Multiple platform build/check report for BioC 3.21 - BUILD results for SPONGE on nebbiolo1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.1 LTS)	x86_64	R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences"	4767
palomino7	Windows Server 2022 Datacenter	x64	R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences"	4487
lconway	macOS 12.7.1 Monterey	x86_64	R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences"	4450
kjohnson3	macOS 13.7.1 Ventura	arm64	R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences"	4405
kunpeng2	Linux (openEuler 22.03 LTS-SP1)	aarch64	R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences"	4398
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for SPONGE on nebbiolo1

To the developers/maintainers of the SPONGE package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SPONGE.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: SPONGE

Version: 1.29.0

Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data SPONGE

StartedAt: 2025-01-13 19:15:22 -0500 (Mon, 13 Jan 2025)

EndedAt: 2025-01-13 19:20:43 -0500 (Mon, 13 Jan 2025)

EllapsedTime: 321.4 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data SPONGE
###
##############################################################################
##############################################################################


* checking for file ‘SPONGE/DESCRIPTION’ ... OK
* preparing ‘SPONGE’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘SPONGE.Rmd’ using rmarkdown
Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "SPONGE vignette", and the latter is "Sparse Partial correlation ON Gene Expression with SPONGE". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.
--- finished re-building ‘SPONGE.Rmd’

--- re-building ‘spongEffects.Rmd’ using rmarkdown

Quitting from lines 265-272 [unnamed-chunk-25] (spongEffects.Rmd)
Error: processing vignette 'spongEffects.Rmd' failed with diagnostics:
HTTP 500 Internal Server Error.
--- failed re-building ‘spongEffects.Rmd’

SUMMARY: processing the following file failed:
  ‘spongEffects.Rmd’

Error: Vignette re-building failed.
Execution halted