.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.870][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-13 23:02:53.871][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-13 23:02:53.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.874][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.875][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-13 23:02:53.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-13 23:02:53.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.880][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:02:53.881][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:02:53.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.884][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.885][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:02:53.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:02:53.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.890][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:02:53.891][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:02:53.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.893][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.895][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:02:53.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:02:53.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.900][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-13 23:02:53.901][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-13 23:02:53.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.903][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.905][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-13 23:02:53.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-13 23:02:53.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.910][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-03-13 23:02:53.911][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-13 23:02:53.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.913][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.915][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-03-13 23:02:53.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-13 23:02:53.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:02:53.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:02:53.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:02:53.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:02:53.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:02:53.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:02:53.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.934][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-13 23:02:53.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-13 23:02:53.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.939][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-13 23:02:53.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-13 23:02:53.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.948][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-13 23:02:53.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-13 23:02:53.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.953][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-13 23:02:53.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-13 23:02:53.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.958][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-13 23:02:53.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-13 23:02:53.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.963][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-13 23:02:53.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-13 23:02:53.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-13 23:02:53.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-13 23:02:53.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.973][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-13 23:02:53.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-13 23:02:53.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.977][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-13 23:02:53.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-13 23:02:53.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.982][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-13 23:02:53.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-13 23:02:53.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.987][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-13 23:02:53.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-13 23:02:53.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.992][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-13 23:02:53.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-13 23:02:53.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:53.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:53.997][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-13 23:02:53.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-13 23:02:53.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.002][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-13 23:02:54.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-13 23:02:54.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.006][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-13 23:02:54.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-13 23:02:54.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.011][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-13 23:02:54.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-13 23:02:54.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.016][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-13 23:02:54.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-13 23:02:54.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.021][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-13 23:02:54.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-13 23:02:54.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.025][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-13 23:02:54.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-13 23:02:54.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.030][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-13 23:02:54.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-13 23:02:54.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.035][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-13 23:02:54.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-13 23:02:54.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.040][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:02:54.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:02:54.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.044][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:02:54.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:02:54.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.049][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:02:54.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:02:54.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.054][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-13 23:02:54.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-13 23:02:54.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.059][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-13 23:02:54.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-13 23:02:54.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.063][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-13 23:02:54.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-13 23:02:54.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.068][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-13 23:02:54.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-13 23:02:54.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.073][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-13 23:02:54.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-13 23:02:54.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.078][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-13 23:02:54.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-13 23:02:54.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.083][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-13 23:02:54.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-13 23:02:54.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.087][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-13 23:02:54.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-13 23:02:54.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.092][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-13 23:02:54.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-13 23:02:54.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.097][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-13 23:02:54.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-13 23:02:54.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.102][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-13 23:02:54.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-13 23:02:54.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.106][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-13 23:02:54.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-13 23:02:54.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.116][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-13 23:02:54.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-13 23:02:54.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.121][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-13 23:02:54.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-13 23:02:54.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.126][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-13 23:02:54.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-13 23:02:54.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.130][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:02:54.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:02:54.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.135][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:02:54.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:02:54.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.140][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:02:54.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:02:54.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.144][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-13 23:02:54.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-13 23:02:54.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.149][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-13 23:02:54.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-13 23:02:54.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.154][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-13 23:02:54.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-13 23:02:54.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.159][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-13 23:02:54.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-13 23:02:54.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.164][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-13 23:02:54.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-13 23:02:54.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.168][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-13 23:02:54.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-13 23:02:54.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.173][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-13 23:02:54.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-13 23:02:54.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.178][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-13 23:02:54.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-13 23:02:54.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.183][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-13 23:02:54.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-13 23:02:54.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.187][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-13 23:02:54.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-13 23:02:54.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.192][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-13 23:02:54.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-13 23:02:54.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.197][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-13 23:02:54.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-13 23:02:54.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.202][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-13 23:02:54.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-13 23:02:54.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.207][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-13 23:02:54.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-13 23:02:54.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.212][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:02:54.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:02:54.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.217][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:02:54.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:02:54.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.222][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:02:54.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:02:54.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.227][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:02:54.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:02:54.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.232][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:02:54.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:02:54.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.237][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-13 23:02:54.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-13 23:02:54.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.242][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-13 23:02:54.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-13 23:02:54.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:02:54.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:02:54.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.252][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-13 23:02:54.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-13 23:02:54.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:02:54.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:02:54.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.262][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:02:54.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:02:54.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:02:54.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:02:54.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:02:54.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:02:54.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:02:54.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:02:54.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:02:54.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:02:54.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-13 23:02:54.290][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2025-03-13 23:02:54.292][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-03-13 23:02:54.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-03-13 23:02:54.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.297][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-03-13 23:02:54.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-03-13 23:02:54.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.301][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-03-13 23:02:54.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-03-13 23:02:54.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-13 23:02:54.328][biodb::testThat]
biodb.INFO [2025-03-13 23:02:54.330][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-03-13 23:02:54.331][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-13 23:02:54.332][biodb::testThat]
biodb.TRACE[2025-03-13 23:02:54.335][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:02:54.337][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:02:54.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.339][ef$get] fields variable is a list.
biodb.DEBUG[2025-03-13 23:02:54.341][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "name".
biodb.TRACE[2025-03-13 23:02:54.386][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:02:54.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:02:54.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.391][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:02:54.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:02:54.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.396][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:02:54.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:02:54.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-13 23:02:54.403][function(conn, opt)] With value "1-Methylhistidine".
biodb.DEBUG[2025-03-13 23:02:54.405][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2025-03-13 23:02:54.406][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-03-13 23:02:54.407][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-03-13 23:02:54.409][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-13 23:02:54.411][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-13 23:02:54.413][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-13 23:02:54.414][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-13 23:02:54.416][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-13 23:02:54.417][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-13 23:02:54.419][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-13 23:02:54.420][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-13 23:02:54.421][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-13 23:02:54.423][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-03-13 23:02:54.424][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-03-13 23:02:54.426][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:02:54.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:02:54.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.431][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:02:54.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:02:54.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.435][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:02:54.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:02:54.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.440][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:02:54.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:02:54.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-13 23:02:54.445][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-13 23:02:54.446][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-03-13 23:02:54.447][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2025-03-13 23:02:54.484][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:02:54.485][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:02:54.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.488][ef$get] fields variable is a list.
biodb.DEBUG[2025-03-13 23:02:54.490][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "description".
biodb.TRACE[2025-03-13 23:02:54.542][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:02:54.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:02:54.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.547][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:02:54.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:02:54.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.552][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:02:54.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:02:54.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-13 23:02:54.559][function(conn, opt)] With value "1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.".
biodb.DEBUG[2025-03-13 23:02:54.603][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-03-13 23:02:54.604][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2025-03-13 23:02:54.606][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2025-03-13 23:02:54.618][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-13 23:02:54.620][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-13 23:02:54.622][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-13 23:02:54.625][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-13 23:02:54.626][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-13 23:02:54.645][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-13 23:02:54.646][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-13 23:02:54.647][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-13 23:02:54.649][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-13 23:02:54.650][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-03-13 23:02:54.651][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-03-13 23:02:54.653][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:02:54.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:02:54.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.658][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:02:54.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:02:54.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.663][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:02:54.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:02:54.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.668][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:02:54.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:02:54.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-13 23:02:54.673][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-13 23:02:54.674][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-03-13 23:02:54.675][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2025-03-13 23:02:54.713][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-13 23:02:54.715][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-13 23:02:54.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.717][ef$get] fields variable is a list.
biodb.DEBUG[2025-03-13 23:02:54.719][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "secondary.accessions".
biodb.TRACE[2025-03-13 23:02:54.752][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-13 23:02:54.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-13 23:02:54.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.757][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-13 23:02:54.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-13 23:02:54.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.762][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-13 23:02:54.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-13 23:02:54.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-13 23:02:54.770][function(conn, opt)] With value "HMDB00001".
biodb.DEBUG[2025-03-13 23:02:54.771][private$doSearchForEntries] fields NAMES = secondary.accessions
biodb.DEBUG[2025-03-13 23:02:54.772][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2025-03-13 23:02:54.774][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2025-03-13 23:02:54.776][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-13 23:02:54.778][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-13 23:02:54.779][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-13 23:02:54.781][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-13 23:02:54.782][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-13 23:02:54.784][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-13 23:02:54.785][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-13 23:02:54.786][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-13 23:02:54.788][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-13 23:02:54.789][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-03-13 23:02:54.790][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-03-13 23:02:54.792][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-13 23:02:54.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-13 23:02:54.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.797][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-13 23:02:54.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-13 23:02:54.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.802][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-13 23:02:54.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-13 23:02:54.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.807][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-13 23:02:54.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-13 23:02:54.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-13 23:02:54.812][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-13 23:02:54.813][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-03-13 23:02:54.814][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.INFO [2025-03-13 23:02:54.874][biodb::testThat]
biodb.INFO [2025-03-13 23:02:54.875][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-03-13 23:02:54.876][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-13 23:02:54.877][biodb::testThat]
biodb.TRACE[2025-03-13 23:02:54.893][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:02:54.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:02:54.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.898][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:02:54.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:02:54.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.908][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:02:54.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:02:54.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-13 23:02:54.924][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2025-03-13 23:02:54.926][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-03-13 23:02:54.927][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-03-13 23:02:54.929][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-13 23:02:54.931][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-13 23:02:54.933][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-13 23:02:54.935][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-13 23:02:54.936][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-13 23:02:54.937][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-13 23:02:54.939][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-13 23:02:54.940][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-13 23:02:54.941][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-13 23:02:54.943][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-03-13 23:02:54.944][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-03-13 23:02:54.946][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:02:54.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:02:54.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.951][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:02:54.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:02:54.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.955][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:02:54.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:02:54.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:54.960][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:02:54.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:02:54.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:54.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-13 23:02:54.965][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-13 23:02:54.966][private$doSearchForEntries] COUNT IDS = 1
biodb.INFO [2025-03-13 23:02:55.038][biodb::testThat]
biodb.INFO [2025-03-13 23:02:55.040][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-03-13 23:02:55.041][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-13 23:02:55.042][biodb::testThat]
biodb.TRACE[2025-03-13 23:02:55.067][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-13 23:02:55.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-13 23:02:55.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:55.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:55.072][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-13 23:02:55.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-13 23:02:55.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:55.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:55.077][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-03-13 23:02:55.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-03-13 23:02:55.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:55.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:55.082][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-03-13 23:02:55.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-03-13 23:02:55.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:55.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:55.140][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-13 23:02:55.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-13 23:02:55.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:55.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:55.145][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-13 23:02:55.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-13 23:02:55.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:55.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:55.150][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-03-13 23:02:55.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-03-13 23:02:55.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:55.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:02:55.155][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-03-13 23:02:55.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-03-13 23:02:55.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:02:55.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-13 23:02:55.178][biodb::testThat]
biodb.INFO [2025-03-13 23:02:55.181][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-03-13 23:02:55.183][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-13 23:02:55.185][biodb::testThat]
biodb.INFO [2025-03-13 23:02:55.213][biodb::testThat]
biodb.INFO [2025-03-13 23:02:55.214][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-03-13 23:02:55.215][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-13 23:02:55.217][biodb::testThat]
biodb.INFO [2025-03-13 23:02:55.228][biodb::testThat]
biodb.INFO [2025-03-13 23:02:55.230][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-03-13 23:02:55.231][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-13 23:02:55.232][biodb::testThat]
biodb.DEBUG[2025-03-13 23:02:55.236][function(conn, opt)] Trying to download "http://www.hmdb.ca/metabolites/HMDB0000001".
biodb.DEBUG[2025-03-13 23:02:56.101][getUrlContent] Use base::url() for downloading content of URL http://www.hmdb.ca/metabolites/HMDB0000001.
biodb.INFO [2025-03-13 23:03:06.436][biodb::testThat]
biodb.INFO [2025-03-13 23:03:06.438][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-03-13 23:03:06.439][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-13 23:03:06.440][biodb::testThat]
biodb.DEBUG[2025-03-13 23:03:06.568][getUrlContent] Use base::url() for downloading content of URL http://www.hmdb.ca/structures/HMDB0000001/image.png.
biodb.TRACE[2025-03-13 23:03:07.031][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:03:07.032][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:03:07.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:07.035][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:07.036][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:03:07.039][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:03:07.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:07.043][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:07.044][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-13 23:03:07.045][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-13 23:03:07.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:07.048][ef$get] fields variable is a list.
biodb.INFO [2025-03-13 23:03:07.050][biodb::testThat]
biodb.INFO [2025-03-13 23:03:07.051][biodb::testThat] Running test function  test.wrong.entry  (" Wrong entry gives NULL ").
biodb.INFO [2025-03-13 23:03:07.052][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-13 23:03:07.054][biodb::testThat]
biodb.DEBUG[2025-03-13 23:03:07.056][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2025-03-13 23:03:07.154][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-03-13 23:03:07.157][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-13 23:03:07.159][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-03-13 23:03:07.175][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2025-03-13 23:03:07.177][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-13 23:03:07.179][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-13 23:03:07.181][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-03-13 23:03:07.183][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-13 23:03:07.184][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-03-13 23:03:07.186][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-03-13 23:03:07.188][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-13 23:03:07.189][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:03:07.190][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:03:07.208][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:07.210][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:07.212][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:07.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-13 23:03:07.217][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-13 23:03:07.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-13 23:03:07.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:07.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:07.225][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-13 23:03:07.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-13 23:03:07.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:07.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:07.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:03:07.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:03:07.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:07.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:07.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:03:07.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:03:07.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:07.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:07.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:03:07.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:03:07.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:07.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:07.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:03:07.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:03:07.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:07.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:07.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:03:07.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:03:07.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:07.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:07.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:03:07.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:03:07.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:07.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-13 23:03:07.268][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2025-03-13 23:03:07.269][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2025-03-13 23:03:07.303][biodb::testThat]
biodb.INFO [2025-03-13 23:03:07.306][biodb::testThat] Running test function  test.wrong.entry.among.good.ones  (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2025-03-13 23:03:07.308][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-13 23:03:07.310][biodb::testThat]
biodb.DEBUG[2025-03-13 23:03:07.323][function(conn, opt)] IDS: [2]: "WRONGB, HMDB0000001"
biodb.DEBUG[2025-03-13 23:03:07.326][private$loadEntries] Creating entries from ids [1]: "WRONGB".
biodb.DEBUG[2025-03-13 23:03:07.328][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-03-13 23:03:07.331][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-13 23:03:07.334][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-03-13 23:03:07.338][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGB".
biodb.TRACE[2025-03-13 23:03:07.341][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-13 23:03:07.343][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-13 23:03:07.345][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-03-13 23:03:07.348][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-13 23:03:07.350][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-03-13 23:03:07.352][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-03-13 23:03:07.355][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-13 23:03:07.357][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:03:07.358][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:03:07.384][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:07.386][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:07.387][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:07.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-13 23:03:07.390][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-13 23:03:07.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-13 23:03:07.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:07.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:07.395][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-13 23:03:07.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-13 23:03:07.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:07.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:07.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:03:07.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:03:07.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:07.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:07.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:03:07.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:03:07.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:07.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:07.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:03:07.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:03:07.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:07.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:07.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:03:07.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:03:07.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:07.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:07.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:03:07.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:03:07.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:07.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:07.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:03:07.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:03:07.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:07.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-13 23:03:07.429][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2025-03-13 23:03:07.430][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2025-03-13 23:03:07.431][function(conn, opt)] Entries: [2]: "NULL, <environment>"
biodb.INFO [2025-03-13 23:03:07.473][biodb::testThat]
biodb.INFO [2025-03-13 23:03:07.475][biodb::testThat] Running test function  test.peak.table  (" The peak table is correct. ").
biodb.INFO [2025-03-13 23:03:07.477][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-13 23:03:07.478][biodb::testThat]
biodb.INFO [2025-03-13 23:03:07.509][biodb::testThat]
biodb.INFO [2025-03-13 23:03:07.511][biodb::testThat] Running test function  test.nb.entries  (" Nb entries is positive. ").
biodb.INFO [2025-03-13 23:03:07.512][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-13 23:03:07.513][biodb::testThat]
biodb.DEBUG[2025-03-13 23:03:07.516][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-13 23:03:07.518][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-13 23:03:07.520][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-13 23:03:07.522][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-13 23:03:07.523][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-13 23:03:07.525][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-13 23:03:07.526][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-13 23:03:07.527][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-13 23:03:07.529][private$doGetEntryIds] COUNT IDS = 2
biodb.INFO [2025-03-13 23:03:07.547][biodb::testThat]
biodb.INFO [2025-03-13 23:03:07.548][biodb::testThat] Running test function  test.entry.ids  (" We can get a list of entry ids. ").
biodb.INFO [2025-03-13 23:03:07.550][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-13 23:03:07.551][biodb::testThat]
biodb.DEBUG[2025-03-13 23:03:07.554][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-13 23:03:07.556][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-13 23:03:07.558][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-13 23:03:07.560][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-13 23:03:07.561][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-13 23:03:07.562][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-13 23:03:07.564][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-13 23:03:07.565][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-13 23:03:07.566][private$doGetEntryIds] COUNT IDS = 2
biodb.TRACE[2025-03-13 23:03:07.609][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:03:07.610][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:03:07.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:07.613][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:07.614][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:03:07.615][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:03:07.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:07.617][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:07.619][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-13 23:03:07.620][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-13 23:03:07.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:07.622][ef$get] fields variable is a list.
biodb.INFO [2025-03-13 23:03:07.623][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-03-13 23:03:07.625][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-03-13 23:03:07.632][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-03-13 23:03:07.633][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-03-13 23:03:07.635][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:03:07.636][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:03:07.637][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:07.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:07.639][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:07.640][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-03-13 23:03:07.646][biodb::testContext]
biodb.INFO [2025-03-13 23:03:07.647][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-13 23:03:07.648][biodb::testContext] Test context - Test retrieval of entries
biodb.INFO [2025-03-13 23:03:07.649][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-13 23:03:07.650][biodb::testContext]
biodb.INFO [2025-03-13 23:03:07.662][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.15.0.
biodb.DEBUG[2025-03-13 23:03:07.665][self$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.21-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2025-03-13 23:03:07.670][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-13 23:03:07.671][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-03-13 23:03:07.673][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-03-13 23:03:07.674][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:07.675][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:07.676][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:07.677][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-03-13 23:03:07.678][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-03-13 23:03:07.679][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:07.680][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:07.681][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:07.683][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-03-13 23:03:07.684][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-03-13 23:03:07.685][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:07.686][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:07.687][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:07.688][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-03-13 23:03:07.689][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-03-13 23:03:07.691][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-03-13 23:03:07.692][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:07.693][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:07.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:07.695][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-03-13 23:03:07.696][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-03-13 23:03:07.697][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-03-13 23:03:07.698][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:07.699][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:07.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:07.702][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-03-13 23:03:07.703][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-03-13 23:03:07.704][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:07.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:07.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:07.707][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-03-13 23:03:07.708][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-03-13 23:03:07.710][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-03-13 23:03:07.712][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:07.713][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:07.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:07.717][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-03-13 23:03:07.719][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-03-13 23:03:07.720][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:07.722][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:07.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:07.726][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-03-13 23:03:07.728][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-03-13 23:03:07.730][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-03-13 23:03:07.731][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:07.733][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:07.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:07.737][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-03-13 23:03:07.738][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-03-13 23:03:07.740][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-03-13 23:03:07.742][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-03-13 23:03:07.744][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-03-13 23:03:07.746][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-03-13 23:03:07.748][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:07.749][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:07.751][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:07.753][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-03-13 23:03:07.755][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-03-13 23:03:07.757][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:07.758][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:07.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:07.760][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-03-13 23:03:07.762][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-03-13 23:03:07.763][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:07.764][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:07.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:07.766][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-03-13 23:03:07.767][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-03-13 23:03:07.768][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:07.770][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:07.771][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:07.772][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-03-13 23:03:07.774][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-03-13 23:03:07.776][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:07.777][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:07.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:07.781][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-03-13 23:03:07.783][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-03-13 23:03:07.784][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:07.786][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:07.788][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:07.790][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-03-13 23:03:07.791][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-03-13 23:03:07.796][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-03-13 23:03:07.798][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:07.799][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:07.800][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:07.801][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-03-13 23:03:07.802][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-03-13 23:03:07.804][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-03-13 23:03:07.805][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:07.806][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:07.807][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:07.809][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-03-13 23:03:07.811][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-13 23:03:07.812][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-03-13 23:03:07.813][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-13 23:03:07.815][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-13 23:03:07.816][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-13 23:03:07.817][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-13 23:03:07.824][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-13 23:03:07.825][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-13 23:03:07.827][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-13 23:03:07.828][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-13 23:03:07.830][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-13 23:03:07.831][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-03-13 23:03:07.832][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-13 23:03:07.833][self$setPropertyValue]
biodb.DEBUG[2025-03-13 23:03:07.835][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-13 23:03:07.836][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-13 23:03:07.836][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-13 23:03:07.836][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-13 23:03:07.836][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-13 23:03:07.836][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-13 23:03:07.837][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-13 23:03:07.839][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-13 23:03:07.840][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-13 23:03:07.841][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-13 23:03:07.842][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-13 23:03:07.843][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-13 23:03:07.844][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-13 23:03:07.846][self$setPropertyValue]
biodb.DEBUG[2025-03-13 23:03:07.847][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-13 23:03:07.848][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-13 23:03:07.849][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-13 23:03:07.851][self$setPropertyValue]
biodb.DEBUG[2025-03-13 23:03:07.852][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-03-13 23:03:07.854][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-13 23:03:07.855][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-03-13 23:03:07.857][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-13 23:03:07.858][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-13 23:03:07.859][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-13 23:03:07.861][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-13 23:03:07.862][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-13 23:03:07.863][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-13 23:03:07.864][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-13 23:03:07.866][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-13 23:03:07.867][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-13 23:03:07.868][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-03-13 23:03:07.870][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-13 23:03:07.871][self$setPropertyValue]
biodb.DEBUG[2025-03-13 23:03:07.872][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-13 23:03:07.873][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-13 23:03:07.873][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-13 23:03:07.873][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-13 23:03:07.873][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-13 23:03:07.873][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-13 23:03:07.875][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-13 23:03:07.876][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-13 23:03:07.877][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-13 23:03:07.878][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-13 23:03:07.880][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-13 23:03:07.881][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-13 23:03:07.882][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-13 23:03:07.883][self$setPropertyValue]
biodb.DEBUG[2025-03-13 23:03:07.885][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-13 23:03:07.886][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-13 23:03:07.887][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-13 23:03:07.888][self$setPropertyValue]
biodb.DEBUG[2025-03-13 23:03:07.890][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-03-13 23:03:07.892][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-13 23:03:07.893][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-03-13 23:03:07.894][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-13 23:03:07.895][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-13 23:03:07.897][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-13 23:03:07.898][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-13 23:03:07.899][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-13 23:03:07.901][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-13 23:03:07.902][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-13 23:03:07.903][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-13 23:03:07.904][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-13 23:03:07.906][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-03-13 23:03:07.907][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-13 23:03:07.908][self$setPropertyValue]
biodb.DEBUG[2025-03-13 23:03:07.910][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-13 23:03:07.911][self$setPropertyValue]
biodb.DEBUG[2025-03-13 23:03:07.912][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-13 23:03:07.913][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-13 23:03:07.915][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-13 23:03:07.916][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-13 23:03:07.917][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-13 23:03:07.918][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-13 23:03:07.919][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-13 23:03:07.921][self$setPropertyValue]
biodb.DEBUG[2025-03-13 23:03:07.922][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-13 23:03:07.923][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-13 23:03:07.924][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-13 23:03:07.926][self$setPropertyValue]
biodb.DEBUG[2025-03-13 23:03:07.927][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-03-13 23:03:07.929][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-13 23:03:07.931][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-03-13 23:03:07.933][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-13 23:03:07.935][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-13 23:03:07.937][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-13 23:03:07.939][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-13 23:03:07.941][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-13 23:03:07.942][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-13 23:03:07.944][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-13 23:03:07.946][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-13 23:03:07.948][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-13 23:03:07.950][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-03-13 23:03:07.952][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-13 23:03:07.954][self$setPropertyValue]
biodb.DEBUG[2025-03-13 23:03:07.955][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-13 23:03:07.957][self$setPropertyValue]
biodb.DEBUG[2025-03-13 23:03:07.959][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-13 23:03:07.961][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-13 23:03:07.963][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-13 23:03:07.964][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-13 23:03:07.966][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-13 23:03:07.968][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-13 23:03:07.970][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-13 23:03:07.979][self$setPropertyValue]
biodb.DEBUG[2025-03-13 23:03:07.981][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-13 23:03:07.983][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-13 23:03:07.985][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-13 23:03:07.987][self$setPropertyValue]
biodb.DEBUG[2025-03-13 23:03:07.990][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-13 23:03:07.991][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:07.993][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:07.995][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:07.997][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:07.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:08.000][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:08.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:08.004][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:08.005][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:08.007][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:08.009][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:08.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:08.013][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:08.014][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:08.016][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:08.018][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:08.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:08.021][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:08.023][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:08.025][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:08.026][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:08.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:08.028][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:08.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:08.030][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:08.031][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:08.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:08.034][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:08.035][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:08.036][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:08.037][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:08.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:08.039][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:08.040][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:08.042][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:08.043][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:08.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:08.045][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:08.046][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:08.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:08.048][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:08.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:08.051][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:08.052][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:08.053][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:08.054][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:08.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:08.056][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:08.057][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:08.058][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:08.059][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:08.061][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:08.062][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:08.063][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:08.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:08.065][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:08.066][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:08.067][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:08.068][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:08.069][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:08.071][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:08.072][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:08.073][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:08.074][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:08.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:08.076][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:08.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:08.078][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:08.080][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:08.081][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:08.082][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:08.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:08.084][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:08.085][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:08.086][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:08.087][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:08.089][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:08.090][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:08.091][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:08.092][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:08.093][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:08.094][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:08.095][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:08.096][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:08.098][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:08.099][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:08.100][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:08.101][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-03-13 23:03:08.103][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-03-13 23:03:08.105][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-03-13 23:03:08.106][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-03-13 23:03:08.108][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-03-13 23:03:08.109][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-13 23:03:08.111][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-03-13 23:03:08.113][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-03-13 23:03:08.114][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-03-13 23:03:08.116][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-13 23:03:08.117][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-13 23:03:08.119][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-03-13 23:03:08.121][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-03-13 23:03:08.122][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-03-13 23:03:08.129][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-03-13 23:03:08.131][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-13 23:03:08.133][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-03-13 23:03:08.135][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-03-13 23:03:08.136][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-03-13 23:03:08.138][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-03-13 23:03:08.139][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-03-13 23:03:08.141][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-03-13 23:03:08.143][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-03-13 23:03:08.144][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-03-13 23:03:08.146][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-03-13 23:03:08.147][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-03-13 23:03:08.149][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-03-13 23:03:08.150][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-03-13 23:03:08.152][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-03-13 23:03:08.154][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-03-13 23:03:08.155][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-03-13 23:03:08.157][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-03-13 23:03:08.158][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-03-13 23:03:08.160][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-03-13 23:03:08.161][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-03-13 23:03:08.163][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-03-13 23:03:08.165][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-03-13 23:03:08.166][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-03-13 23:03:08.168][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-03-13 23:03:08.169][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-03-13 23:03:08.171][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-03-13 23:03:08.173][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-03-13 23:03:08.174][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-03-13 23:03:08.176][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-03-13 23:03:08.177][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-03-13 23:03:08.179][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-03-13 23:03:08.181][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-03-13 23:03:08.182][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-03-13 23:03:08.184][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-03-13 23:03:08.185][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-03-13 23:03:08.187][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-03-13 23:03:08.189][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-03-13 23:03:08.190][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-03-13 23:03:08.192][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-03-13 23:03:08.193][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-03-13 23:03:08.195][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-03-13 23:03:08.196][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-03-13 23:03:08.198][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-03-13 23:03:08.200][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-03-13 23:03:08.201][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-03-13 23:03:08.203][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-03-13 23:03:08.204][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-03-13 23:03:08.206][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-03-13 23:03:08.208][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-03-13 23:03:08.209][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-03-13 23:03:08.211][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-03-13 23:03:08.212][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-03-13 23:03:08.214][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-03-13 23:03:08.216][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-03-13 23:03:08.217][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-03-13 23:03:08.219][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-03-13 23:03:08.220][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-03-13 23:03:08.222][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-03-13 23:03:08.224][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-03-13 23:03:08.225][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-03-13 23:03:08.227][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-03-13 23:03:08.229][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-03-13 23:03:08.231][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-03-13 23:03:08.233][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-03-13 23:03:08.235][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-03-13 23:03:08.236][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-03-13 23:03:08.238][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-03-13 23:03:08.239][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-03-13 23:03:08.241][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-03-13 23:03:08.243][initialize] This is biodb version 1.15.0.
biodb.DEBUG[2025-03-13 23:03:08.245][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-13 23:03:08.246][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:08.253][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:08.254][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:08.256][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:08.257][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:08.258][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:03:08.259][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:03:08.260][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:08.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:08.263][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:08.264][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:08.265][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:08.266][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:03:08.267][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:03:08.268][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:08.269][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:08.270][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:08.271][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:08.272][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:08.273][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:03:08.275][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:03:08.276][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:08.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:08.278][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:08.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:08.280][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:08.281][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:03:08.282][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:03:08.283][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:08.284][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:08.285][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:08.287][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:08.288][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:08.289][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:03:08.290][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:03:08.291][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:08.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:08.293][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:08.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:08.295][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:08.296][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:03:08.297][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:03:08.298][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:08.300][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:08.301][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:08.302][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:08.303][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:08.304][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:03:08.305][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:03:08.306][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:08.307][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:08.308][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:08.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:08.310][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:08.311][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:03:08.312][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:03:08.314][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:08.315][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:08.316][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:08.317][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:08.318][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:08.319][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:03:08.320][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:03:08.321][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:08.322][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:08.323][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:08.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:08.326][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:08.327][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:03:08.328][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:03:08.329][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:08.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:08.331][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:08.332][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:08.333][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:08.334][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:03:08.335][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:03:08.336][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:08.337][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:08.338][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:08.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:08.341][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:08.342][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:03:08.343][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:03:08.344][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:08.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:08.346][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:08.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:08.348][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:08.349][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:03:08.350][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:03:08.351][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:08.353][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:08.354][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:08.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:08.356][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:08.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:03:08.358][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:03:08.359][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:08.360][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:08.361][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:08.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:08.364][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:08.365][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:03:08.366][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:03:08.367][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:08.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:08.369][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:08.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:08.371][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:08.372][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:03:08.373][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:03:08.374][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:08.375][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:08.382][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:08.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:08.384][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:08.385][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:03:08.387][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:03:08.388][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:08.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:08.390][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:08.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:08.394][biodb$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.21-bioc/R/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-03-13 23:03:08.396][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-03-13 23:03:08.398][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-13 23:03:08.399][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-03-13 23:03:08.400][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-13 23:03:08.401][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-13 23:03:08.403][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-03-13 23:03:08.404][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-03-13 23:03:08.405][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-03-13 23:03:08.406][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-13 23:03:08.407][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-03-13 23:03:08.409][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-13 23:03:08.410][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-13 23:03:08.411][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-03-13 23:03:08.412][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-13 23:03:08.413][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-03-13 23:03:08.413][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-03-13 23:03:08.413][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-03-13 23:03:08.413][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-03-13 23:03:08.413][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-03-13 23:03:08.413][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-03-13 23:03:08.413][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-03-13 23:03:08.413][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-03-13 23:03:08.413][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-03-13 23:03:08.413][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-03-13 23:03:08.413][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-03-13 23:03:08.413][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-03-13 23:03:08.413][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-03-13 23:03:08.413][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-03-13 23:03:08.413][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-03-13 23:03:08.413][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-03-13 23:03:08.413][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-03-13 23:03:08.413][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-03-13 23:03:08.415][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-03-13 23:03:08.416][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-13 23:03:08.416][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-03-13 23:03:08.416][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-03-13 23:03:08.417][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-03-13 23:03:08.419][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-13 23:03:08.420][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-13 23:03:08.421][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-13 23:03:08.422][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-13 23:03:08.423][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-13 23:03:08.424][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-13 23:03:08.425][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-03-13 23:03:08.425][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-03-13 23:03:08.427][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-13 23:03:08.428][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-13 23:03:08.429][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-03-13 23:03:08.430][self$setPropertyValue]
biodb.DEBUG[2025-03-13 23:03:08.431][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-03-13 23:03:08.433][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-13 23:03:08.435][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-13 23:03:08.437][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-13 23:03:08.438][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-13 23:03:08.442][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-03-13 23:03:08.443][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-03-13 23:03:08.444][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-03-13 23:03:08.446][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-13 23:03:08.448][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-13 23:03:08.449][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-13 23:03:08.450][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-03-13 23:03:08.452][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-03-13 23:03:08.453][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-03-13 23:03:08.453][self$setPropertyValue] Setting property "urls" to "E:/biocbuild/bbs-3.21-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-03-13 23:03:08.454][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-13 23:03:08.455][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-13 23:03:08.456][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-03-13 23:03:08.457][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-03-13 23:03:08.458][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-03-13 23:03:08.460][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-13 23:03:08.462][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-13 23:03:08.463][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-13 23:03:08.465][private$addConnectorRules] Create new rule for URL "E:/biocbuild/bbs-3.21-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-13 23:03:08.466][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-13 23:03:08.467][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-03-13 23:03:08.469][biodb::testThat]
biodb.INFO [2025-03-13 23:03:08.471][biodb::testThat] Running test function  test.hmdbmetabolite.nbentries  (" HMDB metabolite returns enough entries. ").
biodb.INFO [2025-03-13 23:03:08.472][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-13 23:03:08.473][biodb::testThat]
biodb.DEBUG[2025-03-13 23:03:08.478][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-13 23:03:08.480][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-13 23:03:08.482][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-13 23:03:08.484][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-13 23:03:08.485][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-13 23:03:08.486][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-13 23:03:08.488][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-13 23:03:08.489][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-13 23:03:08.490][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-13 23:03:08.494][conn$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2025-03-13 23:03:08.511][biodb::testThat]
biodb.INFO [2025-03-13 23:03:08.513][biodb::testThat] Running test function  test.old.accession  (" We can retrieve entries using old accession numbers. ").
biodb.INFO [2025-03-13 23:03:08.514][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-13 23:03:08.515][biodb::testThat]
biodb.DEBUG[2025-03-13 23:03:08.518][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2025-03-13 23:03:08.519][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-03-13 23:03:08.521][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-13 23:03:08.523][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-03-13 23:03:08.530][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2025-03-13 23:03:08.532][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-13 23:03:08.548][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-03-13 23:03:08.550][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-03-13 23:03:08.551][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-03-13 23:03:08.553][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-03-13 23:03:08.555][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-13 23:03:08.556][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:03:08.557][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:03:08.564][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:08.566][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:08.567][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:08.568][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-13 23:03:08.571][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:03:08.573][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:03:08.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.575][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:03:08.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:03:08.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.581][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-13 23:03:08.583][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-13 23:03:08.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.585][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.586][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-13 23:03:08.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-13 23:03:08.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.591][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-13 23:03:08.593][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-13 23:03:08.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.595][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.596][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-13 23:03:08.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-13 23:03:08.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.601][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-13 23:03:08.603][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-13 23:03:08.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.605][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.606][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-13 23:03:08.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-13 23:03:08.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.611][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-13 23:03:08.613][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-13 23:03:08.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.615][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.616][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-13 23:03:08.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-13 23:03:08.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.623][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-13 23:03:08.625][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-13 23:03:08.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.627][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.629][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-13 23:03:08.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-13 23:03:08.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.633][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-13 23:03:08.635][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-13 23:03:08.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.638][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.639][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-13 23:03:08.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-13 23:03:08.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.644][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-13 23:03:08.646][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-13 23:03:08.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.648][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.650][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-13 23:03:08.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-13 23:03:08.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.654][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-13 23:03:08.656][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-13 23:03:08.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.658][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.660][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-13 23:03:08.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-13 23:03:08.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.665][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-13 23:03:08.666][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-13 23:03:08.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.668][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.670][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-13 23:03:08.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-13 23:03:08.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.675][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-13 23:03:08.676][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-13 23:03:08.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.684][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.686][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-13 23:03:08.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-13 23:03:08.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.691][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-13 23:03:08.692][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-13 23:03:08.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.695][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.696][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-13 23:03:08.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-13 23:03:08.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.701][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-13 23:03:08.702][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-13 23:03:08.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.705][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.706][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-13 23:03:08.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-13 23:03:08.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.711][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-13 23:03:08.712][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-13 23:03:08.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.714][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.716][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-13 23:03:08.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-13 23:03:08.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.721][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:03:08.722][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:03:08.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.724][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.726][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:03:08.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:03:08.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.731][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:03:08.732][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:03:08.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.734][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.736][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:03:08.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:03:08.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.741][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-13 23:03:08.742][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-13 23:03:08.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.744][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.746][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-13 23:03:08.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-13 23:03:08.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.751][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-03-13 23:03:08.752][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-13 23:03:08.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.754][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.756][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-03-13 23:03:08.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-13 23:03:08.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:03:08.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:03:08.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:03:08.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:03:08.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:03:08.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:03:08.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.775][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-13 23:03:08.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-13 23:03:08.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.780][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-13 23:03:08.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-13 23:03:08.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.785][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-13 23:03:08.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-13 23:03:08.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.789][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-13 23:03:08.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-13 23:03:08.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.794][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-13 23:03:08.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-13 23:03:08.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.799][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-13 23:03:08.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-13 23:03:08.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.804][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-13 23:03:08.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-13 23:03:08.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.809][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-13 23:03:08.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-13 23:03:08.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.819][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-13 23:03:08.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-13 23:03:08.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.824][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-13 23:03:08.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-13 23:03:08.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.829][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-13 23:03:08.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-13 23:03:08.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.834][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-13 23:03:08.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-13 23:03:08.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.840][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-13 23:03:08.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-13 23:03:08.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.848][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-13 23:03:08.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-13 23:03:08.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.856][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-13 23:03:08.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-13 23:03:08.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.864][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-13 23:03:08.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-13 23:03:08.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.872][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-13 23:03:08.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-13 23:03:08.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.880][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-13 23:03:08.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-13 23:03:08.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.888][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-13 23:03:08.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-13 23:03:08.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.896][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-13 23:03:08.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-13 23:03:08.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.904][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-13 23:03:08.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-13 23:03:08.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.912][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:03:08.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:03:08.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.918][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:03:08.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:03:08.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.923][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:03:08.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:03:08.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.928][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-13 23:03:08.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-13 23:03:08.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.934][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-13 23:03:08.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-13 23:03:08.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.939][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-13 23:03:08.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-13 23:03:08.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.944][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-13 23:03:08.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-13 23:03:08.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.949][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-13 23:03:08.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-13 23:03:08.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.953][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-13 23:03:08.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-13 23:03:08.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.958][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-13 23:03:08.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-13 23:03:08.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.963][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-13 23:03:08.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-13 23:03:08.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.968][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-13 23:03:08.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-13 23:03:08.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.978][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-13 23:03:08.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-13 23:03:08.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.983][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-13 23:03:08.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-13 23:03:08.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.988][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-13 23:03:08.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-13 23:03:08.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.993][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-13 23:03:08.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-13 23:03:08.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:08.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:08.998][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-13 23:03:08.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-13 23:03:09.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:09.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:09.003][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-13 23:03:09.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-13 23:03:09.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:09.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:09.008][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:03:09.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:03:09.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:09.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:09.012][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:03:09.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:03:09.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:09.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:09.017][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:03:09.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:03:09.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:09.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:09.022][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-13 23:03:09.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-13 23:03:09.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:09.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:09.027][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-13 23:03:09.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-13 23:03:09.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:09.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:09.032][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-13 23:03:09.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-13 23:03:09.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:09.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:09.037][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-13 23:03:09.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-13 23:03:09.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:09.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:09.041][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-13 23:03:09.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-13 23:03:09.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:09.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:09.046][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-13 23:03:09.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-13 23:03:09.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:09.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:09.051][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-13 23:03:09.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-13 23:03:09.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:09.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:09.056][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-13 23:03:09.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-13 23:03:09.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:09.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:09.061][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-13 23:03:09.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-13 23:03:09.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:09.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:09.065][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-13 23:03:09.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-13 23:03:09.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:09.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:09.070][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-13 23:03:09.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-13 23:03:09.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:09.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:09.075][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-13 23:03:09.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-13 23:03:09.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:09.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:09.080][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-13 23:03:09.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-13 23:03:09.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:09.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:09.085][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-13 23:03:09.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-13 23:03:09.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:09.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:09.091][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:03:09.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:03:09.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:09.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:09.095][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:03:09.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:03:09.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:09.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:09.100][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:03:09.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:03:09.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:09.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:09.111][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:03:09.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:03:09.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:09.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:09.116][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:03:09.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:03:09.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:09.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:09.121][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-13 23:03:09.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-13 23:03:09.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:09.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:09.129][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-13 23:03:09.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-13 23:03:09.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:09.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:09.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:03:09.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:03:09.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:09.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:09.144][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-13 23:03:09.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-13 23:03:09.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:09.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:09.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:03:09.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:03:09.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:09.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:09.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:03:09.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:03:09.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:09.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:09.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:03:09.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:03:09.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:09.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:09.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:03:09.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:03:09.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:09.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:09.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:03:09.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:03:09.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:09.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:09.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:03:09.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:03:09.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:09.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-13 23:03:09.184][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2025-03-13 23:03:09.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:03:09.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:03:09.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:09.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:09.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:03:09.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:03:09.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:09.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:09.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:03:09.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:03:09.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:09.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-13 23:03:09.209][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-03-13 23:03:09.210][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-03-13 23:03:09.212][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-03-13 23:03:09.213][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-03-13 23:03:09.214][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:03:09.215][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:03:09.216][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:09.218][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:09.219][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:09.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-03-13 23:03:09.226][biodb::testContext]
biodb.INFO [2025-03-13 23:03:09.227][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-13 23:03:09.229][biodb::testContext] Test context - Test search of entries
biodb.INFO [2025-03-13 23:03:09.230][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-13 23:03:09.232][biodb::testContext]
biodb.INFO [2025-03-13 23:03:09.240][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.15.0.
biodb.DEBUG[2025-03-13 23:03:09.242][self$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.21-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2025-03-13 23:03:09.248][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-13 23:03:09.249][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-03-13 23:03:09.251][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-03-13 23:03:09.252][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:09.253][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:09.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:09.255][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-03-13 23:03:09.256][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-03-13 23:03:09.257][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:09.258][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:09.260][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:09.261][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-03-13 23:03:09.262][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-03-13 23:03:09.263][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:09.264][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:09.271][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:09.273][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-03-13 23:03:09.274][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-03-13 23:03:09.275][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-03-13 23:03:09.276][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:09.277][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:09.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:09.280][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-03-13 23:03:09.281][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-03-13 23:03:09.282][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-03-13 23:03:09.283][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:09.284][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:09.285][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:09.286][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-03-13 23:03:09.288][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-03-13 23:03:09.289][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:09.290][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:09.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:09.292][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-03-13 23:03:09.293][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-03-13 23:03:09.295][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-03-13 23:03:09.296][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:09.297][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:09.298][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:09.299][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-03-13 23:03:09.300][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-03-13 23:03:09.301][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:09.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:09.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:09.305][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-03-13 23:03:09.306][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-03-13 23:03:09.307][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-03-13 23:03:09.308][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:09.309][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:09.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:09.312][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-03-13 23:03:09.313][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-03-13 23:03:09.314][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-03-13 23:03:09.315][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-03-13 23:03:09.316][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-03-13 23:03:09.317][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-03-13 23:03:09.319][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:09.320][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:09.321][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:09.322][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-03-13 23:03:09.323][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-03-13 23:03:09.324][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:09.325][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:09.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:09.328][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-03-13 23:03:09.329][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-03-13 23:03:09.330][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:09.331][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:09.332][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:09.333][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-03-13 23:03:09.334][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-03-13 23:03:09.336][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:09.337][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:09.338][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:09.339][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-03-13 23:03:09.340][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-03-13 23:03:09.341][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:09.342][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:09.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:09.344][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-03-13 23:03:09.346][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-03-13 23:03:09.347][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:09.348][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:09.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:09.350][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-03-13 23:03:09.351][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-03-13 23:03:09.355][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-03-13 23:03:09.356][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:09.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:09.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:09.359][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-03-13 23:03:09.361][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-03-13 23:03:09.362][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-03-13 23:03:09.363][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:09.364][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:09.365][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:09.367][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-03-13 23:03:09.369][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-13 23:03:09.370][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-03-13 23:03:09.371][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-13 23:03:09.372][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-13 23:03:09.374][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-13 23:03:09.375][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-13 23:03:09.376][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-13 23:03:09.377][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-13 23:03:09.379][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-13 23:03:09.380][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-13 23:03:09.381][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-13 23:03:09.382][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-03-13 23:03:09.384][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-13 23:03:09.385][self$setPropertyValue]
biodb.DEBUG[2025-03-13 23:03:09.386][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-13 23:03:09.387][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-13 23:03:09.387][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-13 23:03:09.387][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-13 23:03:09.387][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-13 23:03:09.387][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-13 23:03:09.389][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-13 23:03:09.390][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-13 23:03:09.391][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-13 23:03:09.392][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-13 23:03:09.393][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-13 23:03:09.394][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-13 23:03:09.401][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-13 23:03:09.402][self$setPropertyValue]
biodb.DEBUG[2025-03-13 23:03:09.404][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-13 23:03:09.405][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-13 23:03:09.406][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-13 23:03:09.407][self$setPropertyValue]
biodb.DEBUG[2025-03-13 23:03:09.409][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-03-13 23:03:09.410][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-13 23:03:09.412][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-03-13 23:03:09.413][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-13 23:03:09.414][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-13 23:03:09.415][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-13 23:03:09.417][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-13 23:03:09.418][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-13 23:03:09.419][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-13 23:03:09.420][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-13 23:03:09.421][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-13 23:03:09.423][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-13 23:03:09.424][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-03-13 23:03:09.425][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-13 23:03:09.426][self$setPropertyValue]
biodb.DEBUG[2025-03-13 23:03:09.428][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-13 23:03:09.429][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-13 23:03:09.429][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-13 23:03:09.429][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-13 23:03:09.429][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-13 23:03:09.429][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-13 23:03:09.430][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-13 23:03:09.431][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-13 23:03:09.432][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-13 23:03:09.434][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-13 23:03:09.435][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-13 23:03:09.436][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-13 23:03:09.437][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-13 23:03:09.438][self$setPropertyValue]
biodb.DEBUG[2025-03-13 23:03:09.440][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-13 23:03:09.441][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-13 23:03:09.442][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-13 23:03:09.443][self$setPropertyValue]
biodb.DEBUG[2025-03-13 23:03:09.445][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-03-13 23:03:09.447][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-13 23:03:09.448][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-03-13 23:03:09.450][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-13 23:03:09.452][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-13 23:03:09.454][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-13 23:03:09.456][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-13 23:03:09.458][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-13 23:03:09.460][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-13 23:03:09.462][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-13 23:03:09.464][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-13 23:03:09.466][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-13 23:03:09.468][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-03-13 23:03:09.470][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-13 23:03:09.472][self$setPropertyValue]
biodb.DEBUG[2025-03-13 23:03:09.474][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-13 23:03:09.476][self$setPropertyValue]
biodb.DEBUG[2025-03-13 23:03:09.478][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-13 23:03:09.479][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-13 23:03:09.481][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-13 23:03:09.483][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-13 23:03:09.485][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-13 23:03:09.487][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-13 23:03:09.489][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-13 23:03:09.491][self$setPropertyValue]
biodb.DEBUG[2025-03-13 23:03:09.492][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-13 23:03:09.494][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-13 23:03:09.496][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-13 23:03:09.498][self$setPropertyValue]
biodb.DEBUG[2025-03-13 23:03:09.500][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-03-13 23:03:09.502][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-13 23:03:09.503][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-03-13 23:03:09.504][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-13 23:03:09.506][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-13 23:03:09.507][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-13 23:03:09.508][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-13 23:03:09.509][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-13 23:03:09.511][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-13 23:03:09.512][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-13 23:03:09.513][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-13 23:03:09.514][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-13 23:03:09.515][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-03-13 23:03:09.517][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-13 23:03:09.518][self$setPropertyValue]
biodb.DEBUG[2025-03-13 23:03:09.519][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-13 23:03:09.520][self$setPropertyValue]
biodb.DEBUG[2025-03-13 23:03:09.522][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-13 23:03:09.523][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-13 23:03:09.524][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-13 23:03:09.525][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-13 23:03:09.526][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-13 23:03:09.528][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-13 23:03:09.530][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-13 23:03:09.532][self$setPropertyValue]
biodb.DEBUG[2025-03-13 23:03:09.534][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-13 23:03:09.535][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-13 23:03:09.537][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-13 23:03:09.539][self$setPropertyValue]
biodb.DEBUG[2025-03-13 23:03:09.542][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-13 23:03:09.543][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:09.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:09.547][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:09.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:09.551][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:09.553][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:09.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:09.562][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:09.564][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:09.565][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:09.566][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:09.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:09.568][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:09.569][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:09.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:09.572][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:09.573][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:09.574][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:09.575][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:09.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:09.577][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:09.578][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:09.579][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:09.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:09.581][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:09.583][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:09.584][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:09.585][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:09.586][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:09.587][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:09.588][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:09.589][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:09.590][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:09.591][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:09.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:09.594][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:09.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:09.596][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:09.597][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:09.598][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:09.599][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:09.600][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:09.601][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:09.602][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:09.604][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:09.605][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:09.606][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:09.607][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:09.608][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:09.609][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:09.610][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:09.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:09.613][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:09.614][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:09.615][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:09.616][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:09.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:09.618][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:09.619][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:09.620][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:09.621][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:09.622][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:09.624][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:09.625][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:09.626][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:09.627][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:09.628][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:09.629][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:09.630][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:09.631][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:09.632][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:09.633][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:09.635][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:09.636][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:09.637][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:09.638][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:09.639][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:09.640][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:09.641][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:09.642][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:09.643][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:09.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:09.646][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:09.647][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:09.648][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:09.649][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:09.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:09.651][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-03-13 23:03:09.653][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-03-13 23:03:09.655][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-03-13 23:03:09.656][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-03-13 23:03:09.658][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-03-13 23:03:09.660][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-13 23:03:09.661][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-03-13 23:03:09.663][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-03-13 23:03:09.664][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-03-13 23:03:09.666][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-13 23:03:09.668][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-13 23:03:09.669][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-03-13 23:03:09.671][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-03-13 23:03:09.672][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-03-13 23:03:09.674][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-03-13 23:03:09.676][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-13 23:03:09.677][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-03-13 23:03:09.679][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-03-13 23:03:09.680][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-03-13 23:03:09.687][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-03-13 23:03:09.689][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-03-13 23:03:09.691][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-03-13 23:03:09.692][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-03-13 23:03:09.694][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-03-13 23:03:09.695][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-03-13 23:03:09.697][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-03-13 23:03:09.699][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-03-13 23:03:09.700][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-03-13 23:03:09.702][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-03-13 23:03:09.703][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-03-13 23:03:09.705][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-03-13 23:03:09.706][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-03-13 23:03:09.708][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-03-13 23:03:09.710][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-03-13 23:03:09.711][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-03-13 23:03:09.713][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-03-13 23:03:09.714][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-03-13 23:03:09.716][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-03-13 23:03:09.718][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-03-13 23:03:09.719][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-03-13 23:03:09.721][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-03-13 23:03:09.722][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-03-13 23:03:09.724][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-03-13 23:03:09.726][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-03-13 23:03:09.727][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-03-13 23:03:09.729][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-03-13 23:03:09.730][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-03-13 23:03:09.732][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-03-13 23:03:09.734][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-03-13 23:03:09.735][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-03-13 23:03:09.737][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-03-13 23:03:09.738][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-03-13 23:03:09.740][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-03-13 23:03:09.741][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-03-13 23:03:09.743][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-03-13 23:03:09.745][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-03-13 23:03:09.746][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-03-13 23:03:09.748][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-03-13 23:03:09.749][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-03-13 23:03:09.751][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-03-13 23:03:09.753][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-03-13 23:03:09.754][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-03-13 23:03:09.756][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-03-13 23:03:09.758][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-03-13 23:03:09.759][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-03-13 23:03:09.761][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-03-13 23:03:09.762][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-03-13 23:03:09.764][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-03-13 23:03:09.766][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-03-13 23:03:09.767][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-03-13 23:03:09.769][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-03-13 23:03:09.770][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-03-13 23:03:09.772][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-03-13 23:03:09.773][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-03-13 23:03:09.775][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-03-13 23:03:09.777][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-03-13 23:03:09.778][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-03-13 23:03:09.780][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-03-13 23:03:09.782][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-03-13 23:03:09.783][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-03-13 23:03:09.785][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-03-13 23:03:09.786][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-03-13 23:03:09.788][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-03-13 23:03:09.790][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-03-13 23:03:09.792][initialize] This is biodb version 1.15.0.
biodb.DEBUG[2025-03-13 23:03:09.794][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-13 23:03:09.795][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:09.796][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:09.797][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:09.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:09.799][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:09.806][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:03:09.807][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:03:09.809][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:09.811][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:09.813][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:09.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:09.816][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:09.818][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:03:09.820][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:03:09.821][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:09.823][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:09.825][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:09.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:09.827][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:09.828][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:03:09.829][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:03:09.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:09.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:09.833][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:09.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:09.835][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:09.836][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:03:09.837][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:03:09.838][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:09.839][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:09.841][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:09.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:09.843][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:09.844][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:03:09.845][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:03:09.846][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:09.847][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:09.848][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:09.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:09.851][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:09.852][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:03:09.853][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:03:09.854][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:09.855][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:09.856][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:09.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:09.859][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:09.860][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:03:09.861][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:03:09.862][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:09.863][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:09.864][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:09.865][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:09.866][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:09.868][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:03:09.869][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:03:09.870][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:09.871][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:09.872][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:09.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:09.875][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:09.876][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:03:09.877][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:03:09.878][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:09.879][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:09.880][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:09.881][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:09.882][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:09.883][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:03:09.885][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:03:09.886][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:09.887][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:09.888][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:09.889][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:09.890][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:09.891][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:03:09.893][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:03:09.894][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:09.895][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:09.896][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:09.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:09.898][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:09.899][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:03:09.900][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:03:09.901][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:09.903][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:09.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:09.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:09.906][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:09.907][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:03:09.908][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:03:09.910][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:09.911][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:09.912][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:09.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:09.914][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:09.915][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:03:09.916][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:03:09.917][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:09.919][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:09.920][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:09.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:09.922][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:09.923][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:03:09.924][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:03:09.925][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:09.926][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:09.927][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:09.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:09.930][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:09.931][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:03:09.932][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:03:09.933][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:09.934][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:09.940][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:09.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:09.943][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-13 23:03:09.944][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:03:09.945][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:03:09.946][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:09.947][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:09.948][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:09.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:09.953][biodb$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.21-bioc/R/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-03-13 23:03:09.954][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-03-13 23:03:09.957][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-13 23:03:09.958][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-03-13 23:03:09.959][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-13 23:03:09.960][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-13 23:03:09.961][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-03-13 23:03:09.963][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-03-13 23:03:09.964][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-03-13 23:03:09.965][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-13 23:03:09.966][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-03-13 23:03:09.968][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-13 23:03:09.969][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-13 23:03:09.970][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-03-13 23:03:09.971][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-13 23:03:09.972][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-03-13 23:03:09.972][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-03-13 23:03:09.972][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-03-13 23:03:09.972][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-03-13 23:03:09.972][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-03-13 23:03:09.972][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-03-13 23:03:09.972][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-03-13 23:03:09.972][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-03-13 23:03:09.972][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-03-13 23:03:09.972][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-03-13 23:03:09.972][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-03-13 23:03:09.972][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-03-13 23:03:09.972][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-03-13 23:03:09.972][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-03-13 23:03:09.972][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-03-13 23:03:09.972][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-03-13 23:03:09.972][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-03-13 23:03:09.972][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-03-13 23:03:09.974][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-03-13 23:03:09.975][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-13 23:03:09.975][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-03-13 23:03:09.975][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-03-13 23:03:09.976][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-03-13 23:03:09.978][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-13 23:03:09.979][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-13 23:03:09.980][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-13 23:03:09.981][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-13 23:03:09.982][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-13 23:03:09.983][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-13 23:03:09.985][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-03-13 23:03:09.985][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-03-13 23:03:09.986][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-13 23:03:09.987][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-13 23:03:09.988][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-03-13 23:03:09.989][self$setPropertyValue]
biodb.DEBUG[2025-03-13 23:03:09.991][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-03-13 23:03:09.992][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-13 23:03:09.994][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-13 23:03:09.996][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-13 23:03:09.998][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-13 23:03:10.001][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-03-13 23:03:10.002][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-03-13 23:03:10.004][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-03-13 23:03:10.006][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-13 23:03:10.007][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-13 23:03:10.008][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-13 23:03:10.010][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-03-13 23:03:10.011][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-03-13 23:03:10.013][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-03-13 23:03:10.013][self$setPropertyValue] Setting property "urls" to "E:/biocbuild/bbs-3.21-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-03-13 23:03:10.014][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-13 23:03:10.015][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-13 23:03:10.016][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-03-13 23:03:10.017][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-03-13 23:03:10.019][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-03-13 23:03:10.021][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-13 23:03:10.022][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-13 23:03:10.024][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-13 23:03:10.026][private$addConnectorRules] Create new rule for URL "E:/biocbuild/bbs-3.21-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-13 23:03:10.027][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-13 23:03:10.028][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-03-13 23:03:10.030][biodb::testThat]
biodb.INFO [2025-03-13 23:03:10.032][biodb::testThat] Running test function  test.searchMultipleWordsInDescription  (" We can search for multiple words inside description field. ").
biodb.INFO [2025-03-13 23:03:10.033][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-13 23:03:10.034][biodb::testThat]
biodb.DEBUG[2025-03-13 23:03:10.037][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-03-13 23:03:10.038][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2025-03-13 23:03:10.039][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2025-03-13 23:03:10.043][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-13 23:03:10.045][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-13 23:03:10.047][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-13 23:03:10.049][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-13 23:03:10.050][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-13 23:03:10.052][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-13 23:03:10.053][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-13 23:03:10.055][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-13 23:03:10.056][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-13 23:03:10.057][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-03-13 23:03:10.059][private$doSearchForEntries] Total number of IDs = 2
biodb.DEBUG[2025-03-13 23:03:10.061][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2025-03-13 23:03:10.062][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-03-13 23:03:10.064][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-13 23:03:10.066][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-03-13 23:03:10.069][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2025-03-13 23:03:10.076][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-13 23:03:10.081][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2025-03-13 23:03:10.083][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-03-13 23:03:10.084][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-03-13 23:03:10.086][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-03-13 23:03:10.088][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-13 23:03:10.089][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:03:10.090][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:03:10.097][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:10.099][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:10.100][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:10.101][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-13 23:03:10.105][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:03:10.106][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:03:10.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.109][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:03:10.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:03:10.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.116][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-13 23:03:10.117][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-13 23:03:10.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.119][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.121][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-13 23:03:10.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-13 23:03:10.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.126][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-13 23:03:10.128][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-13 23:03:10.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.130][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.132][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-13 23:03:10.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-13 23:03:10.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.137][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-13 23:03:10.138][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-13 23:03:10.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.140][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.142][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-13 23:03:10.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-13 23:03:10.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.147][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-13 23:03:10.148][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-13 23:03:10.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.151][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.153][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-13 23:03:10.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-13 23:03:10.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.158][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-13 23:03:10.159][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-13 23:03:10.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.161][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.163][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-13 23:03:10.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-13 23:03:10.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.168][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-13 23:03:10.169][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-13 23:03:10.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.171][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.173][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-13 23:03:10.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-13 23:03:10.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.178][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-13 23:03:10.179][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-13 23:03:10.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.182][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.183][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-13 23:03:10.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-13 23:03:10.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.189][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-13 23:03:10.190][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-13 23:03:10.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.192][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.194][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-13 23:03:10.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-13 23:03:10.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.199][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-13 23:03:10.201][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-13 23:03:10.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.203][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.205][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-13 23:03:10.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-13 23:03:10.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.220][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-13 23:03:10.222][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-13 23:03:10.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.225][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.227][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-13 23:03:10.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-13 23:03:10.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.234][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-13 23:03:10.235][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-13 23:03:10.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.238][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.239][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-13 23:03:10.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-13 23:03:10.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.244][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-13 23:03:10.246][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-13 23:03:10.247][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.248][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.250][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-13 23:03:10.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-13 23:03:10.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.255][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-13 23:03:10.256][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-13 23:03:10.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.259][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.261][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-13 23:03:10.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-13 23:03:10.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.267][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:03:10.270][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:03:10.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.273][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.276][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:03:10.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:03:10.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.282][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:03:10.283][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:03:10.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.286][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.287][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:03:10.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:03:10.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.292][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-13 23:03:10.293][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-13 23:03:10.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.296][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.297][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-13 23:03:10.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-13 23:03:10.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.302][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-03-13 23:03:10.304][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-13 23:03:10.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.306][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.307][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-03-13 23:03:10.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-13 23:03:10.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:03:10.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:03:10.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:03:10.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:03:10.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:03:10.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:03:10.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.339][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-13 23:03:10.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-13 23:03:10.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.347][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-13 23:03:10.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-13 23:03:10.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.355][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-13 23:03:10.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-13 23:03:10.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.363][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-13 23:03:10.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-13 23:03:10.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.371][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-13 23:03:10.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-13 23:03:10.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.378][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-13 23:03:10.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-13 23:03:10.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.386][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-13 23:03:10.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-13 23:03:10.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.401][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-13 23:03:10.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-13 23:03:10.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.410][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-13 23:03:10.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-13 23:03:10.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.418][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-13 23:03:10.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-13 23:03:10.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.426][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-13 23:03:10.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-13 23:03:10.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.434][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-13 23:03:10.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-13 23:03:10.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.441][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-13 23:03:10.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-13 23:03:10.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.449][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-13 23:03:10.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-13 23:03:10.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.457][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-13 23:03:10.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-13 23:03:10.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.465][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-13 23:03:10.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-13 23:03:10.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.472][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-13 23:03:10.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-13 23:03:10.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.480][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-13 23:03:10.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-13 23:03:10.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.488][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-13 23:03:10.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-13 23:03:10.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.496][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-13 23:03:10.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-13 23:03:10.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.503][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-13 23:03:10.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-13 23:03:10.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.511][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:03:10.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:03:10.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.519][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:03:10.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:03:10.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.526][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:03:10.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:03:10.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.532][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-13 23:03:10.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-13 23:03:10.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.537][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-13 23:03:10.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-13 23:03:10.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.542][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-13 23:03:10.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-13 23:03:10.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.547][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-13 23:03:10.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-13 23:03:10.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.552][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-13 23:03:10.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-13 23:03:10.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.557][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-13 23:03:10.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-13 23:03:10.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.561][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-13 23:03:10.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-13 23:03:10.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.567][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-13 23:03:10.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-13 23:03:10.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.572][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-13 23:03:10.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-13 23:03:10.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.583][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-13 23:03:10.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-13 23:03:10.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.589][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-13 23:03:10.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-13 23:03:10.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.594][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-13 23:03:10.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-13 23:03:10.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.599][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-13 23:03:10.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-13 23:03:10.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.604][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-13 23:03:10.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-13 23:03:10.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.609][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-13 23:03:10.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-13 23:03:10.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.614][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:03:10.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:03:10.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.619][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:03:10.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:03:10.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.623][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:03:10.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:03:10.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.628][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-13 23:03:10.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-13 23:03:10.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.633][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-13 23:03:10.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-13 23:03:10.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.638][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-13 23:03:10.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-13 23:03:10.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.644][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-13 23:03:10.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-13 23:03:10.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.649][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-13 23:03:10.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-13 23:03:10.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.653][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-13 23:03:10.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-13 23:03:10.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.658][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-13 23:03:10.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-13 23:03:10.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.663][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-13 23:03:10.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-13 23:03:10.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.668][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-13 23:03:10.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-13 23:03:10.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.673][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-13 23:03:10.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-13 23:03:10.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.678][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-13 23:03:10.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-13 23:03:10.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.682][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-13 23:03:10.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-13 23:03:10.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.687][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-13 23:03:10.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-13 23:03:10.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.692][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-13 23:03:10.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-13 23:03:10.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.698][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:03:10.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:03:10.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.703][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:03:10.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:03:10.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.708][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:03:10.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:03:10.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.718][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:03:10.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:03:10.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.724][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:03:10.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:03:10.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.729][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-13 23:03:10.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-13 23:03:10.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.734][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-13 23:03:10.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-13 23:03:10.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:03:10.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:03:10.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.743][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-13 23:03:10.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-13 23:03:10.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:03:10.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:03:10.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:03:10.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:03:10.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:03:10.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:03:10.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:03:10.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:03:10.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.768][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:03:10.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:03:10.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:03:10.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:03:10.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-13 23:03:10.777][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2025-03-13 23:03:10.778][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:03:10.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:03:10.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.783][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:03:10.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:03:10.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.788][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:03:10.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:03:10.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.793][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:03:10.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:03:10.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-13 23:03:10.798][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-13 23:03:10.799][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-03-13 23:03:10.800][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-13 23:03:10.801][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:03:10.802][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:03:10.816][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:10.817][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:10.818][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:10.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:10.821][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2025-03-13 23:03:10.822][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-03-13 23:03:10.824][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-13 23:03:10.826][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-03-13 23:03:10.828][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2025-03-13 23:03:10.830][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-13 23:03:10.833][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-03-13 23:03:10.834][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-03-13 23:03:10.836][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-03-13 23:03:10.837][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-03-13 23:03:10.839][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-13 23:03:10.840][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:03:10.841][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:03:10.858][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:10.860][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:10.861][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:10.862][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-13 23:03:10.871][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:03:10.872][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:03:10.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.875][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.877][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:03:10.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:03:10.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.882][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-13 23:03:10.884][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-13 23:03:10.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.886][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.887][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-13 23:03:10.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-13 23:03:10.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.892][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-13 23:03:10.894][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-13 23:03:10.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.896][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.897][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-13 23:03:10.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-13 23:03:10.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.902][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-13 23:03:10.903][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-13 23:03:10.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.906][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.907][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-13 23:03:10.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-13 23:03:10.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.912][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-13 23:03:10.914][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-13 23:03:10.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.916][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.917][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-13 23:03:10.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-13 23:03:10.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.922][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-13 23:03:10.924][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-13 23:03:10.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.926][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.927][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-13 23:03:10.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-13 23:03:10.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.932][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-13 23:03:10.934][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-13 23:03:10.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.936][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.937][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-13 23:03:10.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-13 23:03:10.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.942][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-13 23:03:10.943][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-13 23:03:10.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.946][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.947][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-13 23:03:10.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-13 23:03:10.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.952][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-13 23:03:10.953][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-13 23:03:10.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.956][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.957][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-13 23:03:10.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-13 23:03:10.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.962][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-13 23:03:10.963][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-13 23:03:10.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.966][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.967][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-13 23:03:10.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-13 23:03:10.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.975][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-13 23:03:10.977][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-13 23:03:10.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.981][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.983][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-13 23:03:10.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-13 23:03:10.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.988][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-13 23:03:10.989][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-13 23:03:10.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.992][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.993][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-13 23:03:10.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-13 23:03:10.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:10.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:10.998][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-13 23:03:10.999][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-13 23:03:11.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.002][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.003][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-13 23:03:11.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-13 23:03:11.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.014][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-13 23:03:11.015][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-13 23:03:11.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.018][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.020][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-13 23:03:11.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-13 23:03:11.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.025][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:03:11.026][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:03:11.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.028][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.030][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:03:11.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:03:11.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.035][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:03:11.036][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:03:11.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.038][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.040][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:03:11.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:03:11.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.044][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-13 23:03:11.046][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-13 23:03:11.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.048][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.050][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-13 23:03:11.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-13 23:03:11.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.055][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-03-13 23:03:11.056][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-13 23:03:11.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.058][ef$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.060][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-03-13 23:03:11.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-13 23:03:11.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:03:11.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:03:11.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:03:11.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:03:11.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:03:11.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:03:11.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.079][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-13 23:03:11.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-13 23:03:11.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.084][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-13 23:03:11.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-13 23:03:11.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.089][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-13 23:03:11.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-13 23:03:11.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.094][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-13 23:03:11.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-13 23:03:11.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.099][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-13 23:03:11.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-13 23:03:11.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.104][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-13 23:03:11.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-13 23:03:11.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.109][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-13 23:03:11.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-13 23:03:11.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.114][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-13 23:03:11.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-13 23:03:11.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.118][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-13 23:03:11.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-13 23:03:11.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.123][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-13 23:03:11.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-13 23:03:11.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.128][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-13 23:03:11.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-13 23:03:11.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-13 23:03:11.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-13 23:03:11.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.143][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-13 23:03:11.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-13 23:03:11.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.149][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-13 23:03:11.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-13 23:03:11.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.154][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-13 23:03:11.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-13 23:03:11.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.159][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-13 23:03:11.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-13 23:03:11.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.164][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-13 23:03:11.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-13 23:03:11.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.169][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-13 23:03:11.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-13 23:03:11.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.174][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-13 23:03:11.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-13 23:03:11.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.178][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-13 23:03:11.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-13 23:03:11.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.183][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-13 23:03:11.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-13 23:03:11.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.188][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:03:11.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:03:11.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.193][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:03:11.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:03:11.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.198][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:03:11.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:03:11.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.203][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-13 23:03:11.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-13 23:03:11.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.207][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-13 23:03:11.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-13 23:03:11.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.212][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-13 23:03:11.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-13 23:03:11.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.217][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-13 23:03:11.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-13 23:03:11.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.223][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-13 23:03:11.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-13 23:03:11.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.228][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-13 23:03:11.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-13 23:03:11.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.233][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-13 23:03:11.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-13 23:03:11.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.238][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-13 23:03:11.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-13 23:03:11.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.243][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-13 23:03:11.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-13 23:03:11.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.248][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-13 23:03:11.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-13 23:03:11.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.253][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-13 23:03:11.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-13 23:03:11.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.258][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-13 23:03:11.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-13 23:03:11.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.263][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-13 23:03:11.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-13 23:03:11.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.269][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-13 23:03:11.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-13 23:03:11.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.279][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-13 23:03:11.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-13 23:03:11.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.285][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:03:11.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:03:11.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.290][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:03:11.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:03:11.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.295][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:03:11.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:03:11.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.302][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-13 23:03:11.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-13 23:03:11.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.307][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-13 23:03:11.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-13 23:03:11.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.311][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-13 23:03:11.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-13 23:03:11.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.316][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-13 23:03:11.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-13 23:03:11.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.321][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-13 23:03:11.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-13 23:03:11.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.326][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-13 23:03:11.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-13 23:03:11.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.331][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-13 23:03:11.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-13 23:03:11.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.336][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-13 23:03:11.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-13 23:03:11.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.341][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-13 23:03:11.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-13 23:03:11.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.346][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-13 23:03:11.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-13 23:03:11.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.351][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-13 23:03:11.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-13 23:03:11.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.355][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-13 23:03:11.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-13 23:03:11.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.360][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-13 23:03:11.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-13 23:03:11.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.365][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-13 23:03:11.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-13 23:03:11.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.371][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:03:11.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:03:11.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.376][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:03:11.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:03:11.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.381][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:03:11.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:03:11.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.386][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:03:11.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:03:11.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.391][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-13 23:03:11.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-13 23:03:11.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.396][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-13 23:03:11.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-13 23:03:11.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.401][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-13 23:03:11.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-13 23:03:11.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:03:11.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:03:11.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.417][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-13 23:03:11.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-13 23:03:11.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.422][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:03:11.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:03:11.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:03:11.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:03:11.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:03:11.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:03:11.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.437][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:03:11.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:03:11.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:03:11.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:03:11.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-13 23:03:11.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-13 23:03:11.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-13 23:03:11.452][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2025-03-13 23:03:11.453][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:03:11.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:03:11.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.458][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:03:11.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:03:11.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.463][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:03:11.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:03:11.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.468][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:03:11.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:03:11.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-13 23:03:11.472][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-13 23:03:11.474][private$doSearchForEntries] COUNT IDS = 2
biodb.DEBUG[2025-03-13 23:03:11.475][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-13 23:03:11.476][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:03:11.477][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:03:11.485][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:11.486][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:11.487][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:11.488][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:11.493][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-03-13 23:03:11.495][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2025-03-13 23:03:11.496][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2025-03-13 23:03:11.498][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-13 23:03:11.500][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-13 23:03:11.502][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-13 23:03:11.503][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-13 23:03:11.505][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-13 23:03:11.506][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-13 23:03:11.508][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-13 23:03:11.509][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-13 23:03:11.510][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-13 23:03:11.512][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-03-13 23:03:11.513][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-03-13 23:03:11.515][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:03:11.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:03:11.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.520][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:03:11.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:03:11.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.525][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:03:11.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:03:11.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.530][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:03:11.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:03:11.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.535][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:03:11.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:03:11.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.540][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:03:11.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:03:11.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.550][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:03:11.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:03:11.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-13 23:03:11.556][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-13 23:03:11.558][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-03-13 23:03:11.559][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-13 23:03:11.560][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:03:11.561][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:03:11.580][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:11.581][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:11.582][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:11.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-13 23:03:11.585][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:03:11.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:03:11.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.590][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:03:11.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:03:11.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.595][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:03:11.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:03:11.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.599][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:03:11.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:03:11.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.604][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:03:11.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:03:11.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.609][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:03:11.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:03:11.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.614][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:03:11.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:03:11.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-13 23:03:11.619][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2025-03-13 23:03:11.620][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-03-13 23:03:11.622][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-13 23:03:11.623][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:03:11.624][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:03:11.631][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:11.632][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:11.633][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:11.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-13 23:03:11.640][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-03-13 23:03:11.641][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2025-03-13 23:03:11.642][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2025-03-13 23:03:11.644][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-13 23:03:11.646][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-13 23:03:11.648][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-13 23:03:11.650][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-13 23:03:11.651][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-13 23:03:11.652][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-13 23:03:11.654][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-13 23:03:11.655][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-13 23:03:11.656][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-13 23:03:11.658][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-03-13 23:03:11.659][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-03-13 23:03:11.661][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:03:11.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:03:11.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.666][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:03:11.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:03:11.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.671][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:03:11.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:03:11.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.676][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:03:11.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:03:11.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.681][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:03:11.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:03:11.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.686][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:03:11.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:03:11.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.691][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:03:11.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:03:11.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-13 23:03:11.702][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2025-03-13 23:03:11.703][private$doSearchForEntries] COUNT IDS = 0
biodb.DEBUG[2025-03-13 23:03:11.705][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-13 23:03:11.706][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:03:11.707][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:03:11.714][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:11.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:11.717][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:11.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-13 23:03:11.719][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:03:11.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:03:11.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.724][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:03:11.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:03:11.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.729][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:03:11.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:03:11.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.734][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:03:11.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:03:11.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.739][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:03:11.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:03:11.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.744][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:03:11.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:03:11.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-13 23:03:11.749][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-13 23:03:11.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-13 23:03:11.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-13 23:03:11.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-13 23:03:11.754][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-13 23:03:11.755][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-03-13 23:03:11.757][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-13 23:03:11.758][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:03:11.759][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:03:11.779][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:11.781][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:11.782][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:11.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-03-13 23:03:11.793][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-03-13 23:03:11.795][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-03-13 23:03:11.796][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-03-13 23:03:11.797][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-03-13 23:03:11.799][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-13 23:03:11.801][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-13 23:03:11.802][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-13 23:03:11.804][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-13 23:03:11.806][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-03-13 23:03:11.807][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 243 ]
> 
> proc.time()
   user  system elapsed 
  10.26    0.78   25.32

CHECK results for biodbHmdb on palomino7

Summary

Command output

Installation output

Tests output

Example timings