Aaron Lun
| Snapshot Date: 2025-03-16 13:40 -0400 (Sun, 16 Mar 2025) |
| git_url: https://git.bioconductor.org/packages/Rigraphlib |
| git_branch: devel |
| git_last_commit: 5408c43 |
| git_last_commit_date: 2025-03-09 16:15:24 -0400 (Sun, 09 Mar 2025) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-03-17 11:41 -0400 (Mon, 17 Mar 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences" | 4545 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" | 4576 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" | 4528 |
| kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4459 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1770/2313 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| Rigraphlib 0.99.4 (landing page) Aaron Lun
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | |||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | WARNINGS | OK | | ||||||||
| kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | WARNINGS | ||||||||||
|
To the developers/maintainers of the Rigraphlib package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Rigraphlib.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: Rigraphlib |
| Version: 0.99.4 |
| Command: /home/biocbuild/R/R/bin/R CMD check --install=check:Rigraphlib.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings Rigraphlib_0.99.4.tar.gz |
| StartedAt: 2025-03-17 10:12:28 -0000 (Mon, 17 Mar 2025) |
| EndedAt: 2025-03-17 10:12:50 -0000 (Mon, 17 Mar 2025) |
| EllapsedTime: 22.0 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: Rigraphlib.Rcheck |
| Warnings: 1 |
##############################################################################
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###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD check --install=check:Rigraphlib.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings Rigraphlib_0.99.4.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib.Rcheck’
* using R Under development (unstable) (2025-02-19 r87757)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
GNU Fortran (GCC) 14.2.0
* running under: openEuler 24.03 (LTS-SP1)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Rigraphlib/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘Rigraphlib’ version ‘0.99.4’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Rigraphlib’ can be installed ... WARNING
Found the following significant warnings:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/arithchk.c:114:30: warning: zero-length gnu_printf format string [-Wformat-zero-length]
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/iio.c:91:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/iio.c:123:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/due.c:40:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/due.c:53:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/endfile.c:46:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rdfmt.c:39:23: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rdfmt.c:42:23: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rsfe.c:67:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c:85:20: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c:106:28: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c:158:47: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c:164:32: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c:187:15: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c:242:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c:246:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c:250:29: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c:348:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c:403:37: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c:427:37: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c:444:29: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c:455:37: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c:475:37: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c:510:26: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c:530:29: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c:540:45: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c:602:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/lread.c:313:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/lread.c:325:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/lread.c:352:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/lread.c:105:19: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/lread.c:786:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/lwrite.c:141:31: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/lwrite.c:166:57: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/lwrite.c:190:15: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/open.c:246:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/open.c:256:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/open.c:258:26: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/signal_.c:17:16: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/sue.c:38:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/sue.c:61:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/wref.c:140:45: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/wref.c:236:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/wref.c:286:15: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/wsfe.c:55:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/wsle.c:17:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/wsne.c:17:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/dfe.c:104:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/dfe.c:126:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/npp/npp6.c:853:17: warning: ‘__builtin_memset’ writing between 256 and 17179869176 bytes into a region of size 248 overflows the destination [-Wstringop-overflow=]
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/core/array.pmt:107:5: warning: ‘igraph_array3_resize’ is deprecated [-Wdeprecated-declarations]
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/core/array.pmt:107:5: warning: ‘igraph_array3_int_resize’ is deprecated [-Wdeprecated-declarations]
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/core/array.pmt:107:5: warning: ‘igraph_array3_char_resize’ is deprecated [-Wdeprecated-declarations]
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/core/array.pmt:107:5: warning: ‘igraph_array3_bool_resize’ is deprecated [-Wdeprecated-declarations]
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/core/matrix.c:234:13: warning: ‘igraph_vector_e_tol’ is deprecated [-Wdeprecated-declarations]
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/io/parsers/dl-parser.c:351:21: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/io/parsers/gml-parser.c:353:21: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/io/parsers/lgl-parser.c:329:21: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/io/parsers/ncol-parser.c:328:21: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/io/parsers/pajek-parser.c:460:21: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
See ‘/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib.Rcheck/00install.out’ for details.
* checking installed package size ... INFO
installed size is 41.1Mb
sub-directories of 1Mb or more:
lib64 40.4Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
'LinkingTo' field is unused: package has no 'src' directory
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 1 NOTE
See
‘/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib.Rcheck/00check.log’
for details.
Rigraphlib.Rcheck/00install.out
##############################################################################
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###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD INSTALL Rigraphlib
###
##############################################################################
##############################################################################
* installing to library ‘/home/biocbuild/R/R-devel_2025-02-19/site-library’
* installing *source* package ‘Rigraphlib’ ...
** this is package ‘Rigraphlib’ version ‘0.99.4’
** using staged installation
-- Version number: 0.10.15
-- The C compiler identification is GNU 14.2.0
-- The CXX compiler identification is GNU 14.2.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Performing Test COMPILER_SUPPORTS_UNKNOWN_WARNING_OPTION_FLAG
-- Performing Test COMPILER_SUPPORTS_UNKNOWN_WARNING_OPTION_FLAG - Failed
-- Performing Test COMPILER_HAS_DEPRECATED_ENUMVAL_ATTR
-- Performing Test COMPILER_HAS_DEPRECATED_ENUMVAL_ATTR - Success
-- Thread-local storage: supported (__thread)
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE
-- Found BLAS: /home/biocbuild/R/R-devel_2025-02-19/lib/libRblas.so
-- Found LAPACK: /home/biocbuild/R/R-devel_2025-02-19/lib/libRlapack.so
-- Looking for strcasecmp
-- Looking for strcasecmp - found
-- Looking for strncasecmp
-- Looking for strncasecmp - found
-- Looking for _stricmp
-- Looking for _stricmp - not found
-- Looking for _strnicmp
-- Looking for _strnicmp - not found
-- Looking for strdup
-- Looking for strdup - found
-- Looking for strndup
-- Looking for strndup - found
-- Looking for include file xlocale.h
-- Looking for include file xlocale.h - not found
-- Looking for uselocale
-- Looking for uselocale - found
-- Looking for _configthreadlocale
-- Looking for _configthreadlocale - not found
-- Performing Test HAVE__UMUL128
-- Performing Test HAVE__UMUL128 - Failed
-- Performing Test HAVE___UMULH
-- Performing Test HAVE___UMULH - Failed
-- Looking for C++ include sys/types.h
-- Looking for C++ include sys/types.h - found
-- Looking for C++ include stdint.h
-- Looking for C++ include stdint.h - found
-- Looking for C++ include stddef.h
-- Looking for C++ include stddef.h - found
-- Check size of __uint128_t
-- Check size of __uint128_t - done
-- Performing Test HAVE__POPCNT64
-- Performing Test HAVE__POPCNT64 - Failed
-- Performing Test HAVE__POPCNT
-- Performing Test HAVE__POPCNT - Failed
-- Performing Test HAVE__BITSCANFORWARD64
-- Performing Test HAVE__BITSCANFORWARD64 - Failed
-- Performing Test HAVE__BITSCANFORWARD
-- Performing Test HAVE__BITSCANFORWARD - Failed
-- Performing Test HAVE__BITSCANREVERSE64
-- Performing Test HAVE__BITSCANREVERSE64 - Failed
-- Performing Test HAVE__BITSCANREVERSE
-- Performing Test HAVE__BITSCANREVERSE - Failed
-- Performing Test HAVE_BUILTIN_OVERFLOW
-- Performing Test HAVE_BUILTIN_OVERFLOW - Success
-- Looking for _LIBCPP_VERSION
-- Looking for _LIBCPP_VERSION - not found
-- Looking for __GLIBCXX__
-- Looking for __GLIBCXX__ - found
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success
-- Performing Test HAVE_ENABLE_NEW_DTAGS
-- Performing Test HAVE_ENABLE_NEW_DTAGS - Success
-- Found Python3: /usr/bin/python3.11 (found version "3.11.6") found components: Interpreter
--
-- -----[ Build configuration ]----
-- Version: 0.10.15
-- CMake build type: Release
-- Library type: static
-- igraph_integer_t size: 64 bits
--
-- ----------[ Features ]----------
-- GLPK for optimization: yes
-- Reading GraphML files: yes
-- Thread-local storage: yes
-- Link-time optimization: no
--
-- --------[ Dependencies ]--------
-- ARPACK: vendored
-- BISON: no
-- BLAS: yes
-- FLEX: no
-- GLPK: vendored
-- GMP: vendored
-- LAPACK: yes
-- LibXml2: yes
-- OpenMP: yes
-- PLFIT: vendored
--
-- -----------[ Testing ]----------
-- Diff tool: diff
-- Sanitizers: none
-- Code coverage: no
-- Verify 'finally' stack: no
--
-- --------[ Documentation ]-------
-- HTML: no
-- PDF: no
-- INFO: no
--
-- igraph configured successfully.
--
-- Configuring done (6.8s)
-- Generating done (1.9s)
-- Build files have been written to: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/build
[ 0%] Building CXX object src/isomorphism/bliss/CMakeFiles/bliss.dir/defs.cc.o
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[ 2%] Built target bliss
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[ 5%] Building C object vendor/cs/CMakeFiles/cxsparse_vendored.dir/cs_etree.c.o
[ 5%] Building C object vendor/cs/CMakeFiles/cxsparse_vendored.dir/cs_fkeep.c.o
[ 5%] Building C object vendor/cs/CMakeFiles/cxsparse_vendored.dir/cs_gaxpy.c.o
[ 5%] Building C object vendor/cs/CMakeFiles/cxsparse_vendored.dir/cs_happly.c.o
[ 5%] Building C object vendor/cs/CMakeFiles/cxsparse_vendored.dir/cs_house.c.o
[ 5%] Building C object vendor/cs/CMakeFiles/cxsparse_vendored.dir/cs_ipvec.c.o
[ 5%] Building C object vendor/cs/CMakeFiles/cxsparse_vendored.dir/cs_leaf.c.o
[ 5%] Building C object vendor/cs/CMakeFiles/cxsparse_vendored.dir/cs_load.c.o
[ 5%] Building C object vendor/cs/CMakeFiles/cxsparse_vendored.dir/cs_lsolve.c.o
[ 5%] Building C object vendor/cs/CMakeFiles/cxsparse_vendored.dir/cs_ltsolve.c.o
[ 5%] Building C object vendor/cs/CMakeFiles/cxsparse_vendored.dir/cs_lu.c.o
[ 5%] Building C object vendor/cs/CMakeFiles/cxsparse_vendored.dir/cs_lusol.c.o
[ 5%] Building C object vendor/cs/CMakeFiles/cxsparse_vendored.dir/cs_malloc.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/cs/cs_malloc.c: In function ‘cs_igraph_realloc’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/cs/cs_malloc.c:34:26: warning: pointer ‘p’ may be used after ‘realloc’ [-Wuse-after-free]
34 | return ((*ok) ? pnew : p) ; /* return original p if failure */
| ~~~~~~~~~~~~~~^~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/cs/cs_malloc.c:32:12: note: call to ‘realloc’ here
32 | pnew = realloc (p, CS_MAX (n,1) * size) ; /* realloc the block */
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 5%] Building C object vendor/cs/CMakeFiles/cxsparse_vendored.dir/cs_maxtrans.c.o
[ 5%] Building C object vendor/cs/CMakeFiles/cxsparse_vendored.dir/cs_multiply.c.o
[ 5%] Building C object vendor/cs/CMakeFiles/cxsparse_vendored.dir/cs_norm.c.o
[ 5%] Building C object vendor/cs/CMakeFiles/cxsparse_vendored.dir/cs_permute.c.o
[ 5%] Building C object vendor/cs/CMakeFiles/cxsparse_vendored.dir/cs_pinv.c.o
[ 5%] Building C object vendor/cs/CMakeFiles/cxsparse_vendored.dir/cs_post.c.o
[ 5%] Building C object vendor/cs/CMakeFiles/cxsparse_vendored.dir/cs_pvec.c.o
[ 5%] Building C object vendor/cs/CMakeFiles/cxsparse_vendored.dir/cs_qr.c.o
[ 8%] Building C object vendor/cs/CMakeFiles/cxsparse_vendored.dir/cs_qrsol.c.o
[ 8%] Building C object vendor/cs/CMakeFiles/cxsparse_vendored.dir/cs_randperm.c.o
[ 8%] Building C object vendor/cs/CMakeFiles/cxsparse_vendored.dir/cs_reach.c.o
[ 8%] Building C object vendor/cs/CMakeFiles/cxsparse_vendored.dir/cs_scatter.c.o
[ 8%] Building C object vendor/cs/CMakeFiles/cxsparse_vendored.dir/cs_scc.c.o
[ 8%] Building C object vendor/cs/CMakeFiles/cxsparse_vendored.dir/cs_schol.c.o
[ 8%] Building C object vendor/cs/CMakeFiles/cxsparse_vendored.dir/cs_spsolve.c.o
[ 8%] Building C object vendor/cs/CMakeFiles/cxsparse_vendored.dir/cs_sqr.c.o
[ 8%] Building C object vendor/cs/CMakeFiles/cxsparse_vendored.dir/cs_symperm.c.o
[ 8%] Building C object vendor/cs/CMakeFiles/cxsparse_vendored.dir/cs_tdfs.c.o
[ 8%] Building C object vendor/cs/CMakeFiles/cxsparse_vendored.dir/cs_transpose.c.o
[ 8%] Building C object vendor/cs/CMakeFiles/cxsparse_vendored.dir/cs_updown.c.o
[ 8%] Building C object vendor/cs/CMakeFiles/cxsparse_vendored.dir/cs_usolve.c.o
[ 8%] Building C object vendor/cs/CMakeFiles/cxsparse_vendored.dir/cs_util.c.o
[ 8%] Building C object vendor/cs/CMakeFiles/cxsparse_vendored.dir/cs_utsolve.c.o
[ 8%] Built target cxsparse_vendored
[ 8%] Building C object vendor/f2c/CMakeFiles/arithchk.dir/arithchk.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/arithchk.c: In function ‘ccheck’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/arithchk.c:114:30: warning: zero-length gnu_printf format string [-Wformat-zero-length]
114 | const char *const emptyfmt = "";
| ^~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/arithchk.c:114:30: warning: zero-length gnu_printf format string [-Wformat-zero-length]
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/arithchk.c:114:30: warning: zero-length gnu_printf format string [-Wformat-zero-length]
[ 8%] Linking C executable arithchk
[ 8%] Built target arithchk
[ 8%] Generating arith.h for f2c...
[ 8%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/abort_.c.o
[ 8%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/dolio.c.o
[ 8%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/r_sin.c.o
[ 8%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/dummy.c.o
[ 8%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/dtime_.c.o
[ 8%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/iio.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/iio.c: In function ‘s_rsfi’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/iio.c:91:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
91 | if(n=c_si(a)) return(n);
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/iio.c: In function ‘s_wsfi’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/iio.c:123:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
123 | if(n=c_si(a)) return(n);
| ^
[ 8%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/r_sinh.c.o
[ 8%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/backspac.c.o
[ 8%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/due.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/due.c: In function ‘s_rdue’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/due.c:40:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
40 | if(n=c_due(a)) return(n);
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/due.c: In function ‘s_wdue’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/due.c:53:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
53 | if(n=c_due(a)) return(n);
| ^
[ 8%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/ilnw.c.o
[ 8%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/r_sqrt.c.o
[ 11%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/c_abs.c.o
[ 11%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/ef1asc_.c.o
[ 11%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/inquire.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/inquire.c: In function ‘f_inqu’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/inquire.c:67:27: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
67 | if(byfile && x != -1 || !byfile && p!=NULL)
| ~~~~~~~^~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/inquire.c:66:11: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
66 | if(a->inex!=NULL)
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/inquire.c:70:11: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
70 | if(a->inopen!=NULL)
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/inquire.c:75:38: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
75 | if(byfile || p!=NULL && p->ufnm!=NULL)
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/inquire.c:74:11: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
74 | if(a->innamed!=NULL)
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/inquire.c:78:11: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
78 | if(a->inname!=NULL)
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/inquire.c:83:11: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
83 | if(a->inacc!=NULL && p!=NULL && p->ufd!=NULL)
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/inquire.c:87:11: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
87 | if(a->inseq!=NULL)
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/inquire.c:91:11: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
91 | if(a->indir!=NULL)
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/inquire.c:95:11: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
95 | if(a->infmt!=NULL)
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/inquire.c:99:11: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
99 | if(a->inform!=NULL)
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/inquire.c:103:11: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
103 | if(a->inunf)
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/inquire.c:112:11: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
112 | if(a->inblank && p!=NULL && p->ufmt)
| ^
[ 11%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/r_tan.c.o
[ 11%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/c_cos.c.o
[ 11%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/ef1cmc_.c.o
[ 11%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/l_ge.c.o
[ 11%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/r_tanh.c.o
[ 11%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/c_div.c.o
[ 11%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/endfile.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/endfile.c: In function ‘f_end’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/endfile.c:46:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
46 | if (tf = FOPEN(nbuf, f__w_mode[0]))
| ^~
[ 11%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/l_gt.c.o
[ 11%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/rdfmt.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rdfmt.c: In function ‘rd_Z’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rdfmt.c:39:23: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
39 | while(ch = *sc++)
| ^~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rdfmt.c:42:23: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
42 | while(ch = *sc++)
| ^~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rdfmt.c:71:16: warning: suggest parentheses around ‘+’ inside ‘>>’ [-Wparentheses]
71 | w2 = w1+1 >> 1;
| ~~^~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rdfmt.c:93:37: warning: suggest parentheses around ‘-’ inside ‘<<’ [-Wparentheses]
93 | *t = hex[*s0 & 0xff]-1 << 4 | hex[s0[1] & 0xff]-1;
| ~~~~~~~~~~~~~~~^~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rdfmt.c:93:64: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses]
93 | *t = hex[*s0 & 0xff]-1 << 4 | hex[s0[1] & 0xff]-1;
| ~~~~~~~~~~~~~~~~~^~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rdfmt.c: In function ‘rd_F’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rdfmt.c:261:17: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
261 | if (!w--) goto zero; GET(ch); }
| ^~
In file included from /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rdfmt.c:15:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/fmt.h:89:16: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
89 | #define GET(x) if((x=(*f__getn)())<0) return(x)
| ^~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rdfmt.c:261:38: note: in expansion of macro ‘GET’
261 | if (!w--) goto zero; GET(ch); }
| ^~~
[ 11%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/c_exp.c.o
[ 11%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/erf_.c.o
[ 11%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/l_le.c.o
[ 11%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/rewind.c.o
[ 11%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/c_log.c.o
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[ 11%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/rsfe.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rsfe.c: In function ‘s_rsfe’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rsfe.c:67:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
67 | if(n=c_sfe(a)) return(n);
| ^
[ 14%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/c_sin.c.o
[ 14%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/err.c.o
[ 14%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/lbitbits.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/lbitbits.c: In function ‘lbit_cshift’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/lbitbits.c:47:65: warning: suggest parentheses around ‘-’ inside ‘>>’ [-Wparentheses]
47 | return (integer)(x << b | x >> LONGBITS -b );
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/lbitbits.c:51:48: warning: suggest parentheses around ‘-’ inside ‘<<’ [-Wparentheses]
51 | return (integer)(x << LONGBITS - b | x >> b);
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/lbitbits.c:60:61: warning: suggest parentheses around ‘-’ inside ‘>>’ [-Wparentheses]
60 | return (integer)(y | z & (x << b | x >> len - b));
| ~~~~^~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/lbitbits.c:60:40: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses]
60 | return (integer)(y | z & (x << b | x >> len - b));
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/lbitbits.c:64:53: warning: suggest parentheses around ‘-’ inside ‘<<’ [-Wparentheses]
64 | return (integer)(y | z & (x >> b | x << len - b));
| ~~~~^~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/lbitbits.c:64:32: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses]
64 | return (integer)(y | z & (x >> b | x << len - b));
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 14%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/rsli.c.o
[ 14%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/c_sqrt.c.o
[ 14%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/etime_.c.o
[ 14%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/lbitshft.c.o
[ 14%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/rsne.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c: In function ‘hash’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c:85:20: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
85 | for(x = 0; c = *s++; x = x & 0x4000 ? ((x << 1) & 0x7fff) + 1 : x << 1)
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c: In function ‘mk_hashtab’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c:106:28: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
106 | for(x = &nl_cache; y = *x; x0 = x, x = &y->next)
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c: In function ‘nl_init’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c:158:47: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
158 | for(s = "ABCDEFGHIJKLMNOPQRSTUVWXYZ"; c = *s++; )
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c:164:32: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
164 | for(s = "0123456789_"; c = *s++; )
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c: In function ‘getname’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c:187:15: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
187 | while(*s = Alphanum[GETC(ch) & 0xff])
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c: In function ‘getdimen’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c:242:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
242 | if (k = getnum(chp, x1))
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c:246:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
246 | if (k = getnum(chp, &x2))
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c:250:29: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
250 | if (k = getnum(chp, &x3))
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c: In function ‘x_rsne’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c:348:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
348 | if (ch = getname(buf,sizeof(buf)))
| ^~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c:400:47: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
400 | if (ch <= ' ' && ch >= 0 || ch == ',')
| ~~~~~~~~~~^~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c:403:37: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
403 | if (ch = getname(buf,sizeof(buf)))
| ^~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c:427:37: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
427 | if (k = getdimen(&ch, dn, (ftnlen)size,
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c:444:29: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
444 | if (k = getdimen(&ch, dn, size, nomax, &b))
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c:455:37: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
455 | if (k = getdimen(&ch, dn1, dn->delta**dims,
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c:475:37: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
475 | if (k = getdimen(&ch, &substr, size, size, &b))
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c:510:26: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
510 | else if (dims = v->dims) {
| ^~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c:530:29: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
530 | if (k = l_read(&no1, vaddr + iva, size, type))
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c:540:45: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
540 | if (k = l_read(&no2, vaddr + iva,
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c:548:28: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
548 | if (readall)
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c: In function ‘s_rsne’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c:602:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
602 | if(n = c_le(a))
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c: In function ‘mk_hashtab’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c:111:19: warning: ‘x0’ may be used uninitialized [-Wmaybe-uninitialized]
111 | y = *x0;
| ~~^~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c:105:24: note: ‘x0’ was declared here
105 | hashtab **x, **x0, *y;
| ^~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c: In function ‘x_rsne’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c:578:44: warning: ‘dn’ may be used uninitialized [-Wmaybe-uninitialized]
578 | for(dn1 = dn0; dn1 <= dn; dn1++) {
| ~~~~^~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c:310:16: note: ‘dn’ was declared here
310 | dimen *dn, *dn0, *dn1;
| ^~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c:535:43: warning: ‘dn0’ may be used uninitialized [-Wmaybe-uninitialized]
535 | iva += dn0->delta;
| ~~~^~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c:310:21: note: ‘dn0’ was declared here
310 | dimen *dn, *dn0, *dn1;
| ^~~
[ 14%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/cabs.c.o
[ 14%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/exit_.c.o
[ 14%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/lread.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/lread.c: In function ‘l_C’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/lread.c:290:20: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
290 | if (rd_count(ch))
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/lread.c:313:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
313 | if (ch = l_R(1,0))
| ^~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/lread.c:325:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
325 | if (ch = l_R(1,0))
| ^~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/lread.c: In function ‘nmL_getc’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/lread.c:352:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
352 | if (rv = *nmL_next++)
| ^~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/lread.c: In function ‘l_L’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/lread.c:434:19: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
434 | if(GETC(ch)!='*')
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/lread.c: In function ‘l_read’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/lread.c:105:19: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
105 | #define ERR(x) if(n=(x)) return(n)
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/lread.c:689:25: note: in expansion of macro ‘ERR’
689 | ERR(l_R(0,1));
| ^~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/lread.c:105:19: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
105 | #define ERR(x) if(n=(x)) return(n)
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/lread.c:694:25: note: in expansion of macro ‘ERR’
694 | ERR(l_R(0,0));
| ^~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/lread.c:105:19: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
105 | #define ERR(x) if(n=(x)) return(n)
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/lread.c:705:25: note: in expansion of macro ‘ERR’
705 | ERR(l_C());
| ^~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/lread.c:105:19: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
105 | #define ERR(x) if(n=(x)) return(n)
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/lread.c:710:25: note: in expansion of macro ‘ERR’
710 | ERR(l_L());
| ^~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/lread.c:105:19: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
105 | #define ERR(x) if(n=(x)) return(n)
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/lread.c:713:25: note: in expansion of macro ‘ERR’
713 | ERR(l_CHAR());
| ^~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/lread.c: In function ‘s_rsle’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/lread.c:786:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
786 | if(n=c_le(a)) return(n);
| ^
[ 14%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/s_cat.c.o
[ 14%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/close.c.o
[ 14%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/f77_aloc.c.o
[ 14%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/lwrite.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/lwrite.c: In function ‘l_g’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/lwrite.c:141:31: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
141 | while(b[0] = b[1])
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/lwrite.c:166:57: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
166 | for(c1 = '.', c = 'E'; *b = c1;
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/lwrite.c: In function ‘l_put’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/lwrite.c:190:15: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
190 | while(c = *s++)
| ^
[ 14%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/s_cmp.c.o
[ 14%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/ctype.c.o
[ 14%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/f77vers.c.o
[ 14%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/s_copy.c.o
[ 14%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/d_abs.c.o
[ 14%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/fmt.c.o
[ 17%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/open.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/open.c: In function ‘f_open’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/open.c:246:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
246 | if (tf = FOPEN(buf,f__w_mode[0]))
| ^~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/open.c:256:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
256 | if (tf = FOPEN(buf, f__r_mode[ufmt]))
| ^~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/open.c:258:26: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
258 | else if (tf = FOPEN(buf, f__w_mode[ufmt])) {
| ^~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/open.c:270:11: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
270 | if(b->useek)
| ^
[ 17%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/s_paus.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/s_paus.c:40:1: warning: ‘s_1paus’ defined but not used [-Wunused-function]
40 | s_1paus(FILE *fin)
| ^~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/s_paus.c:30:1: warning: ‘waitpause’ defined but not used [-Wunused-function]
30 | waitpause(Sigarg)
| ^~~~~~~~~
[ 17%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/d_acos.c.o
[ 17%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/fmtlib.c.o
[ 17%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/pow_ci.c.o
[ 17%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/s_rnge.c.o
[ 17%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/d_asin.c.o
[ 17%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/ftell_.c.o
[ 17%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/pow_dd.c.o
[ 17%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/s_stop.c.o
[ 17%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/d_atan.c.o
[ 17%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/pow_di.c.o
[ 17%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/sfe.c.o
[ 17%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/d_atn2.c.o
[ 17%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/getenv_.c.o
[ 17%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/pow_hh.c.o
[ 17%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/sig_die.c.o
[ 17%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/d_cnjg.c.o
[ 17%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/h_abs.c.o
[ 17%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/pow_ii.c.o
[ 17%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/signal_.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/signal_.c: In function ‘signal_’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/signal_.c:17:16: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
17 | return (ftnint)signal(sig, proc);
| ^
[ 20%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/d_cos.c.o
[ 20%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/h_dim.c.o
[ 20%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/pow_ri.c.o
[ 20%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/signbit.c.o
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[ 20%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/h_dnnt.c.o
[ 20%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/pow_zi.c.o
[ 20%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/sue.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/sue.c: In function ‘s_rsue’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/sue.c:38:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
38 | if(n=c_sue(a)) return(n);
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/sue.c: In function ‘s_wsue’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/sue.c:61:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
61 | if(n=c_sue(a)) return(n);
| ^
[ 20%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/d_dim.c.o
[ 20%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/h_indx.c.o
[ 20%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/pow_zz.c.o
[ 20%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/system_.c.o
[ 20%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/d_exp.c.o
[ 20%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/h_len.c.o
[ 20%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/r_abs.c.o
[ 20%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/typesize.c.o
[ 20%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/d_imag.c.o
[ 20%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/h_mod.c.o
[ 20%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/r_acos.c.o
[ 20%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/uio.c.o
[ 23%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/d_int.c.o
[ 23%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/h_nint.c.o
[ 23%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/r_asin.c.o
[ 23%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/uninit.c.o
[ 23%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/d_lg10.c.o
[ 23%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/h_sign.c.o
[ 23%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/r_atan.c.o
[ 23%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/util.c.o
[ 23%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/d_log.c.o
[ 23%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/hl_ge.c.o
[ 23%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/r_atn2.c.o
[ 23%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/wref.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/wref.c: In function ‘wrt_E’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/wref.c:140:45: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
140 | for(s -= 2, e1 = 2; s[0] = s[1]; s++)
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/wref.c: In function ‘wrt_F’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/wref.c:236:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
236 | if (n = f__scale)
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/wref.c:236:12: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
236 | if (n = f__scale)
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/wref.c:286:15: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
286 | while(n = *b++)
| ^
[ 23%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/d_mod.c.o
[ 23%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/hl_gt.c.o
[ 23%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/r_cnjg.c.o
[ 23%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/wrtfmt.c.o
[ 23%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/d_nint.c.o
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/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/wsfe.c: In function ‘s_wsfe’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/wsfe.c:55:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
55 | if(n=c_sfe(a)) return(n);
| ^
[ 23%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/d_prod.c.o
[ 26%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/hl_lt.c.o
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/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/wsle.c: In function ‘s_wsle’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/wsle.c:17:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
17 | if(n=c_le(a)) return(n);
| ^
[ 26%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/d_sign.c.o
[ 26%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/i77vers.c.o
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/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/wsne.c: In function ‘s_wsne’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/wsne.c:17:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
17 | if(n=c_le(a))
| ^
[ 26%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/d_sin.c.o
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[ 26%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/d_sqrt.c.o
[ 26%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/i_dnnt.c.o
[ 26%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/r_int.c.o
[ 26%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/z_cos.c.o
[ 26%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/d_tan.c.o
[ 29%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/i_indx.c.o
[ 29%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/r_lg10.c.o
[ 29%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/z_div.c.o
[ 29%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/d_tanh.c.o
[ 29%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/i_len.c.o
[ 29%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/r_log.c.o
[ 29%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/z_exp.c.o
[ 29%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/derf_.c.o
[ 29%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/i_mod.c.o
[ 29%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/r_mod.c.o
[ 29%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/z_log.c.o
[ 29%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/derfc_.c.o
[ 29%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/i_nint.c.o
[ 29%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/r_nint.c.o
[ 29%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/z_sin.c.o
[ 29%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/dfe.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/dfe.c: In function ‘s_rdfe’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/dfe.c:104:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
104 | if(n=c_dfe(a))return(n);
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/dfe.c: In function ‘s_wdfe’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/dfe.c:126:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
126 | if(n=c_dfe(a)) return(n);
| ^
[ 29%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/i_sign.c.o
[ 29%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/r_sign.c.o
[ 29%] Building C object vendor/f2c/CMakeFiles/f2c_vendored.dir/z_sqrt.c.o
[ 29%] Built target f2c_vendored
[ 29%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/amd/amd_1.c.o
[ 29%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/amd/amd_2.c.o
[ 32%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/amd/amd_aat.c.o
[ 32%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/amd/amd_control.c.o
[ 32%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/amd/amd_defaults.c.o
[ 32%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/amd/amd_info.c.o
[ 32%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/amd/amd_order.c.o
[ 32%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/amd/amd_post_tree.c.o
[ 32%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/amd/amd_postorder.c.o
[ 32%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/amd/amd_preprocess.c.o
[ 32%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/amd/amd_valid.c.o
[ 32%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/api/advbas.c.o
[ 32%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/api/asnhall.c.o
[ 32%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/api/asnlp.c.o
[ 32%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/api/asnokalg.c.o
[ 32%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/api/ckasn.c.o
[ 32%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/api/ckcnf.c.o
[ 32%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/api/cplex.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/cplex.c: In function ‘scan_token’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/cplex.c:241:49: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
241 | else if (isalpha(csa->c) || csa->c != '.' && strchr(CHAR_SET,
| ^
[ 32%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/api/cpp.c.o
[ 32%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/api/cpxbas.c.o
[ 32%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/api/graph.c.o
[ 32%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/api/gridgen.c.o
[ 35%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/api/intfeas1.c.o
[ 35%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/api/maxffalg.c.o
[ 35%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/api/maxflp.c.o
[ 35%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/api/mcflp.c.o
[ 35%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/api/mcfokalg.c.o
[ 35%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/api/mcfrelax.c.o
[ 35%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/api/minisat1.c.o
[ 35%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/api/mpl.c.o
In file included from /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/mpl.c:22:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/mpl.c: In function ‘glp_mpl_postsolve’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl.h:2567:26: warning: ‘stat’ may be used uninitialized [-Wmaybe-uninitialized]
2567 | #define mpl_put_row_soln _glp_mpl_put_row_soln
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/mpl.c:229:10: note: in expansion of macro ‘mpl_put_row_soln’
229 | mpl_put_row_soln(tran, i, stat, prim, dual);
| ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/mpl.c:193:23: note: ‘stat’ was declared here
193 | int i, j, m, n, stat, ret;
| ^~~~
[ 35%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/api/mps.c.o
In file included from /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/mps.c:22:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/mps.c: In function ‘read_bounds’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/mps.c:866:23: warning: comparison between two arrays [-Warray-compare]
866 | xassert(type != type);
| ^~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/env/env.h:175:16: note: in definition of macro ‘xassert’
175 | ((void)((expr) || (glp_assert_(#expr, IGRAPH_FILE_BASENAME, __LINE__), 1)))
| ^~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/mps.c:866:23: note: use ‘&type[0] != &type[0]’ to compare the addresses
866 | xassert(type != type);
| ^~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/env/env.h:175:16: note: in definition of macro ‘xassert’
175 | ((void)((expr) || (glp_assert_(#expr, IGRAPH_FILE_BASENAME, __LINE__), 1)))
| ^~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/mps.c: In function ‘row_name’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/mps.c:1128:21: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
1128 | csa->deck && strlen(csa->P->row[i]->name) > 8)
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/mps.c: In function ‘col_name’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/mps.c:1143:21: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
1143 | csa->deck && strlen(csa->P->col[j]->name) > 8)
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/mps.c: In function ‘read_field’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/mps.c:271:32: warning: ‘beg’ may be used uninitialized [-Wmaybe-uninitialized]
271 | while (csa->recpos < beg)
| ~~~~~~~~~~~~^~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/mps.c:252:14: note: ‘beg’ was declared here
252 | int beg, end, pos;
| ^~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/mps.c:288:30: warning: ‘end’ may be used uninitialized [-Wmaybe-uninitialized]
288 | for (pos = beg; pos <= end; pos++)
| ~~~~^~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/mps.c:252:19: note: ‘end’ was declared here
252 | int beg, end, pos;
| ^~~
In function ‘read_bounds’,
inlined from ‘glp_read_mps’ at /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/mps.c:986:10:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/mps.c:868:10: warning: ‘lb’ may be used uninitialized [-Wmaybe-uninitialized]
868 | if (lb == -DBL_MAX && ub == +DBL_MAX)
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/mps.c: In function ‘glp_read_mps’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/mps.c:746:19: note: ‘lb’ was declared here
746 | double bnd, lb, ub;
| ^~
In function ‘read_bounds’,
inlined from ‘glp_read_mps’ at /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/mps.c:986:10:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/mps.c:868:10: warning: ‘ub’ may be used uninitialized [-Wmaybe-uninitialized]
868 | if (lb == -DBL_MAX && ub == +DBL_MAX)
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/mps.c: In function ‘glp_read_mps’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/mps.c:746:23: note: ‘ub’ was declared here
746 | double bnd, lb, ub;
| ^~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/mps.c: In function ‘glp_write_mps’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/mps.c:1346:13: warning: ‘rhs’ may be used uninitialized [-Wmaybe-uninitialized]
1346 | if (rhs != 0.0)
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/mps.c:1330:17: note: ‘rhs’ was declared here
1330 | double rhs;
| ^~~
[ 35%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/api/netgen.c.o
[ 35%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/api/npp.c.o
[ 35%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/api/pript.c.o
[ 35%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/api/prmip.c.o
[ 35%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/api/prob1.c.o
[ 35%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/api/prob2.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/prob2.c: In function ‘glp_get_row_lb’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/prob2.c:233:14: warning: ‘lb’ may be used uninitialized [-Wmaybe-uninitialized]
233 | return lb;
| ^~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/prob2.c:219:14: note: ‘lb’ was declared here
219 | { double lb;
| ^~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/prob2.c: In function ‘glp_get_row_ub’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/prob2.c:266:14: warning: ‘ub’ may be used uninitialized [-Wmaybe-uninitialized]
266 | return ub;
| ^~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/prob2.c:252:14: note: ‘ub’ was declared here
252 | { double ub;
| ^~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/prob2.c: In function ‘glp_get_col_lb’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/prob2.c:327:14: warning: ‘lb’ may be used uninitialized [-Wmaybe-uninitialized]
327 | return lb;
| ^~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/prob2.c:312:14: note: ‘lb’ was declared here
312 | { double lb;
| ^~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/prob2.c: In function ‘glp_get_col_ub’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/prob2.c:361:14: warning: ‘ub’ may be used uninitialized [-Wmaybe-uninitialized]
361 | return ub;
| ^~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/prob2.c:346:14: note: ‘ub’ was declared here
346 | { double ub;
| ^~
[ 35%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/api/prob3.c.o
[ 35%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/api/prob4.c.o
[ 35%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/api/prob5.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/prob5.c: In function ‘glp_set_row_stat’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/prob5.c:70:31: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
70 | if (row->stat == GLP_BS && stat != GLP_BS ||
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/prob5.c: In function ‘glp_set_col_stat’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/prob5.c:124:31: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
124 | if (col->stat == GLP_BS && stat != GLP_BS ||
[ 35%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/api/prrngs.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/prrngs.c: In function ‘glp_print_ranges’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/prrngs.c:112:24: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
112 | if (pass == 1 && k > m || pass == 2 && k <= m)
| ~~~~~~~~~~^~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/prrngs.c:176:37: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
176 | else if (stat == GLP_NL && P->dir == GLP_MIN ||
In file included from /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/prrngs.c:22:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/env/env.h:246:20: warning: ‘slack’ may be used uninitialized [-Wmaybe-uninitialized]
246 | #define glp_format _glp_format
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/prrngs.c:25:18: note: in expansion of macro ‘glp_format’
25 | #define xfprintf glp_format
| ^~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/prrngs.c:241:10: note: in expansion of macro ‘xfprintf’
241 | xfprintf(fp, " %s", format(buf, k <= m ? slack : coef));
| ^~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/prrngs.c:58:22: note: ‘slack’ was declared here
58 | double lb, ub, slack, coef, prim, dual, value1, value2, coef1,
| ^~~~~
[ 35%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/api/prsol.c.o
[ 35%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/api/rdasn.c.o
[ 38%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/api/rdcc.c.o
[ 38%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/api/rdcnf.c.o
[ 38%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/api/rdipt.c.o
[ 38%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/api/rdmaxf.c.o
[ 38%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/api/rdmcf.c.o
[ 38%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/api/rdmip.c.o
[ 38%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/api/rdprob.c.o
[ 38%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/api/rdsol.c.o
[ 38%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/api/rmfgen.c.o
[ 38%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/api/strong.c.o
[ 38%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/api/topsort.c.o
[ 38%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/api/wcliqex.c.o
[ 38%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/api/weak.c.o
[ 38%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/api/wrasn.c.o
[ 38%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/api/wrcc.c.o
[ 38%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/api/wrcnf.c.o
[ 38%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/api/wript.c.o
[ 38%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/api/wrmaxf.c.o
[ 38%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/api/wrmcf.c.o
[ 38%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/api/wrmip.c.o
[ 41%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/api/wrprob.c.o
[ 41%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/api/wrsol.c.o
[ 41%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/bflib/btf.c.o
[ 41%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/bflib/btfint.c.o
[ 41%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/bflib/fhv.c.o
[ 41%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/bflib/fhvint.c.o
[ 41%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/bflib/ifu.c.o
[ 41%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/bflib/luf.c.o
[ 41%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/bflib/lufint.c.o
[ 41%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/bflib/scf.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/bflib/scf.c: In function ‘_glp_scf_update_aug’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/bflib/scf.c:507:10: warning: ‘ret’ may be used uninitialized [-Wmaybe-uninitialized]
507 | if (ret != 0)
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/bflib/scf.c:474:14: note: ‘ret’ was declared here
474 | int k, ret;
| ^~~
[ 41%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/bflib/scfint.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/bflib/scfint.c: In function ‘_glp_scfint_factorize’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/bflib/scfint.c:76:10: warning: ‘old_n0_max’ may be used uninitialized [-Wmaybe-uninitialized]
76 | if (old_n0_max < n0_max)
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/bflib/scfint.c:46:19: note: ‘old_n0_max’ was declared here
46 | int nn_max, old_n0_max, n0_max, k, ret;
| ^~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/bflib/scfint.c:76:10: warning: ‘n0_max’ may be used uninitialized [-Wmaybe-uninitialized]
76 | if (old_n0_max < n0_max)
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/bflib/scfint.c:46:31: note: ‘n0_max’ was declared here
46 | int nn_max, old_n0_max, n0_max, k, ret;
| ^~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/bflib/scfint.c:131:10: warning: ‘ret’ may be used uninitialized [-Wmaybe-uninitialized]
131 | if (ret == 0)
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/bflib/scfint.c:46:42: note: ‘ret’ was declared here
46 | int nn_max, old_n0_max, n0_max, k, ret;
| ^~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/bflib/scfint.c: In function ‘_glp_scfint_estimate’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/bflib/scfint.c:212:14: warning: ‘norm’ may be used uninitialized [-Wmaybe-uninitialized]
212 | return norm;
| ^~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/bflib/scfint.c:198:14: note: ‘norm’ was declared here
198 | double norm;
| ^~~~
[ 41%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/bflib/sgf.c.o
[ 41%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/bflib/sva.c.o
[ 41%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/colamd/colamd.c.o
[ 41%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/draft/bfd.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/bfd.c: In function ‘_glp_bfd_factorize’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/bfd.c:270:17: warning: unused variable ‘cond’ [-Wunused-variable]
270 | double cond;
| ^~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/bfd.c: In function ‘_glp_bfd_update’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/bfd.c:478:13: warning: ‘ret’ may be used uninitialized [-Wmaybe-uninitialized]
478 | switch (ret)
| ^~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/bfd.c:439:11: note: ‘ret’ was declared here
439 | int ret;
| ^~~
[ 41%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/draft/bfx.c.o
[ 41%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/draft/glpapi06.c.o
[ 41%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/draft/glpapi07.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpapi07.c: In function ‘glp_exact’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpapi07.c:437:20: warning: ‘pst’ may be used uninitialized [-Wmaybe-uninitialized]
437 | lp->pbs_stat = pst;
| ~~~~~~~~~~~~~^~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpapi07.c:262:26: note: ‘pst’ was declared here
262 | int i, j, k, type, pst, dst, ret, stat;
| ^~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpapi07.c:438:20: warning: ‘dst’ may be used uninitialized [-Wmaybe-uninitialized]
438 | lp->dbs_stat = dst;
| ~~~~~~~~~~~~~^~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpapi07.c:262:31: note: ‘dst’ was declared here
262 | int i, j, k, type, pst, dst, ret, stat;
| ^~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpapi07.c:479:13: warning: ‘stat’ may be used uninitialized [-Wmaybe-uninitialized]
479 | { glp_set_col_stat(lp, k-m, stat);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpapi07.c:262:41: note: ‘stat’ was declared here
262 | int i, j, k, type, pst, dst, ret, stat;
| ^~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpapi07.c:482:17: warning: ‘prim’ may be used uninitialized [-Wmaybe-uninitialized]
482 | sum += lp->col[k-m]->coef * prim;
| ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpapi07.c:263:22: note: ‘prim’ was declared here
263 | double lb, ub, prim, dual, sum;
| ^~~~
[ 41%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/draft/glpapi08.c.o
[ 41%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/draft/glpapi09.c.o
[ 41%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/draft/glpapi10.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpapi10.c: In function ‘glp_check_kkt’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpapi10.c:216:18: warning: ‘t’ may be used uninitialized [-Wmaybe-uninitialized]
216 | t = - t;
| ~~^~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpapi10.c:34:25: note: ‘t’ was declared here
34 | double e, sp, sn, t, ae_max, re_max;
| ^
[ 44%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/draft/glpapi12.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpapi12.c: In function ‘glp_warm_up’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpapi12.c:673:49: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
673 | if ((stat == GLP_NF || stat == GLP_NL) && temp < -1e-5 ||
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpapi12.c:697:49: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
697 | if ((stat == GLP_NF || stat == GLP_NL) && temp < -1e-5 ||
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpapi12.c: In function ‘glp_prim_rtest’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpapi12.c:1364:42: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
1364 | if (teta > temp || teta == temp && big < fabs(alfa))
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpapi12.c: In function ‘glp_dual_rtest’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpapi12.c:1498:42: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
1498 | if (teta > temp || teta == temp && big < fabs(alfa))
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpapi12.c: In function ‘glp_analyze_bound’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpapi12.c:1868:23: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
1868 | if (kase < 0 && val[piv] > 0.0 ||
| ~~~~~~~~~^~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpapi12.c: In function ‘glp_analyze_coef’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpapi12.c:2067:23: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
2067 | if (kase < 0 && rval[rpiv] > 0.0 ||
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpapi12.c:2115:25: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
2115 | if (dir < 0 && rval[rpiv] > 0.0 ||
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpapi12.c:2147:22: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
2147 | if (dir < 0 && cval[cpiv] > 0.0 ||
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpapi12.c: In function ‘glp_prim_rtest’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpapi12.c:1288:39: warning: ‘temp’ may be used uninitialized [-Wmaybe-uninitialized]
1288 | double alfa, big, beta, lb, ub, temp, teta;
| ^~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpapi12.c: In function ‘glp_dual_rtest’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpapi12.c:1430:36: warning: ‘temp’ may be used uninitialized [-Wmaybe-uninitialized]
1430 | double alfa, big, cost, obj, temp, teta;
| ^~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpapi12.c: In function ‘_glp_analyze_row’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpapi12.c:1648:13: warning: ‘dir’ may be used uninitialized [-Wmaybe-uninitialized]
1648 | piv = glp_dual_rtest(P, len, ind, val, dir, eps);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpapi12.c:1586:17: note: ‘dir’ was declared here
1586 | { int t, k, dir, piv, ret = 0;
| ^~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpapi12.c: In function ‘glp_analyze_coef’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpapi12.c:2027:17: warning: ‘dir’ may be used uninitialized [-Wmaybe-uninitialized]
2027 | rpiv = glp_dual_rtest(P, rlen, rind, rval, dir, 1e-9);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpapi12.c:1962:41: note: ‘dir’ was declared here
1962 | int m, n, type, stat, kase, p, q, dir, clen, cpiv, rlen, rpiv,
| ^~~
[ 44%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/draft/glpapi13.c.o
[ 44%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/draft/glpios01.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios01.c: In function ‘_glp_ios_eval_degrad’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios01.c:997:32: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
997 | { if (stat == GLP_NL && gamma < 0.0 ||
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios01.c:1002:32: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
1002 | { if (stat == GLP_NL && gamma > 0.0 ||
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
[ 44%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/draft/glpios02.c.o
In function ‘col_implied_bounds’,
inlined from ‘check_col_bounds’ at /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios02.c:461:7,
inlined from ‘basic_preprocessing’ at /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios02.c:676:17,
inlined from ‘_glp_ios_preprocess_node’ at /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios02.c:783:11:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios02.c:354:44: warning: ‘ilb’ may be used uninitialized [-Wmaybe-uninitialized]
354 | *uu = (ilb == -DBL_MAX ? +DBL_MAX : ilb / a[k]);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios02.c: In function ‘_glp_ios_preprocess_node’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios02.c:298:14: note: ‘ilb’ was declared here
298 | { double ilb, iub;
| ^~~
In function ‘col_implied_bounds’,
inlined from ‘check_col_bounds’ at /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios02.c:461:7,
inlined from ‘basic_preprocessing’ at /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios02.c:676:17,
inlined from ‘_glp_ios_preprocess_node’ at /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios02.c:783:11:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios02.c:353:44: warning: ‘iub’ may be used uninitialized [-Wmaybe-uninitialized]
353 | { *ll = (iub == +DBL_MAX ? -DBL_MAX : iub / a[k]);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios02.c: In function ‘_glp_ios_preprocess_node’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios02.c:298:19: note: ‘iub’ was declared here
298 | { double ilb, iub;
| ^~~
In function ‘check_col_bounds’,
inlined from ‘basic_preprocessing’ at /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios02.c:676:17,
inlined from ‘_glp_ios_preprocess_node’ at /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios02.c:783:11:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios02.c:464:13: warning: ‘ll’ may be used uninitialized [-Wmaybe-uninitialized]
464 | { if (ll != -DBL_MAX)
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios02.c: In function ‘_glp_ios_preprocess_node’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios02.c:456:22: note: ‘ll’ was declared here
456 | double lj, uj, ll, uu;
| ^~
In function ‘check_col_bounds’,
inlined from ‘basic_preprocessing’ at /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios02.c:676:17,
inlined from ‘_glp_ios_preprocess_node’ at /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios02.c:783:11:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios02.c:466:13: warning: ‘uu’ may be used uninitialized [-Wmaybe-uninitialized]
466 | if (uu != +DBL_MAX)
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios02.c: In function ‘_glp_ios_preprocess_node’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios02.c:456:26: note: ‘uu’ was declared here
456 | double lj, uj, ll, uu;
| ^~
[ 44%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/draft/glpios03.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios03.c: In function ‘generate_cuts’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios03.c:787:37: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
787 | { if (T->curr->level == 0 && T->curr->changed < 500 ||
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios03.c: In function ‘_glp_ios_driver’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios03.c:1043:42: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
1043 | T->parm->msg_lev >= GLP_MSG_ON &&
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
1044 | (double)(T->parm->out_frq - 1) <=
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1045 | 1000.0 * xdifftime(xtime(), T->tm_lag))
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios03.c:22:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios03.c: In function ‘show_progress’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/env/env.h:145:17: warning: ‘rho’ may be used uninitialized [-Wmaybe-uninitialized]
145 | #define xprintf glp_printf
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios03.c:95:7: note: in expansion of macro ‘xprintf’
95 | xprintf("+%6d: %s %s %s %s %s (%d; %d)\n",
| ^~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios03.c:53:43: note: ‘rho’ was declared here
53 | char best_mip[50], best_bound[50], *rho, rel_gap[50];
| ^~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios03.c: In function ‘_glp_ios_driver’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios03.c:1362:37: warning: ‘old_obj’ may be used uninitialized [-Wmaybe-uninitialized]
1362 | if (degrad < 1e-4 * (1.0 + fabs(old_obj)))
| ^~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios03.c:907:14: note: ‘old_obj’ was declared here
907 | double old_obj;
| ^~~~~~~
In function ‘branch_on’,
inlined from ‘_glp_ios_driver’ at /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios03.c:1445:13:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios03.c:479:27: warning: ‘dn_type’ may be used uninitialized [-Wmaybe-uninitialized]
479 | node->b_ptr->type = (unsigned char)dn_type;
| ^~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios03.c: In function ‘_glp_ios_driver’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios03.c:367:17: note: ‘dn_type’ was declared here
367 | int type, dn_type, up_type, dn_bad, up_bad, p, ret, clone[1+2];
| ^~~~~~~
In function ‘branch_on’,
inlined from ‘_glp_ios_driver’ at /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios03.c:1445:13:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios03.c:501:27: warning: ‘up_type’ may be used uninitialized [-Wmaybe-uninitialized]
501 | node->b_ptr->type = (unsigned char)up_type;
| ^~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios03.c: In function ‘_glp_ios_driver’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios03.c:367:26: note: ‘up_type’ was declared here
367 | int type, dn_type, up_type, dn_bad, up_bad, p, ret, clone[1+2];
| ^~~~~~~
[ 44%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/draft/glpios07.c.o
[ 44%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/draft/glpios09.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios09.c: In function ‘branch_drtom’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios09.c:296:38: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
296 | if (stat == GLP_NL && dk < 0.0 ||
| ~~~~~~~~~~~~~~~^~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios09.c:301:38: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
301 | if (stat == GLP_NL && dk > 0.0 ||
| ~~~~~~~~~~~~~~~^~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios09.c: In function ‘eval_degrad’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios09.c:464:16: warning: ‘degrad’ may be used uninitialized [-Wmaybe-uninitialized]
464 | if (degrad < 1e-6 * (1.0 + 0.001 * fabs(P->obj_val)))
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios09.c:430:14: note: ‘degrad’ was declared here
430 | double degrad;
| ^~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios09.c: In function ‘_glp_ios_pcost_branch’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios09.c:657:14: warning: ‘sel’ may be used uninitialized [-Wmaybe-uninitialized]
657 | done: *_next = sel;
| ~~~~~~~^~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios09.c:602:19: note: ‘sel’ was declared here
602 | int j, jjj, sel;
| ^~~
In function ‘branch_drtom’,
inlined from ‘_glp_ios_choose_var’ at /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios09.c:66:14:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios09.c:370:14: warning: ‘dd_dn’ may be used uninitialized [-Wmaybe-uninitialized]
370 | if (fabs(dd_dn) == DBL_MAX)
| ^~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios09.c: In function ‘_glp_ios_choose_var’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios09.c:198:10: note: ‘dd_dn’ was declared here
198 | dd_dn, dd_up, degrad, *val;
| ^~~~~
In function ‘branch_drtom’,
inlined from ‘_glp_ios_choose_var’ at /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios09.c:66:14:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios09.c:375:14: warning: ‘dd_up’ may be used uninitialized [-Wmaybe-uninitialized]
375 | if (fabs(dd_up) == DBL_MAX)
| ^~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios09.c: In function ‘_glp_ios_choose_var’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios09.c:198:17: note: ‘dd_up’ was declared here
198 | dd_dn, dd_up, degrad, *val;
| ^~~~~
In function ‘branch_drtom’,
inlined from ‘_glp_ios_choose_var’ at /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios09.c:66:14:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios09.c:381:14: warning: ‘next’ may be used uninitialized [-Wmaybe-uninitialized]
381 | done: *_next = next;
| ~~~~~~~^~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios09.c: In function ‘_glp_ios_choose_var’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios09.c:145:18: note: ‘next’ was declared here
145 | { int j, jj, next;
| ^~~~
In function ‘branch_mostf’,
inlined from ‘_glp_ios_choose_var’ at /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios09.c:62:14:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios09.c:162:14: warning: ‘next’ may be used uninitialized [-Wmaybe-uninitialized]
162 | *_next = next;
| ~~~~~~~^~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios09.c: In function ‘_glp_ios_choose_var’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios09.c:145:18: note: ‘next’ was declared here
145 | { int j, jj, next;
| ^~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios09.c:74:14: warning: ‘j’ may be used uninitialized [-Wmaybe-uninitialized]
74 | return j;
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios09.c:51:11: note: ‘j’ was declared here
51 | { int j;
| ^
[ 44%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/draft/glpios11.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios11.c: In function ‘_glp_ios_process_cuts’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios11.c:128:16: warning: ‘rhs’ may be used uninitialized [-Wmaybe-uninitialized]
128 | ret = _glp_analyze_row(T->mip, len, ind, val, cut->type,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
129 | rhs, 1e-9, NULL, NULL, NULL, NULL, &dy, &dz);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios11.c:88:27: note: ‘rhs’ was declared here
88 | double *val, *work, rhs;
| ^~~
[ 44%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/draft/glpios12.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios12.c: In function ‘_glp_ios_choose_node’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios12.c:78:14: warning: ‘p’ may be used uninitialized [-Wmaybe-uninitialized]
78 | return p;
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios12.c:51:11: note: ‘p’ was declared here
51 | { int p;
| ^
[ 44%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/draft/glpipm.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpipm.c: In function ‘_glp_ipm_solve’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpipm.c:1064:18: warning: ‘dir’ may be used uninitialized [-Wmaybe-uninitialized]
1064 | c[0] = dir * P->c0;
| ~~~~^~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpipm.c:1030:14: note: ‘dir’ was declared here
1030 | double dir, *A_val, *b, *c, *x, *y, *z;
| ^~~
[ 44%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/draft/glpmat.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpmat.c: In function ‘_glp_mat_amd_order1’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpmat.c:515:7: warning: ‘memset’ specified bound between 18446744065119617024 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=]
515 | memset(&P_per[n+1], 0, n * sizeof(int));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpmat.c: In function ‘_glp_mat_symamd_ord’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpmat.c:557:7: warning: ‘memset’ specified bound between 18446744065119617024 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=]
557 | memset(&P_per[n+1], 0, n * sizeof(int));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 44%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/draft/glpscl.c.o
[ 44%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/draft/glpssx01.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpssx01.c: In function ‘_glp_ssx_chuzc’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpssx01.c:469:55: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
469 | if ((stat[k] == SSX_NF || stat[k] == SSX_NL) && s < 0 ||
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
In file included from /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpssx01.c:22:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpssx01.c: In function ‘_glp_ssx_change_basis’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpssx01.c:787:67: warning: left-hand operand of comma expression has no effect [-Wunused-value]
787 | xassert(("Internal error: basis matrix is singular", 0));
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/env/env.h:175:16: note: in definition of macro ‘xassert’
175 | ((void)((expr) || (glp_assert_(#expr, IGRAPH_FILE_BASENAME, __LINE__), 1)))
| ^~~~
[ 44%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/draft/glpssx02.c.o
[ 44%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/draft/lux.c.o
[ 44%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/env/alloc.c.o
[ 44%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/env/dlsup.c.o
[ 44%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/env/env.c.o
[ 44%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/env/error.c.o
[ 44%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/env/stdc.c.o
[ 47%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/env/stdout.c.o
[ 47%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/env/stream.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/env/stream.c: In function ‘_glp_open’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/env/stream.c:103:15: warning: ‘flag’ may be used uninitialized [-Wmaybe-uninitialized]
103 | { flag |= IONULL;
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/env/stream.c:90:11: note: ‘flag’ was declared here
90 | int flag;
| ^~~~
[ 47%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/env/time.c.o
[ 47%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/env/tls.c.o
[ 47%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/intopt/cfg.c.o
[ 47%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/intopt/cfg1.c.o
In function ‘build_subgraph’,
inlined from ‘_glp_cfg_find_clique’ at /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/intopt/cfg1.c:655:7:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/intopt/cfg1.c:490:13: warning: ‘z’ may be used uninitialized [-Wmaybe-uninitialized]
490 | if (z < 0.001)
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/intopt/cfg1.c: In function ‘_glp_cfg_find_clique’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/intopt/cfg1.c:469:14: note: ‘z’ was declared here
469 | double z, sum;
| ^
[ 47%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/intopt/cfg2.c.o
[ 47%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/intopt/clqcut.c.o
[ 47%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/intopt/covgen.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/intopt/covgen.c: In function ‘check_vb.isra’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/intopt/covgen.c:160:16: warning: ‘rhs’ may be used uninitialized [-Wmaybe-uninitialized]
160 | *b = rhs / a1->val;
| ~~~~^~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/intopt/covgen.c:108:14: note: ‘rhs’ was declared here
108 | double rhs;
| ^~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/intopt/covgen.c:161:14: warning: ‘type’ may be used uninitialized [-Wmaybe-uninitialized]
161 | return type;
| ^~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/intopt/covgen.c:107:11: note: ‘type’ was declared here
107 | int type;
| ^~~~
[ 47%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/intopt/fpump.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/intopt/fpump.c: In function ‘_glp_ios_feas_pump’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/intopt/fpump.c:224:24: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
224 | { if (k >= 5 && var[k].d < 0.35 || k >= 10) break;
| ~~~~~~~^~~~~~~~~~~~~~~~~~
[ 47%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/intopt/gmicut.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/intopt/gmicut.c: In function ‘glp_gmi_cut’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/intopt/gmicut.c:214:19: warning: ‘alfa’ may be used uninitialized [-Wmaybe-uninitialized]
214 | if (alfa >= 0.0)
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/intopt/gmicut.c:106:22: note: ‘alfa’ was declared here
106 | double lb, ub, alfa, beta, ksi, phi1, rhs;
| ^~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/intopt/gmicut.c:228:20: warning: ‘phi1’ may be used uninitialized [-Wmaybe-uninitialized]
228 | rhs += phi1 * lb;
| ~~~~^~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/intopt/gmicut.c:106:39: note: ‘phi1’ was declared here
106 | double lb, ub, alfa, beta, ksi, phi1, rhs;
| ^~~~
[ 47%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/intopt/gmigen.c.o
[ 47%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/intopt/mirgen.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/intopt/mirgen.c: In function ‘set_var_bounds’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/intopt/mirgen.c:215:34: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
215 | if (!(mir->lb[i] == 0.0 && mir->ub[i] == +DBL_MAX ||
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/intopt/mirgen.c: In function ‘mark_useless_rows’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/intopt/mirgen.c:290:31: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
290 | if (mir->isint[k] && mir->lb[k] == -DBL_MAX ||
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/intopt/mirgen.c: In function ‘glp_mir_gen’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/intopt/mirgen.c:974:17: warning: ‘x’ may be used uninitialized [-Wmaybe-uninitialized]
974 | { double x;
| ^
[ 47%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/intopt/spv.c.o
[ 47%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/minisat/minisat.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/minisat/minisat.c: In function ‘act_clause_rescale’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/minisat/minisat.c:139:8: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
139 | (*((float*)&(c)->lits[(c)->size_learnt>>1]))
| ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/minisat/minisat.c:316:19: note: in expansion of macro ‘clause_activity’
316 | float a = clause_activity(cs[i]);
| ^~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/minisat/minisat.c:142:14: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
142 | (void)(*((float*)&(c)->lits[(c)->size_learnt>>1]) = (a))
| ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/minisat/minisat.c:317:9: note: in expansion of macro ‘clause_setactivity’
317 | clause_setactivity(cs[i], a * (float)1e-20);
| ^~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/minisat/minisat.c: In function ‘act_clause_bump’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/minisat/minisat.c:139:8: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
139 | (*((float*)&(c)->lits[(c)->size_learnt>>1]))
| ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/minisat/minisat.c:323:15: note: in expansion of macro ‘clause_activity’
323 | float a = clause_activity(c) + s->cla_inc;
| ^~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/minisat/minisat.c:142:14: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
142 | (void)(*((float*)&(c)->lits[(c)->size_learnt>>1]) = (a))
| ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/minisat/minisat.c:324:5: note: in expansion of macro ‘clause_setactivity’
324 | clause_setactivity(c,a);
| ^~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/minisat/minisat.c: In function ‘clause_new’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/minisat/minisat.c:359:11: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
359 | *((float*)&c->lits[size]) = 0.0;
| ~^~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/minisat/minisat.c: In function ‘clause_cmp’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/minisat/minisat.c:139:8: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
139 | (*((float*)&(c)->lits[(c)->size_learnt>>1]))
| ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/minisat/minisat.c:855:19: note: in expansion of macro ‘clause_activity’
855 | || clause_activity((clause*)x)
| ^~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/minisat/minisat.c:139:8: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
139 | (*((float*)&(c)->lits[(c)->size_learnt>>1]))
| ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/minisat/minisat.c:856:21: note: in expansion of macro ‘clause_activity’
856 | < clause_activity((clause*)y)) ? -1 : 1; }
| ^~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/minisat/minisat.c: In function ‘_glp_minisat_reducedb’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/minisat/minisat.c:139:8: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
139 | (*((float*)&(c)->lits[(c)->size_learnt>>1]))
| ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/minisat/minisat.c:880:16: note: in expansion of macro ‘clause_activity’
880 | && clause_activity(learnts[i]) < extra_lim)
| ^~~~~~~~~~~~~~~
[ 47%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/misc/avl.c.o
[ 47%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/misc/bignum.c.o
[ 47%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/misc/dimacs.c.o
[ 47%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/misc/dmp.c.o
[ 47%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/misc/ffalg.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/misc/ffalg.c: In function ‘_glp_ffalg’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/misc/ffalg.c:156:17: warning: ‘j’ may be used uninitialized [-Wmaybe-uninitialized]
156 | link[j] = a, list[++pos2] = j;
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/misc/ffalg.c:76:24: note: ‘j’ was declared here
76 | { int a, delta, i, j, k, pos1, pos2, temp,
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/misc/ffalg.c:190:34: warning: ‘temp’ may be used uninitialized [-Wmaybe-uninitialized]
190 | if (delta == 0 || delta > temp) delta = temp;
| ~~~~~~^~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/misc/ffalg.c:76:42: note: ‘temp’ was declared here
76 | { int a, delta, i, j, k, pos1, pos2, temp,
| ^~~~
[ 47%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/misc/fp2rat.c.o
[ 50%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/misc/fvs.c.o
[ 50%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/misc/gcd.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/misc/gcd.c: In function ‘_glp_gcdn’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/misc/gcd.c:97:14: warning: ‘d’ may be used uninitialized [-Wmaybe-uninitialized]
97 | return d;
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/misc/gcd.c:86:11: note: ‘d’ was declared here
86 | { int d, j;
| ^
[ 50%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/misc/hbm.c.o
[ 50%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/misc/jd.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/misc/jd.c: In function ‘_glp_jday’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/misc/jd.c:71:10: warning: ‘dd’ may be used uninitialized [-Wmaybe-uninitialized]
71 | if (d != dd)
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/misc/jd.c:57:21: note: ‘dd’ was declared here
57 | { int c, ya, j, dd;
| ^~
[ 50%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/misc/keller.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/misc/keller.c: In function ‘_glp_kellerman’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/misc/keller.c:107:7: warning: ‘memset’ specified bound between 18446744065119617024 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=]
107 | memset(&W->pos[1], 0, sizeof(int) * n);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/misc/keller.c:112:7: warning: ‘memset’ specified bound between 18446744065119617024 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=]
112 | memset(&V->pos[1], 0, sizeof(int) * n);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 50%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/misc/ks.c.o
[ 50%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/misc/mc13d.c.o
[ 50%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/misc/mc21a.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/misc/mc21a.c: In function ‘_glp_mc21a’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/misc/mc21a.c:154:23: warning: ‘ii’ may be used uninitialized [-Wmaybe-uninitialized]
154 | arp[j] = in2 - ii - 1;
| ~~~~^~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/misc/mc21a.c:97:14: note: ‘ii’ was declared here
97 | { int i, ii, in1, in2, j, j1, jord, k, kk, numnz;
| ^~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/misc/mc21a.c:154:23: warning: ‘in2’ may be used uninitialized [-Wmaybe-uninitialized]
154 | arp[j] = in2 - ii - 1;
| ~~~~^~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/misc/mc21a.c:97:23: note: ‘in2’ was declared here
97 | { int i, ii, in1, in2, j, j1, jord, k, kk, numnz;
| ^~~
[ 50%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/misc/mt1.c.o
[ 50%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/misc/mygmp.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/misc/mygmp.c: In function ‘_glp_mpz_add’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/misc/mygmp.c:282:37: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
282 | if (!(xval > 0 && yval > 0 && zval <= 0 ||
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/misc/mygmp.c:335:18: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
335 | if (sx > 0 && sy > 0 || sx < 0 && sy < 0)
| ~~~~~~~^~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/misc/mygmp.c: In function ‘_glp_mpz_cmp’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/misc/mygmp.c:802:22: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
802 | if (x->val > 0 && y->val <= 0 || x->val == 0 && y->val < 0)
| ~~~~~~~~~~~^~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/misc/mygmp.c:806:22: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
806 | if (x->val < 0 && y->val >= 0 || x->val == 0 && y->val > 0)
| ~~~~~~~~~~~^~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/misc/mygmp.c:32:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/misc/mygmp.c:855:22: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
855 | xassert(sx > 0 && sy > 0 || sx < 0 && sy < 0);
| ~~~~~~~^~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/env/env.h:175:16: note: in definition of macro ‘xassert’
175 | ((void)((expr) || (glp_assert_(#expr, IGRAPH_FILE_BASENAME, __LINE__), 1)))
| ^~~~
[ 50%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/misc/okalg.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/misc/okalg.c: In function ‘_glp_okalg’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/misc/okalg.c:345:34: warning: ‘temp’ may be used uninitialized [-Wmaybe-uninitialized]
345 | if (delta == 0 || delta > temp) delta = temp;
| ~~~~~~^~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/misc/okalg.c:100:61: note: ‘temp’ was declared here
100 | { int a, aok, delta, i, j, k, lambda, pos1, pos2, s, t, temp, ret,
| ^~~~
[ 50%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/misc/qmd.c.o
[ 50%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/misc/relax4.c.o
[ 50%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/misc/rgr.c.o
[ 50%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/misc/rng.c.o
[ 50%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/misc/rng1.c.o
[ 50%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/misc/round2n.c.o
[ 50%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/misc/spm.c.o
[ 50%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/misc/str2int.c.o
[ 50%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/misc/str2num.c.o
[ 52%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/misc/strspx.c.o
[ 52%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/misc/strtrim.c.o
[ 52%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/misc/triang.c.o
[ 52%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/misc/wclique.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/misc/wclique.c: In function ‘_glp_wclique’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/misc/wclique.c:205:17: warning: ‘p’ may be used uninitialized [-Wmaybe-uninitialized]
205 | pos[i] = p;
| ~~~~~~~^~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/misc/wclique.c:170:17: note: ‘p’ was declared here
170 | int i, j, p, max_wt, max_nwt, wth, *used, *nwt, *pos;
| ^
[ 52%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/misc/wclique1.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/misc/wclique1.c: In function ‘_glp_wclique1’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/misc/wclique1.c:111:7: warning: ‘memset’ specified bound between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=]
111 | memset(&skip[1], 0, sizeof(char) * n);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/misc/wclique1.c:113:7: warning: ‘memset’ specified bound between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=]
113 | memset(&d_flag[1], 0, sizeof(char) * n);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 52%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/mpl/mpl1.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c: In function ‘_glp_mpl_is_reserved’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c:469:30: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
469 | mpl->token == T_AND && mpl->image[0] == 'a' ||
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c:480:30: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
480 | mpl->token == T_NOT && mpl->image[0] == 'n' ||
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c:481:29: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
481 | mpl->token == T_OR && mpl->image[0] == 'o' ||
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c: In function ‘_glp_mpl_expand_arg_list’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c:851:10: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
851 | { for (temp = list; temp->next != NULL; temp = temp->next);
| ^~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c:852:10: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
852 | temp->next = tail;
| ^~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c: In function ‘_glp_mpl_append_block’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c:1452:10: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
1452 | { for (temp = domain->list; temp->next != NULL; temp =
| ^~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c:1454:10: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
1454 | temp->next = block;
| ^~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c: In function ‘_glp_mpl_append_slot’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c:1486:10: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
1486 | { for (temp = block->list; temp->next != NULL; temp =
| ^~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c:1488:10: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
1488 | temp->next = slot;
| ^~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c: In function ‘_glp_mpl_iterated_expression’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c:1984:31: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
1984 | op == O_SUM && arg.loop.x->type == A_FORMULA))
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c: In function ‘_glp_mpl_set_statement’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c:3040:16: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
3040 | { for (temp = set->within; temp->next != NULL; temp =
| ^~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c:3042:16: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
3042 | temp->next = within;
| ^~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c: In function ‘_glp_mpl_parameter_statement’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c:3325:16: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
3325 | { for (temp = par->cond; temp->next != NULL; temp =
| ^~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c:3327:16: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
3327 | temp->next = cond;
| ^~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c:3368:16: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
3368 | { for (temp = par->in; temp->next != NULL; temp =
| ^~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c:3370:16: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
3370 | temp->next = in;
| ^~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c: In function ‘_glp_mpl_end_statement’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c:4570:24: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
4570 | { if (!mpl->flag_d && is_keyword(mpl, "end") ||
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c: In function ‘_glp_mpl_primary_expression’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c:2257:14: warning: ‘code’ may be used uninitialized [-Wmaybe-uninitialized]
2257 | return code;
| ^~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c:2196:13: note: ‘code’ was declared here
2196 | { CODE *code;
| ^~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c: In function ‘_glp_mpl_object_reference’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c:1037:34: warning: ‘slot’ may be used uninitialized [-Wmaybe-uninitialized]
1037 | arg.index.next = slot->list;
| ~~~~^~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c:933:20: note: ‘slot’ was declared here
933 | DOMAIN_SLOT *slot;
| ^~~~
In file included from /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c:22:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl.h:373:19: warning: ‘set’ may be used uninitialized [-Wmaybe-uninitialized]
373 | #define make_code _glp_mpl_make_code
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c:1044:20: note: in expansion of macro ‘make_code’
1044 | code = make_code(mpl, O_MEMSET, &arg, A_ELEMSET,
| ^~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c:934:12: note: ‘set’ was declared here
934 | SET *set;
| ^~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c:1050:20: warning: ‘par’ may be used uninitialized [-Wmaybe-uninitialized]
1050 | if (par->type == A_SYMBOLIC)
| ~~~^~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c:935:18: note: ‘par’ was declared here
935 | PARAMETER *par;
| ^~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl.h:2494:15: warning: ‘var’ may be used uninitialized [-Wmaybe-uninitialized]
2494 | #define error _glp_mpl_error
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c:1058:16: note: in expansion of macro ‘error’
1058 | error(mpl, "invalid reference to status, primal value, o"
| ^~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c:936:17: note: ‘var’ was declared here
936 | VARIABLE *var;
| ^~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c:1072:22: warning: ‘con’ may be used uninitialized [-Wmaybe-uninitialized]
1072 | con->type == A_CONSTRAINT ? "constraint" : "objective"
| ~~~^~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c:937:19: note: ‘con’ was declared here
937 | CONSTRAINT *con;
| ^~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl.h:2494:15: warning: ‘name’ may be used uninitialized [-Wmaybe-uninitialized]
2494 | #define error _glp_mpl_error
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c:1004:13: note: in expansion of macro ‘error’
1004 | error(mpl, "%s must be subscripted", name);
| ^~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c:941:13: note: ‘name’ was declared here
941 | char *name;
| ^~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c:1003:13: warning: ‘dim’ may be used uninitialized [-Wmaybe-uninitialized]
1003 | if (dim != 0)
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c:942:11: note: ‘dim’ was declared here
942 | int dim, suff;
| ^~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c:1082:14: warning: ‘code’ may be used uninitialized [-Wmaybe-uninitialized]
1082 | return code;
| ^~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c:940:13: note: ‘code’ was declared here
940 | CODE *code;
| ^~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c: In function ‘_glp_mpl_iterated_expression’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c:1971:7: warning: ‘op’ may be used uninitialized [-Wmaybe-uninitialized]
1971 | switch (op)
| ^~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c:1943:11: note: ‘op’ was declared here
1943 | int op;
| ^~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c: In function ‘_glp_mpl_function_reference’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c:1240:23: warning: ‘op’ may be used uninitialized [-Wmaybe-uninitialized]
1240 | if (op == O_MIN || op == O_MAX)
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c:1174:11: note: ‘op’ was declared here
1174 | int op;
| ^~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c: In function ‘_glp_mpl_objective_statement’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c:3873:17: warning: ‘type’ may be used uninitialized [-Wmaybe-uninitialized]
3873 | obj->type = type;
| ~~~~~~~~~~^~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl1.c:3846:11: note: ‘type’ was declared here
3846 | int type;
| ^~~~
[ 52%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/mpl/mpl2.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl2.c: In function ‘_glp_mpl_expand_slice’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl2.c:60:10: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
60 | { for (temp = slice; temp->next != NULL; temp = temp->next);
| ^~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl2.c:61:10: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
61 | temp->next = tail;
| ^~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl2.c: In function ‘_glp_mpl_read_slice’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl2.c:258:18: warning: ‘close’ may be used uninitialized [-Wmaybe-uninitialized]
258 | else if (mpl->token == close)
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl2.c:226:11: note: ‘close’ was declared here
226 | int close;
| ^~~~~
[ 52%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/mpl/mpl3.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c: In function ‘_glp_mpl_fp_add’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:34:30: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
34 | { if (x > 0.0 && y > 0.0 && x > + 0.999 * DBL_MAX - y ||
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c: In function ‘_glp_mpl_fp_sub’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:47:30: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
47 | { if (x > 0.0 && y < 0.0 && x > + 0.999 * DBL_MAX + y ||
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c: In function ‘_glp_mpl_fp_mod’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:128:25: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
128 | if (x > 0.0 && y < 0.0 || x < 0.0 && y > 0.0) r += y;
| ~~~~~~~~^~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c: In function ‘_glp_mpl_fp_power’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:141:20: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
141 | if (x == 0.0 && y <= 0.0 || x < 0.0 && y != floor(y))
| ~~~~~~~~~^~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:145:37: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
145 | if (fabs(x) > 1.0 && y > +1.0 &&
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~
146 | +log(fabs(x)) > (0.999 * log(DBL_MAX)) / y ||
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:151:37: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
151 | if (fabs(x) > 1.0 && y < -1.0 &&
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~
152 | -log(fabs(x)) < (0.999 * log(DBL_MAX)) / y ||
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c: In function ‘_glp_mpl_expand_tuple’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:782:10: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
782 | { for (temp = tuple; temp->next != NULL; temp = temp->next);
| ^~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:783:10: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
783 | temp->next = tail;
| ^~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c: In function ‘_glp_mpl_arelset_size’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:1084:25: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
1084 | { if (temp > 0.0 && dt > 0.0 || temp < 0.0 && dt < 0.0)
| ~~~~~~~~~~~^~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c: In function ‘_glp_mpl_is_member’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:4601:29: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
4601 | if (dt > 0.0 && !(t0 <= x && x <= tf) ||
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In function ‘_glp_mpl_copy_formula’,
inlined from ‘_glp_mpl_eval_formula’ at /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:4816:26:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:1383:10: warning: ‘value’ may be used uninitialized [-Wmaybe-uninitialized]
1383 | if (form == NULL)
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c: In function ‘_glp_mpl_eval_formula’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:4701:16: note: ‘value’ was declared here
4701 | { FORMULA *value;
| ^~~~~
In file included from /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:22:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c: In function ‘_glp_mpl_eval_symbolic’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl.h:961:21: warning: ‘value’ may be used uninitialized [-Wmaybe-uninitialized]
961 | #define copy_symbol _glp_mpl_copy_symbol
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:4030:25: note: in expansion of macro ‘copy_symbol’
4030 | code->value.sym = copy_symbol(mpl, value);
| ^~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:3915:15: note: ‘value’ was declared here
3915 | { SYMBOL *value;
| ^~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c: In function ‘_glp_mpl_eval_tuple’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl.h:1030:20: warning: ‘value’ may be used uninitialized [-Wmaybe-uninitialized]
1030 | #define copy_tuple _glp_mpl_copy_tuple
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:4329:27: note: in expansion of macro ‘copy_tuple’
4329 | code->value.tuple = copy_tuple(mpl, value);
| ^~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:4292:14: note: ‘value’ was declared here
4292 | { TUPLE *value;
| ^~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c: In function ‘_glp_mpl_eval_elemset’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl.h:1110:22: warning: ‘value’ may be used uninitialized [-Wmaybe-uninitialized]
1110 | #define copy_elemset _glp_mpl_copy_elemset
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:4485:25: note: in expansion of macro ‘copy_elemset’
4485 | code->value.set = copy_elemset(mpl, value);
| ^~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:4376:16: note: ‘value’ was declared here
4376 | { ELEMSET *value;
| ^~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c: In function ‘_glp_mpl_take_member_set’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:2393:14: warning: ‘refer’ may be used uninitialized [-Wmaybe-uninitialized]
2393 | return refer;
| ^~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:2367:16: note: ‘refer’ was declared here
2367 | ELEMSET *refer;
| ^~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c: In function ‘_glp_mpl_is_member’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:4640:14: warning: ‘value’ may be used uninitialized [-Wmaybe-uninitialized]
4640 | return value;
| ^~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:4506:11: note: ‘value’ was declared here
4506 | { int value;
| ^~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c: In function ‘_glp_mpl_eval_logical’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:4281:23: warning: ‘value’ may be used uninitialized [-Wmaybe-uninitialized]
4281 | code->value.bit = value;
| ~~~~~~~~~~~~~~~~^~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:4071:11: note: ‘value’ was declared here
4071 | { int value;
| ^~~~~
In function ‘eval_set_func’,
inlined from ‘eval_set_func’ at /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:2418:13:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:2428:22: warning: ‘refer’ may be used uninitialized [-Wmaybe-uninitialized]
2428 | info->refer = take_member_set(mpl, info->set, info->tuple);
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c: In function ‘eval_set_func’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:2367:16: note: ‘refer’ was declared here
2367 | ELEMSET *refer;
| ^~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c: In function ‘_glp_mpl_take_member_sym’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:2962:14: warning: ‘value’ may be used uninitialized [-Wmaybe-uninitialized]
2962 | return value;
| ^~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:2931:15: note: ‘value’ was declared here
2931 | SYMBOL *value;
| ^~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c: In function ‘printf_func’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:5830:22: warning: ‘value’ may be used uninitialized [-Wmaybe-uninitialized]
5830 | if (!(-int_max <= value && value <= +int_max))
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:5805:23: note: ‘value’ was declared here
5805 | double value;
| ^~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c: In function ‘_glp_mpl_take_member_num’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:2727:14: warning: ‘value’ may be used uninitialized [-Wmaybe-uninitialized]
2727 | return value;
| ^~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:2693:14: note: ‘value’ was declared here
2693 | double value;
| ^~~~~
In function ‘eval_num_func’,
inlined from ‘eval_num_func’ at /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:2752:13:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:2762:22: warning: ‘value’ may be used uninitialized [-Wmaybe-uninitialized]
2762 | info->value = take_member_num(mpl, info->par, info->tuple);
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c: In function ‘eval_num_func’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl3.c:2693:14: note: ‘value’ was declared here
2693 | double value;
| ^~~~~
[ 52%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/mpl/mpl4.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl4.c: In function ‘_glp_mpl_get_row_kind’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl4.c:922:14: warning: ‘kind’ may be used uninitialized [-Wmaybe-uninitialized]
922 | return kind;
| ^~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl4.c:906:11: note: ‘kind’ was declared here
906 | { int kind;
| ^~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl4.c: In function ‘_glp_mpl_get_col_kind’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl4.c:1158:14: warning: ‘kind’ may be used uninitialized [-Wmaybe-uninitialized]
1158 | return kind;
| ^~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl4.c:1142:11: note: ‘kind’ was declared here
1142 | { int kind;
| ^~~~
[ 52%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/mpl/mpl5.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl5.c: In function ‘_glp_mpl_fn_str2time’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl5.c:215:20: warning: ‘z’ may be used uninitialized [-Wmaybe-uninitialized]
215 | int z, hh, mm;
| ^
[ 52%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/mpl/mpl6.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl6.c: In function ‘_glp_mpl_tab_drv_read’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl6.c:979:10: warning: ‘ret’ may be used uninitialized [-Wmaybe-uninitialized]
979 | if (ret > 0)
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl6.c:962:11: note: ‘ret’ was declared here
962 | int ret;
| ^~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl6.c: In function ‘_glp_mpl_tab_drv_write’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl6.c:1004:10: warning: ‘ret’ may be used uninitialized [-Wmaybe-uninitialized]
1004 | if (ret)
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl6.c:987:11: note: ‘ret’ was declared here
987 | int ret;
| ^~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl6.c: In function ‘_glp_mpl_tab_drv_close’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl6.c:1031:10: warning: ‘ret’ may be used uninitialized [-Wmaybe-uninitialized]
1031 | if (ret)
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl6.c:1012:11: note: ‘ret’ was declared here
1012 | int ret;
| ^~~
[ 52%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/mpl/mplsql.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mplsql.c:41:14: warning: ‘db_iodbc_open_int’ declared ‘static’ but never defined [-Wunused-function]
41 | static void *db_iodbc_open_int(TABDCA *dca, int mode, const char
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mplsql.c:43:14: warning: ‘db_mysql_open_int’ declared ‘static’ but never defined [-Wunused-function]
43 | static void *db_mysql_open_int(TABDCA *dca, int mode, const char
| ^~~~~~~~~~~~~~~~~
[ 52%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/npp/npp1.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/npp/npp1.c: In function ‘_glp_npp_load_prob’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/npp/npp1.c:382:21: warning: ‘dir’ may be used uninitialized [-Wmaybe-uninitialized]
382 | npp->c0 = dir * orig->c0;
| ~~~~^~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/npp/npp1.c:359:14: note: ‘dir’ was declared here
359 | double dir;
| ^~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/npp/npp1.c: In function ‘_glp_npp_build_prob’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/npp/npp1.c:502:7: warning: ‘dir’ may be used uninitialized [-Wmaybe-uninitialized]
502 | glp_set_obj_coef(prob, 0, dir * npp->c0);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/npp/npp1.c:491:14: note: ‘dir’ was declared here
491 | double dir, *val;
| ^~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/npp/npp1.c: In function ‘_glp_npp_postprocess’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/npp/npp1.c:664:32: warning: ‘dir’ may be used uninitialized [-Wmaybe-uninitialized]
664 | npp->r_pi[k] = dir * row->dval;
| ~~~~^~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/npp/npp1.c:577:14: note: ‘dir’ was declared here
577 | double dir;
| ^~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/npp/npp1.c: In function ‘_glp_npp_unload_sol’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/npp/npp1.c:824:32: warning: ‘dir’ may be used uninitialized [-Wmaybe-uninitialized]
824 | row->dval = dir * npp->r_pi[i];
| ~~~~^~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/npp/npp1.c:704:14: note: ‘dir’ was declared here
704 | double dir;
| ^~~
[ 52%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/npp/npp2.c.o
[ 52%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/npp/npp3.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/npp/npp3.c: In function ‘rcv_ineq_singlet’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/npp/npp3.c:1017:36: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
1017 | { if (info->apq > 0.0 && info->lb != -DBL_MAX ||
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/npp/npp3.c:1028:36: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
1028 | { if (info->apq > 0.0 && info->ub != +DBL_MAX ||
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/npp/npp3.c:1079:36: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
1079 | if (lambda > +DBL_EPSILON && info->lb_changed ||
| ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/npp/npp3.c: In function ‘_glp_npp_forcing_row’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/npp/npp3.c:2144:22: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
2144 | if (at == 0 && apj->val < 0.0 || at != 0 && apj->val > 0.0)
| ~~~~~~~~^~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/npp/npp3.c: In function ‘_glp_npp_implied_bounds’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/npp/npp3.c:2762:32: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
2762 | { if (apj->val > 0.0 && apj->col->ub == +DBL_MAX ||
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/npp/npp3.c:2811:32: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
2811 | { if (apj->val > 0.0 && apj->col->lb == -DBL_MAX ||
| ^
[ 52%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/npp/npp4.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/npp/npp4.c: In function ‘_glp_npp_hidden_packing’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/npp/npp4.c:521:24: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
521 | if (kase == 1 && ret == 1 || ret == 2)
| ~~~~~~~~~~^~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/npp/npp4.c: In function ‘_glp_npp_hidden_covering’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/npp/npp4.c:1014:24: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
1014 | if (kase == 1 && ret == 1 || ret == 2)
| ~~~~~~~~~~^~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/npp/npp4.c: In function ‘_glp_npp_implied_packing’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/npp/npp4.c:732:17: warning: ‘ptr’ may be used uninitialized [-Wmaybe-uninitialized]
732 | { if (!(e->xj->is_int && e->xj->lb == 0.0 && e->xj->ub == 1.0))
| ~^~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/npp/npp4.c:715:20: note: ‘ptr’ was declared here
715 | { struct elem *ptr, *e, *i, *k;
| ^~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/npp/npp4.c:740:18: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized]
740 | b -= e->aj * e->xj->ub;
| ~~^~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/npp/npp4.c:717:14: note: ‘b’ was declared here
717 | double b, eps;
| ^
[ 52%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/npp/npp5.c.o
[ 52%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/npp/npp6.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/npp/npp6.c: In function ‘_glp_npp_sat_encode_sum_ax’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/npp/npp6.c:853:17: warning: ‘__builtin_memset’ writing between 256 and 17179869176 bytes into a region of size 248 overflows the destination [-Wstringop-overflow=]
853 | set[k] = NULL;
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/npp/npp6.c:836:15: note: at offset 8 into destination object ‘set’ of size 256
836 | NPPLSE *set[1+NBIT_MAX], *lse;
| ^~~
[ 52%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/proxy/proxy.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/proxy/proxy.c: In function ‘do_refine’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/proxy/proxy.c:952:23: warning: unused variable ‘tlimit’ [-Wunused-variable]
952 | double val, tela, tlimit;
| ^~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/proxy/proxy.c:952:17: warning: variable ‘tela’ set but not used [-Wunused-but-set-variable]
952 | double val, tela, tlimit;
| ^~~~
[ 52%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/proxy/proxy1.c.o
[ 52%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/simplex/spxat.c.o
[ 55%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/simplex/spxchuzc.c.o
[ 55%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/simplex/spxchuzr.c.o
[ 55%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/simplex/spxlp.c.o
[ 55%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/simplex/spxnt.c.o
[ 55%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/simplex/spxprim.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/simplex/spxprim.c: In function ‘primal_simplex’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/simplex/spxprim.c:1508:10: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
1508 | if (csa->d_st)
| ^
In file included from /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/simplex/spxprim.c:26:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/simplex/spxprim.c: In function ‘display’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/env/env.h:145:17: warning: ‘nnn’ may be used uninitialized [-Wmaybe-uninitialized]
145 | #define xprintf glp_printf
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/simplex/spxprim.c:1082:7: note: in expansion of macro ‘xprintf’
1082 | xprintf("%c%6d: obj = %17.9e inf = %11.3e (%d)",
| ^~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/simplex/spxprim.c:1021:11: note: ‘nnn’ was declared here
1021 | { int nnn, k;
| ^~~
In function ‘primal_simplex’,
inlined from ‘_glp_spx_primal’ at /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/simplex/spxprim.c:1764:13:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/simplex/spxprim.c:1535:13: warning: ‘refct’ may be used uninitialized [-Wmaybe-uninitialized]
1535 | { if (refct > 0)
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/simplex/spxprim.c: In function ‘_glp_spx_primal’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/simplex/spxprim.c:1157:14: note: ‘refct’ was declared here
1157 | int j, refct, ret;
| ^~~~~
[ 55%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/simplex/spxprob.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/simplex/spxprob.c: In function ‘_glp_spx_build_lp’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/simplex/spxprob.c:167:18: warning: ‘dir’ may be used uninitialized [-Wmaybe-uninitialized]
167 | c[0] = dir * P->c0;
| ~~~~^~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/simplex/spxprob.c:154:14: note: ‘dir’ was declared here
154 | double dir, delta;
| ^~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/simplex/spxprob.c: In function ‘_glp_spx_store_sol’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/simplex/spxprob.c:598:25: warning: ‘dir’ may be used uninitialized [-Wmaybe-uninitialized]
598 | row->dual = - dir * pi[i] * row->rii;
| ^~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/simplex/spxprob.c:574:14: note: ‘dir’ was declared here
574 | double dir;
| ^~~
[ 55%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/simplex/spychuzc.c.o
[ 55%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/simplex/spychuzr.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/simplex/spychuzr.c: In function ‘_glp_spy_chuzr_std’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/simplex/spychuzr.c:146:13: warning: ‘abs_ri’ may be used uninitialized [-Wmaybe-uninitialized]
146 | if (abs_rp < abs_ri)
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/simplex/spychuzr.c:134:14: note: ‘abs_ri’ was declared here
134 | double abs_ri, abs_rp;
| ^~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/simplex/spychuzr.c: In function ‘_glp_spy_chuzr_pse’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/simplex/spychuzr.c:308:24: warning: ‘ri’ may be used uninitialized [-Wmaybe-uninitialized]
308 | temp = (ri * ri) / gamma[i];
| ~~~~^~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/simplex/spychuzr.c:292:20: note: ‘ri’ was declared here
292 | double best, ri, temp;
| ^~
[ 55%] Building C object vendor/glpk/CMakeFiles/glpk_vendored.dir/simplex/spydual.c.o
In function ‘dual_simplex’,
inlined from ‘_glp_spy_dual’ at /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/simplex/spydual.c:2008:13:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/simplex/spydual.c:1765:13: warning: ‘refct’ may be used uninitialized [-Wmaybe-uninitialized]
1765 | { if (refct > 0)
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/simplex/spydual.c: In function ‘_glp_spy_dual’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/simplex/spydual.c:1242:25: note: ‘refct’ was declared here
1242 | int j, k, p_flag, refct, ret;
| ^~~~~
[ 55%] Built target glpk_vendored
[ 55%] Building C object vendor/lapack/CMakeFiles/arpack_vendored.dir/dnaupd.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dnaupd.c: In function ‘igraphdnaupd_’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dnaupd.c:473:29: warning: variable ‘levec’ set but not used [-Wunused-but-set-variable]
473 | IGRAPH_F77_SAVE integer levec;
| ^~~~~
[ 55%] Building C object vendor/lapack/CMakeFiles/arpack_vendored.dir/dnaup2.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dnaup2.c: In function ‘igraphdnaup2_’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dnaup2.c:241:26: warning: variable ‘tnaup2’ set but not used [-Wunused-but-set-variable]
241 | IGRAPH_F77_SAVE real tnaup2;
| ^~~~~~
[ 55%] Building C object vendor/lapack/CMakeFiles/arpack_vendored.dir/dgetv0.c.o
[ 55%] Building C object vendor/lapack/CMakeFiles/arpack_vendored.dir/dvout.c.o
[ 55%] Building C object vendor/lapack/CMakeFiles/arpack_vendored.dir/second.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/second.c: In function ‘igraphsecond_’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/second.c:17:10: warning: variable ‘t1’ set but not used [-Wunused-but-set-variable]
17 | real t1;
| ^~
[ 55%] Building C object vendor/lapack/CMakeFiles/arpack_vendored.dir/dmout.c.o
[ 55%] Building C object vendor/lapack/CMakeFiles/arpack_vendored.dir/dnaitr.c.o
[ 55%] Building C object vendor/lapack/CMakeFiles/arpack_vendored.dir/ivout.c.o
[ 55%] Building C object vendor/lapack/CMakeFiles/arpack_vendored.dir/dnapps.c.o
[ 55%] Building C object vendor/lapack/CMakeFiles/arpack_vendored.dir/dnconv.c.o
[ 55%] Building C object vendor/lapack/CMakeFiles/arpack_vendored.dir/dneigh.c.o
[ 55%] Building C object vendor/lapack/CMakeFiles/arpack_vendored.dir/dlaqrb.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dlaqrb.c: In function ‘igraphdlaqrb_’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dlaqrb.c:572:16: warning: ‘i2’ may be used uninitialized [-Wmaybe-uninitialized]
572 | if (i2 > i__) {
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dlaqrb.c:139:17: note: ‘i2’ was declared here
139 | integer i1, i2;
| ^~
[ 55%] Building C object vendor/lapack/CMakeFiles/arpack_vendored.dir/dngets.c.o
[ 55%] Building C object vendor/lapack/CMakeFiles/arpack_vendored.dir/dsortc.c.o
[ 55%] Building C object vendor/lapack/CMakeFiles/arpack_vendored.dir/dstatn.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstatn.c: In function ‘igraphdstatn_’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstatn.c:39:10: warning: variable ‘tmvopx’ set but not used [-Wunused-but-set-variable]
39 | real tmvopx;
| ^~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstatn.c:38:21: warning: variable ‘nrstrt’ set but not used [-Wunused-but-set-variable]
38 | integer nrorth, nrstrt;
| ^~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstatn.c:38:13: warning: variable ‘nrorth’ set but not used [-Wunused-but-set-variable]
38 | integer nrorth, nrstrt;
| ^~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstatn.c:37:50: warning: variable ‘tnconv’ set but not used [-Wunused-but-set-variable]
37 | real tnaupd, titref, tnaitr, tngets, tnapps, tnconv;
| ^~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstatn.c:37:42: warning: variable ‘tnapps’ set but not used [-Wunused-but-set-variable]
37 | real tnaupd, titref, tnaitr, tngets, tnapps, tnconv;
| ^~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstatn.c:37:34: warning: variable ‘tngets’ set but not used [-Wunused-but-set-variable]
37 | real tnaupd, titref, tnaitr, tngets, tnapps, tnconv;
| ^~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstatn.c:37:26: warning: variable ‘tnaitr’ set but not used [-Wunused-but-set-variable]
37 | real tnaupd, titref, tnaitr, tngets, tnapps, tnconv;
| ^~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstatn.c:37:18: warning: variable ‘titref’ set but not used [-Wunused-but-set-variable]
37 | real tnaupd, titref, tnaitr, tngets, tnapps, tnconv;
| ^~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstatn.c:37:10: warning: variable ‘tnaupd’ set but not used [-Wunused-but-set-variable]
37 | real tnaupd, titref, tnaitr, tngets, tnapps, tnconv;
| ^~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstatn.c:36:13: warning: variable ‘nitref’ set but not used [-Wunused-but-set-variable]
36 | integer nitref;
| ^~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstatn.c:35:40: warning: variable ‘tneigh’ set but not used [-Wunused-but-set-variable]
35 | real trvec, tmvbx, tnaup2, tgetv0, tneigh;
| ^~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstatn.c:35:32: warning: variable ‘tgetv0’ set but not used [-Wunused-but-set-variable]
35 | real trvec, tmvbx, tnaup2, tgetv0, tneigh;
| ^~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstatn.c:35:24: warning: variable ‘tnaup2’ set but not used [-Wunused-but-set-variable]
35 | real trvec, tmvbx, tnaup2, tgetv0, tneigh;
| ^~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstatn.c:35:17: warning: variable ‘tmvbx’ set but not used [-Wunused-but-set-variable]
35 | real trvec, tmvbx, tnaup2, tgetv0, tneigh;
| ^~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstatn.c:35:10: warning: variable ‘trvec’ set but not used [-Wunused-but-set-variable]
35 | real trvec, tmvbx, tnaup2, tgetv0, tneigh;
| ^~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstatn.c:34:18: warning: variable ‘nopx’ set but not used [-Wunused-but-set-variable]
34 | integer nbx, nopx;
| ^~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstatn.c:34:13: warning: variable ‘nbx’ set but not used [-Wunused-but-set-variable]
34 | integer nbx, nopx;
| ^~~
[ 55%] Building C object vendor/lapack/CMakeFiles/arpack_vendored.dir/dneupd.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dneupd.c: In function ‘igraphdneupd_’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dneupd.c:349:13: warning: variable ‘iwev’ set but not used [-Wunused-but-set-variable]
349 | integer iwev;
| ^~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dneupd.c:341:23: warning: variable ‘wrr’ set but not used [-Wunused-but-set-variable]
341 | integer irr, wri, wrr;
| ^~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dneupd.c:715:20: warning: ‘thres’ may be used uninitialized [-Wmaybe-uninitialized]
715 | if ((d__1 = workl[iri + j], abs(d__1)) <= thres) {
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dneupd.c:367:16: note: ‘thres’ was declared here
367 | doublereal thres;
| ^~~~~
[ 55%] Building C object vendor/lapack/CMakeFiles/arpack_vendored.dir/dsaupd.c.o
[ 55%] Building C object vendor/lapack/CMakeFiles/arpack_vendored.dir/dsaup2.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dsaup2.c: In function ‘igraphdsaup2_’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dsaup2.c:251:10: warning: variable ‘tsaup2’ set but not used [-Wunused-but-set-variable]
251 | real tsaup2;
| ^~~~~~
[ 58%] Building C object vendor/lapack/CMakeFiles/arpack_vendored.dir/dsaitr.c.o
[ 58%] Building C object vendor/lapack/CMakeFiles/arpack_vendored.dir/dsapps.c.o
[ 58%] Building C object vendor/lapack/CMakeFiles/arpack_vendored.dir/dsconv.c.o
[ 58%] Building C object vendor/lapack/CMakeFiles/arpack_vendored.dir/dseigt.c.o
[ 58%] Building C object vendor/lapack/CMakeFiles/arpack_vendored.dir/dstqrb.c.o
[ 58%] Building C object vendor/lapack/CMakeFiles/arpack_vendored.dir/dsgets.c.o
[ 58%] Building C object vendor/lapack/CMakeFiles/arpack_vendored.dir/dsortr.c.o
[ 58%] Building C object vendor/lapack/CMakeFiles/arpack_vendored.dir/dstats.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstats.c: In function ‘igraphdstats_’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstats.c:31:10: warning: variable ‘tmvopx’ set but not used [-Wunused-but-set-variable]
31 | real tmvopx;
| ^~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstats.c:30:13: warning: variable ‘nrstrt’ set but not used [-Wunused-but-set-variable]
30 | integer nrstrt;
| ^~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstats.c:29:10: warning: variable ‘tsconv’ set but not used [-Wunused-but-set-variable]
29 | real tsconv;
| ^~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstats.c:28:13: warning: variable ‘nrorth’ set but not used [-Wunused-but-set-variable]
28 | integer nrorth;
| ^~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstats.c:27:50: warning: variable ‘tsapps’ set but not used [-Wunused-but-set-variable]
27 | real titref, tseigt, tsaupd, tsaitr, tsgets, tsapps;
| ^~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstats.c:27:42: warning: variable ‘tsgets’ set but not used [-Wunused-but-set-variable]
27 | real titref, tseigt, tsaupd, tsaitr, tsgets, tsapps;
| ^~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstats.c:27:34: warning: variable ‘tsaitr’ set but not used [-Wunused-but-set-variable]
27 | real titref, tseigt, tsaupd, tsaitr, tsgets, tsapps;
| ^~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstats.c:27:26: warning: variable ‘tsaupd’ set but not used [-Wunused-but-set-variable]
27 | real titref, tseigt, tsaupd, tsaitr, tsgets, tsapps;
| ^~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstats.c:27:18: warning: variable ‘tseigt’ set but not used [-Wunused-but-set-variable]
27 | real titref, tseigt, tsaupd, tsaitr, tsgets, tsapps;
| ^~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstats.c:27:10: warning: variable ‘titref’ set but not used [-Wunused-but-set-variable]
27 | real titref, tseigt, tsaupd, tsaitr, tsgets, tsapps;
| ^~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstats.c:26:13: warning: variable ‘nitref’ set but not used [-Wunused-but-set-variable]
26 | integer nitref;
| ^~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstats.c:25:32: warning: variable ‘tsaup2’ set but not used [-Wunused-but-set-variable]
25 | real trvec, tmvbx, tgetv0, tsaup2;
| ^~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstats.c:25:24: warning: variable ‘tgetv0’ set but not used [-Wunused-but-set-variable]
25 | real trvec, tmvbx, tgetv0, tsaup2;
| ^~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstats.c:25:17: warning: variable ‘tmvbx’ set but not used [-Wunused-but-set-variable]
25 | real trvec, tmvbx, tgetv0, tsaup2;
| ^~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstats.c:25:10: warning: variable ‘trvec’ set but not used [-Wunused-but-set-variable]
25 | real trvec, tmvbx, tgetv0, tsaup2;
| ^~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstats.c:24:18: warning: variable ‘nopx’ set but not used [-Wunused-but-set-variable]
24 | integer nbx, nopx;
| ^~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dstats.c:24:13: warning: variable ‘nbx’ set but not used [-Wunused-but-set-variable]
24 | integer nbx, nopx;
| ^~~
[ 58%] Building C object vendor/lapack/CMakeFiles/arpack_vendored.dir/dseupd.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dseupd.c: In function ‘igraphdseupd_’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dseupd.c:655:46: warning: ‘thres2’ may be used uninitialized [-Wmaybe-uninitialized]
655 | if (workl[irz + j] <= thres1 || workl[irz + j] >= thres2) {
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dseupd.c:279:24: note: ‘thres2’ was declared here
279 | doublereal thres1, thres2;
| ^~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dseupd.c:655:20: warning: ‘thres1’ may be used uninitialized [-Wmaybe-uninitialized]
655 | if (workl[irz + j] <= thres1 || workl[irz + j] >= thres2) {
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/lapack/dseupd.c:279:16: note: ‘thres1’ was declared here
279 | doublereal thres1, thres2;
| ^~~~~~
[ 58%] Building C object vendor/lapack/CMakeFiles/arpack_vendored.dir/dsesrt.c.o
[ 58%] Built target arpack_vendored
[ 58%] Building C object vendor/mini-gmp/CMakeFiles/gmp_vendored.dir/mini-gmp.c.o
[ 58%] Built target gmp_vendored
[ 58%] Building C object vendor/pcg/CMakeFiles/pcg.dir/pcg-advance-64.c.o
[ 58%] Building C object vendor/pcg/CMakeFiles/pcg.dir/pcg-advance-128.c.o
[ 58%] Building C object vendor/pcg/CMakeFiles/pcg.dir/pcg-output-32.c.o
[ 58%] Building C object vendor/pcg/CMakeFiles/pcg.dir/pcg-output-64.c.o
[ 58%] Building C object vendor/pcg/CMakeFiles/pcg.dir/pcg-output-128.c.o
[ 58%] Building C object vendor/pcg/CMakeFiles/pcg.dir/pcg-rngs-64.c.o
[ 58%] Building C object vendor/pcg/CMakeFiles/pcg.dir/pcg-rngs-128.c.o
[ 58%] Built target pcg
[ 58%] Building C object vendor/plfit/CMakeFiles/plfit_vendored.dir/gss.c.o
[ 58%] Building C object vendor/plfit/CMakeFiles/plfit_vendored.dir/hzeta.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/plfit/hzeta.c: In function ‘hsl_sf_lnhzeta_deriv_tuple’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/plfit/hzeta.c:93:24: warning: ‘result0.val’ may be used uninitialized [-Wmaybe-uninitialized]
93 | return (result0.val);
| ~~~~~~~~^~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/plfit/hzeta.c:642:9: note: in expansion of macro ‘HSL_SF_EVAL_TUPLE_RESULT’
642 | HSL_SF_EVAL_TUPLE_RESULT(hsl_sf_lnhzeta_deriv_tuple_e(s,q,&result0,&result1)); }
| ^~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/plfit/hzeta.c:88:23: note: ‘result0.val’ was declared here
88 | gsl_sf_result result0; \
| ^~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/plfit/hzeta.c:642:9: note: in expansion of macro ‘HSL_SF_EVAL_TUPLE_RESULT’
642 | HSL_SF_EVAL_TUPLE_RESULT(hsl_sf_lnhzeta_deriv_tuple_e(s,q,&result0,&result1)); }
| ^~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/plfit/hzeta.c:91:16: warning: ‘result1.val’ may be used uninitialized [-Wmaybe-uninitialized]
91 | *tuple1=result1.val; \
| ~~~~~~~^~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/plfit/hzeta.c:642:9: note: in expansion of macro ‘HSL_SF_EVAL_TUPLE_RESULT’
642 | HSL_SF_EVAL_TUPLE_RESULT(hsl_sf_lnhzeta_deriv_tuple_e(s,q,&result0,&result1)); }
| ^~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/plfit/hzeta.c:89:23: note: ‘result1.val’ was declared here
89 | gsl_sf_result result1; \
| ^~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/plfit/hzeta.c:642:9: note: in expansion of macro ‘HSL_SF_EVAL_TUPLE_RESULT’
642 | HSL_SF_EVAL_TUPLE_RESULT(hsl_sf_lnhzeta_deriv_tuple_e(s,q,&result0,&result1)); }
| ^~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/plfit/hzeta.c: In function ‘hsl_sf_lnhzeta’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/plfit/hzeta.c:85:23: warning: ‘result.val’ may be used uninitialized [-Wmaybe-uninitialized]
85 | return (result.val);
| ~~~~~~~^~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/plfit/hzeta.c:650:9: note: in expansion of macro ‘HSL_SF_EVAL_RESULT’
650 | HSL_SF_EVAL_RESULT(hsl_sf_lnhzeta_e(s,q,&result)); }
| ^~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/plfit/hzeta.c:83:23: note: ‘result.val’ was declared here
83 | gsl_sf_result result; \
| ^~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/plfit/hzeta.c:650:9: note: in expansion of macro ‘HSL_SF_EVAL_RESULT’
650 | HSL_SF_EVAL_RESULT(hsl_sf_lnhzeta_e(s,q,&result)); }
| ^~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/plfit/hzeta.c: In function ‘hsl_sf_lnhzeta_deriv’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/plfit/hzeta.c:85:23: warning: ‘result.val’ may be used uninitialized [-Wmaybe-uninitialized]
85 | return (result.val);
| ~~~~~~~^~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/plfit/hzeta.c:658:9: note: in expansion of macro ‘HSL_SF_EVAL_RESULT’
658 | HSL_SF_EVAL_RESULT(hsl_sf_lnhzeta_deriv_e(s,q,&result)); }
| ^~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/plfit/hzeta.c:83:23: note: ‘result.val’ was declared here
83 | gsl_sf_result result; \
| ^~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/plfit/hzeta.c:658:9: note: in expansion of macro ‘HSL_SF_EVAL_RESULT’
658 | HSL_SF_EVAL_RESULT(hsl_sf_lnhzeta_deriv_e(s,q,&result)); }
| ^~~~~~~~~~~~~~~~~~
[ 61%] Building C object vendor/plfit/CMakeFiles/plfit_vendored.dir/kolmogorov.c.o
[ 61%] Building C object vendor/plfit/CMakeFiles/plfit_vendored.dir/lbfgs.c.o
[ 61%] Building C object vendor/plfit/CMakeFiles/plfit_vendored.dir/mt.c.o
[ 61%] Building C object vendor/plfit/CMakeFiles/plfit_vendored.dir/options.c.o
[ 61%] Building C object vendor/plfit/CMakeFiles/plfit_vendored.dir/platform.c.o
[ 61%] Building C object vendor/plfit/CMakeFiles/plfit_vendored.dir/plfit.c.o
[ 61%] Building C object vendor/plfit/CMakeFiles/plfit_vendored.dir/plfit_error.c.o
[ 61%] Building C object vendor/plfit/CMakeFiles/plfit_vendored.dir/rbinom.c.o
[ 61%] Building C object vendor/plfit/CMakeFiles/plfit_vendored.dir/sampling.c.o
[ 61%] Built target plfit_vendored
[ 61%] Built target parsersources
[ 61%] Building CXX object src/centrality/prpack/CMakeFiles/prpack.dir/prpack_base_graph.cpp.o
[ 61%] Building CXX object src/centrality/prpack/CMakeFiles/prpack.dir/prpack_igraph_graph.cpp.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/centrality/prpack/prpack_igraph_graph.cpp: In member function ‘igraph_error_t prpack::prpack_igraph_graph::convert_from_igraph(const igraph_t*, const igraph_vector_t*, bool)’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/centrality/prpack/prpack_igraph_graph.cpp:121:21: warning: ‘p_weight’ may be used uninitialized [-Wmaybe-uninitialized]
121 | ++p_weight;
| ^~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/centrality/prpack/prpack_igraph_graph.cpp:19:13: note: ‘p_weight’ was declared here
19 | double *p_weight;
| ^~~~~~~~
[ 61%] Building CXX object src/centrality/prpack/CMakeFiles/prpack.dir/prpack_preprocessed_ge_graph.cpp.o
[ 61%] Building CXX object src/centrality/prpack/CMakeFiles/prpack.dir/prpack_preprocessed_gs_graph.cpp.o
[ 61%] Building CXX object src/centrality/prpack/CMakeFiles/prpack.dir/prpack_preprocessed_scc_graph.cpp.o
[ 61%] Building CXX object src/centrality/prpack/CMakeFiles/prpack.dir/prpack_preprocessed_schur_graph.cpp.o
[ 61%] Building CXX object src/centrality/prpack/CMakeFiles/prpack.dir/prpack_result.cpp.o
[ 61%] Building CXX object src/centrality/prpack/CMakeFiles/prpack.dir/prpack_solver.cpp.o
[ 61%] Building CXX object src/centrality/prpack/CMakeFiles/prpack.dir/prpack_utils.cpp.o
[ 61%] Built target prpack
[ 61%] Building C object src/cliques/cliquer/CMakeFiles/cliquer.dir/cliquer.c.o
[ 61%] Building C object src/cliques/cliquer/CMakeFiles/cliquer.dir/cliquer_graph.c.o
[ 61%] Building C object src/cliques/cliquer/CMakeFiles/cliquer.dir/reorder.c.o
[ 61%] Built target cliquer
[ 61%] Building C object src/CMakeFiles/igraph.dir/core/array.c.o
In file included from /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/core/array.c:30:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/core/array.pmt: In function ‘igraph_array3_update’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/core/array.pmt:107:5: warning: ‘igraph_array3_resize’ is deprecated [-Wdeprecated-declarations]
107 | IGRAPH_CHECK(FUNCTION(igraph_array3, resize)(to, from->n1, from->n2, from->n3));
| ^~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/core/array.c:29:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/core/array.pmt:68:25: note: declared here
68 | igraph_error_t FUNCTION(igraph_array3, resize)(
| ^~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_pmt.h:24:23: note: in definition of macro ‘CONCAT2x’
24 | #define CONCAT2x(a,b) a ## _ ## b
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_pmt.h:169:31: note: in expansion of macro ‘CONCAT2’
169 | #define FUNCTION(a,c) CONCAT2(a,c)
| ^~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/core/array.pmt:68:16: note: in expansion of macro ‘FUNCTION’
68 | igraph_error_t FUNCTION(igraph_array3, resize)(
| ^~~~~~~~
In file included from /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/core/array.c:36:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/core/array.pmt: In function ‘igraph_array3_int_update’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/core/array.pmt:107:5: warning: ‘igraph_array3_int_resize’ is deprecated [-Wdeprecated-declarations]
107 | IGRAPH_CHECK(FUNCTION(igraph_array3, resize)(to, from->n1, from->n2, from->n3));
| ^~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/core/array.c:35:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/core/array.pmt:68:25: note: declared here
68 | igraph_error_t FUNCTION(igraph_array3, resize)(
| ^~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_pmt.h:26:25: note: in definition of macro ‘CONCAT3x’
26 | #define CONCAT3x(a,b,c) a ## _ ## b ## _ ## c
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_pmt.h:177:31: note: in expansion of macro ‘CONCAT3’
177 | #define FUNCTION(a,c) CONCAT3(a,SHORT,c)
| ^~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/core/array.pmt:68:16: note: in expansion of macro ‘FUNCTION’
68 | igraph_error_t FUNCTION(igraph_array3, resize)(
| ^~~~~~~~
In file included from /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/core/array.c:42:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/core/array.pmt: In function ‘igraph_array3_char_update’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/core/array.pmt:107:5: warning: ‘igraph_array3_char_resize’ is deprecated [-Wdeprecated-declarations]
107 | IGRAPH_CHECK(FUNCTION(igraph_array3, resize)(to, from->n1, from->n2, from->n3));
| ^~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/core/array.c:41:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/core/array.pmt:68:25: note: declared here
68 | igraph_error_t FUNCTION(igraph_array3, resize)(
| ^~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_pmt.h:26:25: note: in definition of macro ‘CONCAT3x’
26 | #define CONCAT3x(a,b,c) a ## _ ## b ## _ ## c
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_pmt.h:177:31: note: in expansion of macro ‘CONCAT3’
177 | #define FUNCTION(a,c) CONCAT3(a,SHORT,c)
| ^~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/core/array.pmt:68:16: note: in expansion of macro ‘FUNCTION’
68 | igraph_error_t FUNCTION(igraph_array3, resize)(
| ^~~~~~~~
In file included from /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/core/array.c:48:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/core/array.pmt: In function ‘igraph_array3_bool_update’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/core/array.pmt:107:5: warning: ‘igraph_array3_bool_resize’ is deprecated [-Wdeprecated-declarations]
107 | IGRAPH_CHECK(FUNCTION(igraph_array3, resize)(to, from->n1, from->n2, from->n3));
| ^~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/core/array.c:47:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/core/array.pmt:68:25: note: declared here
68 | igraph_error_t FUNCTION(igraph_array3, resize)(
| ^~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_pmt.h:26:25: note: in definition of macro ‘CONCAT3x’
26 | #define CONCAT3x(a,b,c) a ## _ ## b ## _ ## c
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/core/array.pmt:68:16: note: in expansion of macro ‘FUNCTION’
68 | igraph_error_t FUNCTION(igraph_array3, resize)(
| ^~~~~~~~
[ 61%] Building C object src/CMakeFiles/igraph.dir/core/bitset.c.o
[ 61%] Building C object src/CMakeFiles/igraph.dir/core/bitset_list.c.o
[ 61%] Building C object src/CMakeFiles/igraph.dir/core/buckets.c.o
[ 61%] Building C object src/CMakeFiles/igraph.dir/core/cutheap.c.o
[ 61%] Building C object src/CMakeFiles/igraph.dir/core/dqueue.c.o
[ 61%] Building C object src/CMakeFiles/igraph.dir/core/error.c.o
[ 61%] Building C object src/CMakeFiles/igraph.dir/core/estack.c.o
[ 61%] Building C object src/CMakeFiles/igraph.dir/core/fixed_vectorlist.c.o
[ 61%] Building C object src/CMakeFiles/igraph.dir/core/genheap.c.o
[ 64%] Building C object src/CMakeFiles/igraph.dir/core/grid.c.o
[ 64%] Building C object src/CMakeFiles/igraph.dir/core/heap.c.o
[ 64%] Building C object src/CMakeFiles/igraph.dir/core/indheap.c.o
[ 64%] Building C object src/CMakeFiles/igraph.dir/core/interruption.c.o
[ 64%] Building C object src/CMakeFiles/igraph.dir/core/marked_queue.c.o
[ 64%] Building C object src/CMakeFiles/igraph.dir/core/matrix.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/core/matrix.c: In function ‘igraph_matrix_all_e_tol’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/core/matrix.c:234:13: warning: ‘igraph_vector_e_tol’ is deprecated [-Wdeprecated-declarations]
234 | igraph_vector_e_tol(&lhs->data, &rhs->data, tol);
| ^~~~~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_matrix.h:29,
from /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/core/matrix.c:24:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector.h:135:47: note: declared here
135 | IGRAPH_DEPRECATED IGRAPH_EXPORT igraph_bool_t igraph_vector_e_tol(const igraph_vector_t *lhs,
| ^~~~~~~~~~~~~~~~~~~
[ 64%] Building C object src/CMakeFiles/igraph.dir/core/matrix_list.c.o
[ 64%] Building C object src/CMakeFiles/igraph.dir/core/memory.c.o
[ 64%] Building C object src/CMakeFiles/igraph.dir/core/printing.c.o
[ 64%] Building C object src/CMakeFiles/igraph.dir/core/progress.c.o
[ 64%] Building C object src/CMakeFiles/igraph.dir/core/psumtree.c.o
[ 64%] Building C object src/CMakeFiles/igraph.dir/core/set.c.o
[ 64%] Building C object src/CMakeFiles/igraph.dir/core/sparsemat.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/core/sparsemat.c: In function ‘igraph_i_sparsemat_arpack_multiply’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/core/sparsemat.c:1627:5: warning: ‘vto’ may be used uninitialized [-Wmaybe-uninitialized]
1627 | igraph_vector_view(&vto, to, n);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector.h:70,
from /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_sparsemat.h:30,
from /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/core/sparsemat.c:24:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h:93:51: note: by argument 1 of type ‘const igraph_vector_t *’ to ‘igraph_vector_view’ declared here
93 | IGRAPH_EXPORT const TYPE(igraph_vector) *FUNCTION(igraph_vector, view)(const TYPE(igraph_vector) *v,
| ^~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_pmt.h:24:23: note: in definition of macro ‘CONCAT2x’
24 | #define CONCAT2x(a,b) a ## _ ## b
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_pmt.h:169:31: note: in expansion of macro ‘CONCAT2’
169 | #define FUNCTION(a,c) CONCAT2(a,c)
| ^~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h:93:42: note: in expansion of macro ‘FUNCTION’
93 | IGRAPH_EXPORT const TYPE(igraph_vector) *FUNCTION(igraph_vector, view)(const TYPE(igraph_vector) *v,
| ^~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/core/sparsemat.c:1626:21: note: ‘vto’ declared here
1626 | igraph_vector_t vto, vfrom;
| ^~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/core/sparsemat.c: In function ‘igraph_i_sparsemat_arpack_solve’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/core/sparsemat.c:1649:5: warning: ‘vfrom’ may be used uninitialized [-Wmaybe-uninitialized]
1649 | igraph_vector_view(&vfrom, from, n);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h:93:51: note: by argument 1 of type ‘const igraph_vector_t *’ to ‘igraph_vector_view’ declared here
93 | IGRAPH_EXPORT const TYPE(igraph_vector) *FUNCTION(igraph_vector, view)(const TYPE(igraph_vector) *v,
| ^~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_pmt.h:24:23: note: in definition of macro ‘CONCAT2x’
24 | #define CONCAT2x(a,b) a ## _ ## b
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_pmt.h:169:31: note: in expansion of macro ‘CONCAT2’
169 | #define FUNCTION(a,c) CONCAT2(a,c)
| ^~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h:93:42: note: in expansion of macro ‘FUNCTION’
93 | IGRAPH_EXPORT const TYPE(igraph_vector) *FUNCTION(igraph_vector, view)(const TYPE(igraph_vector) *v,
| ^~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/core/sparsemat.c:1647:21: note: ‘vfrom’ declared here
1647 | igraph_vector_t vfrom, vto;
| ^~~~~
[ 64%] Building C object src/CMakeFiles/igraph.dir/core/stack.c.o
[ 64%] Building C object src/CMakeFiles/igraph.dir/core/statusbar.c.o
[ 64%] Building C object src/CMakeFiles/igraph.dir/core/strvector.c.o
[ 64%] Building C object src/CMakeFiles/igraph.dir/core/trie.c.o
[ 64%] Building C object src/CMakeFiles/igraph.dir/core/vector.c.o
[ 64%] Building C object src/CMakeFiles/igraph.dir/core/vector_list.c.o
[ 64%] Building C object src/CMakeFiles/igraph.dir/core/vector_ptr.c.o
[ 64%] Building C object src/CMakeFiles/igraph.dir/math/complex.c.o
[ 67%] Building C object src/CMakeFiles/igraph.dir/math/safe_intop.c.o
[ 67%] Building C object src/CMakeFiles/igraph.dir/math/utils.c.o
[ 67%] Building C object src/CMakeFiles/igraph.dir/linalg/arpack.c.o
[ 67%] Building C object src/CMakeFiles/igraph.dir/linalg/blas.c.o
[ 67%] Building C object src/CMakeFiles/igraph.dir/linalg/eigen.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/linalg/eigen.c: In function ‘igraph_i_eigen_matrix_sym_arpack_cb’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/linalg/eigen.c:486:9: warning: ‘vto’ may be used uninitialized [-Wmaybe-uninitialized]
486 | igraph_vector_view(&vto, to, n);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector.h:70,
from /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_matrix.h:29,
from /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_arpack.h:29,
from /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_eigen.h:28,
from /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/linalg/eigen.c:24:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h:93:51: note: by argument 1 of type ‘const igraph_vector_t *’ to ‘igraph_vector_view’ declared here
93 | IGRAPH_EXPORT const TYPE(igraph_vector) *FUNCTION(igraph_vector, view)(const TYPE(igraph_vector) *v,
| ^~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_pmt.h:24:23: note: in definition of macro ‘CONCAT2x’
24 | #define CONCAT2x(a,b) a ## _ ## b
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_pmt.h:169:31: note: in expansion of macro ‘CONCAT2’
169 | #define FUNCTION(a,c) CONCAT2(a,c)
| ^~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h:93:42: note: in expansion of macro ‘FUNCTION’
93 | IGRAPH_EXPORT const TYPE(igraph_vector) *FUNCTION(igraph_vector, view)(const TYPE(igraph_vector) *v,
| ^~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/linalg/eigen.c:485:25: note: ‘vto’ declared here
485 | igraph_vector_t vto, vfrom;
| ^~~
[ 67%] Building C object src/CMakeFiles/igraph.dir/linalg/lapack.c.o
[ 67%] Building C object src/CMakeFiles/igraph.dir/random/random.c.o
[ 67%] Building C object src/CMakeFiles/igraph.dir/random/rng_glibc2.c.o
[ 67%] Building C object src/CMakeFiles/igraph.dir/random/rng_mt19937.c.o
[ 67%] Building C object src/CMakeFiles/igraph.dir/random/rng_pcg32.c.o
[ 67%] Building C object src/CMakeFiles/igraph.dir/random/rng_pcg64.c.o
[ 67%] Building C object src/CMakeFiles/igraph.dir/graph/adjlist.c.o
[ 67%] Building C object src/CMakeFiles/igraph.dir/graph/attributes.c.o
[ 67%] Building C object src/CMakeFiles/igraph.dir/graph/basic_query.c.o
[ 67%] Building C object src/CMakeFiles/igraph.dir/graph/caching.c.o
[ 67%] Building C object src/CMakeFiles/igraph.dir/graph/cattributes.c.o
[ 67%] Building C object src/CMakeFiles/igraph.dir/graph/graph_list.c.o
[ 67%] Building C object src/CMakeFiles/igraph.dir/graph/iterators.c.o
[ 67%] Building C object src/CMakeFiles/igraph.dir/graph/type_common.c.o
[ 67%] Building C object src/CMakeFiles/igraph.dir/graph/type_indexededgelist.c.o
[ 70%] Building C object src/CMakeFiles/igraph.dir/graph/visitors.c.o
[ 70%] Building C object src/CMakeFiles/igraph.dir/constructors/adjacency.c.o
[ 70%] Building C object src/CMakeFiles/igraph.dir/constructors/atlas.c.o
In file included from /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_constructors.h:29,
from /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/atlas.c:19:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/atlas.c: In function ‘igraph_atlas’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/atlas.c:75:18: warning: ‘v’ may be used uninitialized [-Wmaybe-uninitialized]
75 | IGRAPH_CHECK(igraph_create(graph,
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_error.h:710:40: note: in definition of macro ‘IGRAPH_CHECK’
710 | igraph_error_t igraph_i_ret = (expr); \
| ^~~~
In file included from /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector.h:88,
from /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_matrix.h:29,
from /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_constructors.h:31:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h:93:51: note: by argument 1 of type ‘const igraph_vector_int_t *’ to ‘igraph_vector_int_view’ declared here
93 | IGRAPH_EXPORT const TYPE(igraph_vector) *FUNCTION(igraph_vector, view)(const TYPE(igraph_vector) *v,
| ^~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_pmt.h:26:25: note: in definition of macro ‘CONCAT3x’
26 | #define CONCAT3x(a,b,c) a ## _ ## b ## _ ## c
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_pmt.h:177:31: note: in expansion of macro ‘CONCAT3’
177 | #define FUNCTION(a,c) CONCAT3(a,SHORT,c)
| ^~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h:93:42: note: in expansion of macro ‘FUNCTION’
93 | IGRAPH_EXPORT const TYPE(igraph_vector) *FUNCTION(igraph_vector, view)(const TYPE(igraph_vector) *v,
| ^~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/atlas.c:64:31: note: ‘v’ declared here
64 | const igraph_vector_int_t v;
| ^
[ 70%] Building C object src/CMakeFiles/igraph.dir/constructors/basic_constructors.c.o
[ 70%] Building C object src/CMakeFiles/igraph.dir/constructors/circulant.c.o
[ 70%] Building C object src/CMakeFiles/igraph.dir/constructors/de_bruijn.c.o
[ 70%] Building C object src/CMakeFiles/igraph.dir/constructors/famous.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c: In function ‘igraph_i_famous’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c:261:5: warning: ‘edges’ may be used uninitialized [-Wmaybe-uninitialized]
261 | igraph_vector_int_view(&edges, data + 3, 2 * no_of_edges);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector.h:88,
from /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_matrix.h:29,
from /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_constructors.h:31,
from /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c:25:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h:93:51: note: by argument 1 of type ‘const igraph_vector_int_t *’ to ‘igraph_vector_int_view’ declared here
93 | IGRAPH_EXPORT const TYPE(igraph_vector) *FUNCTION(igraph_vector, view)(const TYPE(igraph_vector) *v,
| ^~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_pmt.h:26:25: note: in definition of macro ‘CONCAT3x’
26 | #define CONCAT3x(a,b,c) a ## _ ## b ## _ ## c
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_pmt.h:177:31: note: in expansion of macro ‘CONCAT3’
177 | #define FUNCTION(a,c) CONCAT3(a,SHORT,c)
| ^~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h:93:42: note: in expansion of macro ‘FUNCTION’
93 | IGRAPH_EXPORT const TYPE(igraph_vector) *FUNCTION(igraph_vector, view)(const TYPE(igraph_vector) *v,
| ^~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c:259:25: note: ‘edges’ declared here
259 | igraph_vector_int_t edges;
| ^~~~~
In function ‘igraph_i_famous’,
inlined from ‘igraph_famous’ at /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c:429:16:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c:261:5: warning: ‘edges’ may be used uninitialized [-Wmaybe-uninitialized]
261 | igraph_vector_int_view(&edges, data + 3, 2 * no_of_edges);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h: In function ‘igraph_famous’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h:93:51: note: by argument 1 of type ‘const igraph_vector_int_t *’ to ‘igraph_vector_int_view’ declared here
93 | IGRAPH_EXPORT const TYPE(igraph_vector) *FUNCTION(igraph_vector, view)(const TYPE(igraph_vector) *v,
| ^~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_pmt.h:26:25: note: in definition of macro ‘CONCAT3x’
26 | #define CONCAT3x(a,b,c) a ## _ ## b ## _ ## c
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_pmt.h:177:31: note: in expansion of macro ‘CONCAT3’
177 | #define FUNCTION(a,c) CONCAT3(a,SHORT,c)
| ^~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h:93:42: note: in expansion of macro ‘FUNCTION’
93 | IGRAPH_EXPORT const TYPE(igraph_vector) *FUNCTION(igraph_vector, view)(const TYPE(igraph_vector) *v,
| ^~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c:259:25: note: ‘edges’ declared here
259 | igraph_vector_int_t edges;
| ^~~~~
In function ‘igraph_i_famous’,
inlined from ‘igraph_famous’ at /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c:431:16:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c:261:5: warning: ‘edges’ may be used uninitialized [-Wmaybe-uninitialized]
261 | igraph_vector_int_view(&edges, data + 3, 2 * no_of_edges);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h: In function ‘igraph_famous’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h:93:51: note: by argument 1 of type ‘const igraph_vector_int_t *’ to ‘igraph_vector_int_view’ declared here
93 | IGRAPH_EXPORT const TYPE(igraph_vector) *FUNCTION(igraph_vector, view)(const TYPE(igraph_vector) *v,
| ^~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_pmt.h:26:25: note: in definition of macro ‘CONCAT3x’
26 | #define CONCAT3x(a,b,c) a ## _ ## b ## _ ## c
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_pmt.h:177:31: note: in expansion of macro ‘CONCAT3’
177 | #define FUNCTION(a,c) CONCAT3(a,SHORT,c)
| ^~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h:93:42: note: in expansion of macro ‘FUNCTION’
93 | IGRAPH_EXPORT const TYPE(igraph_vector) *FUNCTION(igraph_vector, view)(const TYPE(igraph_vector) *v,
| ^~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c:259:25: note: ‘edges’ declared here
259 | igraph_vector_int_t edges;
| ^~~~~
In function ‘igraph_i_famous’,
inlined from ‘igraph_famous’ at /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c:433:16:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c:261:5: warning: ‘edges’ may be used uninitialized [-Wmaybe-uninitialized]
261 | igraph_vector_int_view(&edges, data + 3, 2 * no_of_edges);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h: In function ‘igraph_famous’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h:93:51: note: by argument 1 of type ‘const igraph_vector_int_t *’ to ‘igraph_vector_int_view’ declared here
93 | IGRAPH_EXPORT const TYPE(igraph_vector) *FUNCTION(igraph_vector, view)(const TYPE(igraph_vector) *v,
| ^~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_pmt.h:26:25: note: in definition of macro ‘CONCAT3x’
26 | #define CONCAT3x(a,b,c) a ## _ ## b ## _ ## c
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_pmt.h:177:31: note: in expansion of macro ‘CONCAT3’
177 | #define FUNCTION(a,c) CONCAT3(a,SHORT,c)
| ^~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h:93:42: note: in expansion of macro ‘FUNCTION’
93 | IGRAPH_EXPORT const TYPE(igraph_vector) *FUNCTION(igraph_vector, view)(const TYPE(igraph_vector) *v,
| ^~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c:259:25: note: ‘edges’ declared here
259 | igraph_vector_int_t edges;
| ^~~~~
In function ‘igraph_i_famous’,
inlined from ‘igraph_famous’ at /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c:435:16:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c:261:5: warning: ‘edges’ may be used uninitialized [-Wmaybe-uninitialized]
261 | igraph_vector_int_view(&edges, data + 3, 2 * no_of_edges);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h: In function ‘igraph_famous’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h:93:51: note: by argument 1 of type ‘const igraph_vector_int_t *’ to ‘igraph_vector_int_view’ declared here
93 | IGRAPH_EXPORT const TYPE(igraph_vector) *FUNCTION(igraph_vector, view)(const TYPE(igraph_vector) *v,
| ^~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_pmt.h:26:25: note: in definition of macro ‘CONCAT3x’
26 | #define CONCAT3x(a,b,c) a ## _ ## b ## _ ## c
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_pmt.h:177:31: note: in expansion of macro ‘CONCAT3’
177 | #define FUNCTION(a,c) CONCAT3(a,SHORT,c)
| ^~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h:93:42: note: in expansion of macro ‘FUNCTION’
93 | IGRAPH_EXPORT const TYPE(igraph_vector) *FUNCTION(igraph_vector, view)(const TYPE(igraph_vector) *v,
| ^~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c:259:25: note: ‘edges’ declared here
259 | igraph_vector_int_t edges;
| ^~~~~
In function ‘igraph_i_famous’,
inlined from ‘igraph_famous’ at /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c:437:16:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c:261:5: warning: ‘edges’ may be used uninitialized [-Wmaybe-uninitialized]
261 | igraph_vector_int_view(&edges, data + 3, 2 * no_of_edges);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h: In function ‘igraph_famous’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h:93:51: note: by argument 1 of type ‘const igraph_vector_int_t *’ to ‘igraph_vector_int_view’ declared here
93 | IGRAPH_EXPORT const TYPE(igraph_vector) *FUNCTION(igraph_vector, view)(const TYPE(igraph_vector) *v,
| ^~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_pmt.h:26:25: note: in definition of macro ‘CONCAT3x’
26 | #define CONCAT3x(a,b,c) a ## _ ## b ## _ ## c
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_pmt.h:177:31: note: in expansion of macro ‘CONCAT3’
177 | #define FUNCTION(a,c) CONCAT3(a,SHORT,c)
| ^~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h:93:42: note: in expansion of macro ‘FUNCTION’
93 | IGRAPH_EXPORT const TYPE(igraph_vector) *FUNCTION(igraph_vector, view)(const TYPE(igraph_vector) *v,
| ^~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c:259:25: note: ‘edges’ declared here
259 | igraph_vector_int_t edges;
| ^~~~~
In function ‘igraph_i_famous’,
inlined from ‘igraph_famous’ at /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c:440:16:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c:261:5: warning: ‘edges’ may be used uninitialized [-Wmaybe-uninitialized]
261 | igraph_vector_int_view(&edges, data + 3, 2 * no_of_edges);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h: In function ‘igraph_famous’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h:93:51: note: by argument 1 of type ‘const igraph_vector_int_t *’ to ‘igraph_vector_int_view’ declared here
93 | IGRAPH_EXPORT const TYPE(igraph_vector) *FUNCTION(igraph_vector, view)(const TYPE(igraph_vector) *v,
| ^~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_pmt.h:26:25: note: in definition of macro ‘CONCAT3x’
26 | #define CONCAT3x(a,b,c) a ## _ ## b ## _ ## c
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_pmt.h:177:31: note: in expansion of macro ‘CONCAT3’
177 | #define FUNCTION(a,c) CONCAT3(a,SHORT,c)
| ^~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h:93:42: note: in expansion of macro ‘FUNCTION’
93 | IGRAPH_EXPORT const TYPE(igraph_vector) *FUNCTION(igraph_vector, view)(const TYPE(igraph_vector) *v,
| ^~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c:259:25: note: ‘edges’ declared here
259 | igraph_vector_int_t edges;
| ^~~~~
In function ‘igraph_i_famous’,
inlined from ‘igraph_famous’ at /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c:442:16:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c:261:5: warning: ‘edges’ may be used uninitialized [-Wmaybe-uninitialized]
261 | igraph_vector_int_view(&edges, data + 3, 2 * no_of_edges);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h: In function ‘igraph_famous’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h:93:51: note: by argument 1 of type ‘const igraph_vector_int_t *’ to ‘igraph_vector_int_view’ declared here
93 | IGRAPH_EXPORT const TYPE(igraph_vector) *FUNCTION(igraph_vector, view)(const TYPE(igraph_vector) *v,
| ^~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_pmt.h:26:25: note: in definition of macro ‘CONCAT3x’
26 | #define CONCAT3x(a,b,c) a ## _ ## b ## _ ## c
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_pmt.h:177:31: note: in expansion of macro ‘CONCAT3’
177 | #define FUNCTION(a,c) CONCAT3(a,SHORT,c)
| ^~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h:93:42: note: in expansion of macro ‘FUNCTION’
93 | IGRAPH_EXPORT const TYPE(igraph_vector) *FUNCTION(igraph_vector, view)(const TYPE(igraph_vector) *v,
| ^~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c:259:25: note: ‘edges’ declared here
259 | igraph_vector_int_t edges;
| ^~~~~
In function ‘igraph_i_famous’,
inlined from ‘igraph_famous’ at /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c:444:16:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c:261:5: warning: ‘edges’ may be used uninitialized [-Wmaybe-uninitialized]
261 | igraph_vector_int_view(&edges, data + 3, 2 * no_of_edges);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h: In function ‘igraph_famous’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h:93:51: note: by argument 1 of type ‘const igraph_vector_int_t *’ to ‘igraph_vector_int_view’ declared here
93 | IGRAPH_EXPORT const TYPE(igraph_vector) *FUNCTION(igraph_vector, view)(const TYPE(igraph_vector) *v,
| ^~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_pmt.h:26:25: note: in definition of macro ‘CONCAT3x’
26 | #define CONCAT3x(a,b,c) a ## _ ## b ## _ ## c
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_pmt.h:177:31: note: in expansion of macro ‘CONCAT3’
177 | #define FUNCTION(a,c) CONCAT3(a,SHORT,c)
| ^~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h:93:42: note: in expansion of macro ‘FUNCTION’
93 | IGRAPH_EXPORT const TYPE(igraph_vector) *FUNCTION(igraph_vector, view)(const TYPE(igraph_vector) *v,
| ^~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c:259:25: note: ‘edges’ declared here
259 | igraph_vector_int_t edges;
| ^~~~~
In function ‘igraph_i_famous’,
inlined from ‘igraph_famous’ at /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c:446:16:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c:261:5: warning: ‘edges’ may be used uninitialized [-Wmaybe-uninitialized]
261 | igraph_vector_int_view(&edges, data + 3, 2 * no_of_edges);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h: In function ‘igraph_famous’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h:93:51: note: by argument 1 of type ‘const igraph_vector_int_t *’ to ‘igraph_vector_int_view’ declared here
93 | IGRAPH_EXPORT const TYPE(igraph_vector) *FUNCTION(igraph_vector, view)(const TYPE(igraph_vector) *v,
| ^~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_pmt.h:26:25: note: in definition of macro ‘CONCAT3x’
26 | #define CONCAT3x(a,b,c) a ## _ ## b ## _ ## c
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_pmt.h:177:31: note: in expansion of macro ‘CONCAT3’
177 | #define FUNCTION(a,c) CONCAT3(a,SHORT,c)
| ^~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h:93:42: note: in expansion of macro ‘FUNCTION’
93 | IGRAPH_EXPORT const TYPE(igraph_vector) *FUNCTION(igraph_vector, view)(const TYPE(igraph_vector) *v,
| ^~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c:259:25: note: ‘edges’ declared here
259 | igraph_vector_int_t edges;
| ^~~~~
In function ‘igraph_i_famous’,
inlined from ‘igraph_famous’ at /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c:448:16:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c:261:5: warning: ‘edges’ may be used uninitialized [-Wmaybe-uninitialized]
261 | igraph_vector_int_view(&edges, data + 3, 2 * no_of_edges);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h: In function ‘igraph_famous’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h:93:51: note: by argument 1 of type ‘const igraph_vector_int_t *’ to ‘igraph_vector_int_view’ declared here
93 | IGRAPH_EXPORT const TYPE(igraph_vector) *FUNCTION(igraph_vector, view)(const TYPE(igraph_vector) *v,
| ^~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_pmt.h:26:25: note: in definition of macro ‘CONCAT3x’
26 | #define CONCAT3x(a,b,c) a ## _ ## b ## _ ## c
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_pmt.h:177:31: note: in expansion of macro ‘CONCAT3’
177 | #define FUNCTION(a,c) CONCAT3(a,SHORT,c)
| ^~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h:93:42: note: in expansion of macro ‘FUNCTION’
93 | IGRAPH_EXPORT const TYPE(igraph_vector) *FUNCTION(igraph_vector, view)(const TYPE(igraph_vector) *v,
| ^~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c:259:25: note: ‘edges’ declared here
259 | igraph_vector_int_t edges;
| ^~~~~
In function ‘igraph_i_famous’,
inlined from ‘igraph_famous’ at /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c:450:16:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c:261:5: warning: ‘edges’ may be used uninitialized [-Wmaybe-uninitialized]
261 | igraph_vector_int_view(&edges, data + 3, 2 * no_of_edges);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h: In function ‘igraph_famous’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h:93:51: note: by argument 1 of type ‘const igraph_vector_int_t *’ to ‘igraph_vector_int_view’ declared here
93 | IGRAPH_EXPORT const TYPE(igraph_vector) *FUNCTION(igraph_vector, view)(const TYPE(igraph_vector) *v,
| ^~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_pmt.h:26:25: note: in definition of macro ‘CONCAT3x’
26 | #define CONCAT3x(a,b,c) a ## _ ## b ## _ ## c
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_pmt.h:177:31: note: in expansion of macro ‘CONCAT3’
177 | #define FUNCTION(a,c) CONCAT3(a,SHORT,c)
| ^~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h:93:42: note: in expansion of macro ‘FUNCTION’
93 | IGRAPH_EXPORT const TYPE(igraph_vector) *FUNCTION(igraph_vector, view)(const TYPE(igraph_vector) *v,
| ^~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c:259:25: note: ‘edges’ declared here
259 | igraph_vector_int_t edges;
| ^~~~~
In function ‘igraph_i_famous’,
inlined from ‘igraph_famous’ at /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c:452:16:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c:261:5: warning: ‘edges’ may be used uninitialized [-Wmaybe-uninitialized]
261 | igraph_vector_int_view(&edges, data + 3, 2 * no_of_edges);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h: In function ‘igraph_famous’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h:93:51: note: by argument 1 of type ‘const igraph_vector_int_t *’ to ‘igraph_vector_int_view’ declared here
93 | IGRAPH_EXPORT const TYPE(igraph_vector) *FUNCTION(igraph_vector, view)(const TYPE(igraph_vector) *v,
| ^~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_pmt.h:26:25: note: in definition of macro ‘CONCAT3x’
26 | #define CONCAT3x(a,b,c) a ## _ ## b ## _ ## c
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_pmt.h:177:31: note: in expansion of macro ‘CONCAT3’
177 | #define FUNCTION(a,c) CONCAT3(a,SHORT,c)
| ^~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h:93:42: note: in expansion of macro ‘FUNCTION’
93 | IGRAPH_EXPORT const TYPE(igraph_vector) *FUNCTION(igraph_vector, view)(const TYPE(igraph_vector) *v,
| ^~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c:259:25: note: ‘edges’ declared here
259 | igraph_vector_int_t edges;
| ^~~~~
In function ‘igraph_i_famous’,
inlined from ‘igraph_famous’ at /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c:454:16:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c:261:5: warning: ‘edges’ may be used uninitialized [-Wmaybe-uninitialized]
261 | igraph_vector_int_view(&edges, data + 3, 2 * no_of_edges);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h: In function ‘igraph_famous’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h:93:51: note: by argument 1 of type ‘const igraph_vector_int_t *’ to ‘igraph_vector_int_view’ declared here
93 | IGRAPH_EXPORT const TYPE(igraph_vector) *FUNCTION(igraph_vector, view)(const TYPE(igraph_vector) *v,
| ^~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_pmt.h:26:25: note: in definition of macro ‘CONCAT3x’
26 | #define CONCAT3x(a,b,c) a ## _ ## b ## _ ## c
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_pmt.h:177:31: note: in expansion of macro ‘CONCAT3’
177 | #define FUNCTION(a,c) CONCAT3(a,SHORT,c)
| ^~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h:93:42: note: in expansion of macro ‘FUNCTION’
93 | IGRAPH_EXPORT const TYPE(igraph_vector) *FUNCTION(igraph_vector, view)(const TYPE(igraph_vector) *v,
| ^~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c:259:25: note: ‘edges’ declared here
259 | igraph_vector_int_t edges;
| ^~~~~
In function ‘igraph_i_famous’,
inlined from ‘igraph_famous’ at /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c:456:16:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c:261:5: warning: ‘edges’ may be used uninitialized [-Wmaybe-uninitialized]
261 | igraph_vector_int_view(&edges, data + 3, 2 * no_of_edges);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h: In function ‘igraph_famous’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h:93:51: note: by argument 1 of type ‘const igraph_vector_int_t *’ to ‘igraph_vector_int_view’ declared here
93 | IGRAPH_EXPORT const TYPE(igraph_vector) *FUNCTION(igraph_vector, view)(const TYPE(igraph_vector) *v,
| ^~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_pmt.h:26:25: note: in definition of macro ‘CONCAT3x’
26 | #define CONCAT3x(a,b,c) a ## _ ## b ## _ ## c
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_pmt.h:177:31: note: in expansion of macro ‘CONCAT3’
177 | #define FUNCTION(a,c) CONCAT3(a,SHORT,c)
| ^~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h:93:42: note: in expansion of macro ‘FUNCTION’
93 | IGRAPH_EXPORT const TYPE(igraph_vector) *FUNCTION(igraph_vector, view)(const TYPE(igraph_vector) *v,
| ^~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c:259:25: note: ‘edges’ declared here
259 | igraph_vector_int_t edges;
| ^~~~~
In function ‘igraph_i_famous’,
inlined from ‘igraph_famous’ at /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c:459:16:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c:261:5: warning: ‘edges’ may be used uninitialized [-Wmaybe-uninitialized]
261 | igraph_vector_int_view(&edges, data + 3, 2 * no_of_edges);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h: In function ‘igraph_famous’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h:93:51: note: by argument 1 of type ‘const igraph_vector_int_t *’ to ‘igraph_vector_int_view’ declared here
93 | IGRAPH_EXPORT const TYPE(igraph_vector) *FUNCTION(igraph_vector, view)(const TYPE(igraph_vector) *v,
| ^~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_pmt.h:26:25: note: in definition of macro ‘CONCAT3x’
26 | #define CONCAT3x(a,b,c) a ## _ ## b ## _ ## c
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_pmt.h:177:31: note: in expansion of macro ‘CONCAT3’
177 | #define FUNCTION(a,c) CONCAT3(a,SHORT,c)
| ^~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h:93:42: note: in expansion of macro ‘FUNCTION’
93 | IGRAPH_EXPORT const TYPE(igraph_vector) *FUNCTION(igraph_vector, view)(const TYPE(igraph_vector) *v,
| ^~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c:259:25: note: ‘edges’ declared here
259 | igraph_vector_int_t edges;
| ^~~~~
In function ‘igraph_i_famous’,
inlined from ‘igraph_famous’ at /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c:461:16:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c:261:5: warning: ‘edges’ may be used uninitialized [-Wmaybe-uninitialized]
261 | igraph_vector_int_view(&edges, data + 3, 2 * no_of_edges);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h: In function ‘igraph_famous’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h:93:51: note: by argument 1 of type ‘const igraph_vector_int_t *’ to ‘igraph_vector_int_view’ declared here
93 | IGRAPH_EXPORT const TYPE(igraph_vector) *FUNCTION(igraph_vector, view)(const TYPE(igraph_vector) *v,
| ^~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_pmt.h:26:25: note: in definition of macro ‘CONCAT3x’
26 | #define CONCAT3x(a,b,c) a ## _ ## b ## _ ## c
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_pmt.h:177:31: note: in expansion of macro ‘CONCAT3’
177 | #define FUNCTION(a,c) CONCAT3(a,SHORT,c)
| ^~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h:93:42: note: in expansion of macro ‘FUNCTION’
93 | IGRAPH_EXPORT const TYPE(igraph_vector) *FUNCTION(igraph_vector, view)(const TYPE(igraph_vector) *v,
| ^~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c:259:25: note: ‘edges’ declared here
259 | igraph_vector_int_t edges;
| ^~~~~
In function ‘igraph_i_famous’,
inlined from ‘igraph_famous’ at /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c:463:16:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c:261:5: warning: ‘edges’ may be used uninitialized [-Wmaybe-uninitialized]
261 | igraph_vector_int_view(&edges, data + 3, 2 * no_of_edges);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h: In function ‘igraph_famous’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h:93:51: note: by argument 1 of type ‘const igraph_vector_int_t *’ to ‘igraph_vector_int_view’ declared here
93 | IGRAPH_EXPORT const TYPE(igraph_vector) *FUNCTION(igraph_vector, view)(const TYPE(igraph_vector) *v,
| ^~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_pmt.h:26:25: note: in definition of macro ‘CONCAT3x’
26 | #define CONCAT3x(a,b,c) a ## _ ## b ## _ ## c
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_pmt.h:177:31: note: in expansion of macro ‘CONCAT3’
177 | #define FUNCTION(a,c) CONCAT3(a,SHORT,c)
| ^~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h:93:42: note: in expansion of macro ‘FUNCTION’
93 | IGRAPH_EXPORT const TYPE(igraph_vector) *FUNCTION(igraph_vector, view)(const TYPE(igraph_vector) *v,
| ^~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c:259:25: note: ‘edges’ declared here
259 | igraph_vector_int_t edges;
| ^~~~~
In function ‘igraph_i_famous’,
inlined from ‘igraph_famous’ at /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c:465:16:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c:261:5: warning: ‘edges’ may be used uninitialized [-Wmaybe-uninitialized]
261 | igraph_vector_int_view(&edges, data + 3, 2 * no_of_edges);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h: In function ‘igraph_famous’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h:93:51: note: by argument 1 of type ‘const igraph_vector_int_t *’ to ‘igraph_vector_int_view’ declared here
93 | IGRAPH_EXPORT const TYPE(igraph_vector) *FUNCTION(igraph_vector, view)(const TYPE(igraph_vector) *v,
| ^~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_pmt.h:26:25: note: in definition of macro ‘CONCAT3x’
26 | #define CONCAT3x(a,b,c) a ## _ ## b ## _ ## c
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_pmt.h:177:31: note: in expansion of macro ‘CONCAT3’
177 | #define FUNCTION(a,c) CONCAT3(a,SHORT,c)
| ^~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h:93:42: note: in expansion of macro ‘FUNCTION’
93 | IGRAPH_EXPORT const TYPE(igraph_vector) *FUNCTION(igraph_vector, view)(const TYPE(igraph_vector) *v,
| ^~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c:259:25: note: ‘edges’ declared here
259 | igraph_vector_int_t edges;
| ^~~~~
In function ‘igraph_i_famous’,
inlined from ‘igraph_famous’ at /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c:467:16:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c:261:5: warning: ‘edges’ may be used uninitialized [-Wmaybe-uninitialized]
261 | igraph_vector_int_view(&edges, data + 3, 2 * no_of_edges);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h: In function ‘igraph_famous’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h:93:51: note: by argument 1 of type ‘const igraph_vector_int_t *’ to ‘igraph_vector_int_view’ declared here
93 | IGRAPH_EXPORT const TYPE(igraph_vector) *FUNCTION(igraph_vector, view)(const TYPE(igraph_vector) *v,
| ^~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_pmt.h:26:25: note: in definition of macro ‘CONCAT3x’
26 | #define CONCAT3x(a,b,c) a ## _ ## b ## _ ## c
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_pmt.h:177:31: note: in expansion of macro ‘CONCAT3’
177 | #define FUNCTION(a,c) CONCAT3(a,SHORT,c)
| ^~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h:93:42: note: in expansion of macro ‘FUNCTION’
93 | IGRAPH_EXPORT const TYPE(igraph_vector) *FUNCTION(igraph_vector, view)(const TYPE(igraph_vector) *v,
| ^~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c:259:25: note: ‘edges’ declared here
259 | igraph_vector_int_t edges;
| ^~~~~
In function ‘igraph_i_famous’,
inlined from ‘igraph_famous’ at /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c:469:16:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c:261:5: warning: ‘edges’ may be used uninitialized [-Wmaybe-uninitialized]
261 | igraph_vector_int_view(&edges, data + 3, 2 * no_of_edges);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h: In function ‘igraph_famous’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h:93:51: note: by argument 1 of type ‘const igraph_vector_int_t *’ to ‘igraph_vector_int_view’ declared here
93 | IGRAPH_EXPORT const TYPE(igraph_vector) *FUNCTION(igraph_vector, view)(const TYPE(igraph_vector) *v,
| ^~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_pmt.h:26:25: note: in definition of macro ‘CONCAT3x’
26 | #define CONCAT3x(a,b,c) a ## _ ## b ## _ ## c
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_pmt.h:177:31: note: in expansion of macro ‘CONCAT3’
177 | #define FUNCTION(a,c) CONCAT3(a,SHORT,c)
| ^~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h:93:42: note: in expansion of macro ‘FUNCTION’
93 | IGRAPH_EXPORT const TYPE(igraph_vector) *FUNCTION(igraph_vector, view)(const TYPE(igraph_vector) *v,
| ^~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c:259:25: note: ‘edges’ declared here
259 | igraph_vector_int_t edges;
| ^~~~~
In function ‘igraph_i_famous’,
inlined from ‘igraph_famous’ at /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c:474:16:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c:261:5: warning: ‘edges’ may be used uninitialized [-Wmaybe-uninitialized]
261 | igraph_vector_int_view(&edges, data + 3, 2 * no_of_edges);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h: In function ‘igraph_famous’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h:93:51: note: by argument 1 of type ‘const igraph_vector_int_t *’ to ‘igraph_vector_int_view’ declared here
93 | IGRAPH_EXPORT const TYPE(igraph_vector) *FUNCTION(igraph_vector, view)(const TYPE(igraph_vector) *v,
| ^~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_pmt.h:26:25: note: in definition of macro ‘CONCAT3x’
26 | #define CONCAT3x(a,b,c) a ## _ ## b ## _ ## c
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_pmt.h:177:31: note: in expansion of macro ‘CONCAT3’
177 | #define FUNCTION(a,c) CONCAT3(a,SHORT,c)
| ^~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_vector_pmt.h:93:42: note: in expansion of macro ‘FUNCTION’
93 | IGRAPH_EXPORT const TYPE(igraph_vector) *FUNCTION(igraph_vector, view)(const TYPE(igraph_vector) *v,
| ^~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/constructors/famous.c:259:25: note: ‘edges’ declared here
259 | igraph_vector_int_t edges;
| ^~~~~
[ 70%] Building C object src/CMakeFiles/igraph.dir/constructors/full.c.o
[ 70%] Building C object src/CMakeFiles/igraph.dir/constructors/generalized_petersen.c.o
[ 70%] Building C object src/CMakeFiles/igraph.dir/constructors/kautz.c.o
[ 70%] Building C object src/CMakeFiles/igraph.dir/constructors/lattices.c.o
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[ 70%] Building C object src/CMakeFiles/igraph.dir/constructors/linegraph.c.o
[ 70%] Building C object src/CMakeFiles/igraph.dir/constructors/prufer.c.o
[ 70%] Building C object src/CMakeFiles/igraph.dir/constructors/regular.c.o
[ 70%] Building C object src/CMakeFiles/igraph.dir/constructors/trees.c.o
[ 70%] Building C object src/CMakeFiles/igraph.dir/games/barabasi.c.o
[ 70%] Building C object src/CMakeFiles/igraph.dir/games/callaway_traits.c.o
[ 70%] Building C object src/CMakeFiles/igraph.dir/games/chung_lu.c.o
[ 70%] Building C object src/CMakeFiles/igraph.dir/games/citations.c.o
[ 70%] Building C object src/CMakeFiles/igraph.dir/games/correlated.c.o
[ 73%] Building CXX object src/CMakeFiles/igraph.dir/games/degree_sequence_vl/gengraph_degree_sequence.cpp.o
[ 73%] Building CXX object src/CMakeFiles/igraph.dir/games/degree_sequence_vl/gengraph_graph_molloy_hash.cpp.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/games/degree_sequence_vl/gengraph_graph_molloy_hash.cpp: In member function ‘igraph_integer_t gengraph::graph_molloy_hash::shuffle(igraph_integer_t, igraph_integer_t, int)’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/games/degree_sequence_vl/gengraph_graph_molloy_hash.cpp:320:34: warning: comparison of integer expressions of different signedness: ‘igraph_integer_t’ {aka ‘long int’} and ‘long unsigned int’ [-Wsign-compare]
320 | if (nb_swaps + swaps > next) {
| ~~~~~~~~~~~~~~~~~^~~~~~
[ 73%] Building CXX object src/CMakeFiles/igraph.dir/games/degree_sequence_vl/gengraph_graph_molloy_optimized.cpp.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/games/degree_sequence_vl/gengraph_graph_molloy_optimized.cpp: In member function ‘bool gengraph::graph_molloy_opt::make_connected()’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/games/degree_sequence_vl/gengraph_graph_molloy_optimized.cpp:539:38: warning: pointer ‘trees’ may be used after ‘void operator delete [](void*)’ [-Wuse-after-free]
539 | return (trees == ffub || ((trees + 1) == ffub && fatty_edge.from < 0));
| ~~~~~~~^~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/games/degree_sequence_vl/gengraph_graph_molloy_optimized.cpp:536:14: note: call to ‘void operator delete [](void*)’ here
536 | delete[] buff;
| ^~~~
[ 73%] Building CXX object src/CMakeFiles/igraph.dir/games/degree_sequence_vl/gengraph_mr-connected.cpp.o
[ 73%] Building C object src/CMakeFiles/igraph.dir/games/degree_sequence.c.o
In function ‘igraph_i_degree_sequence_game_configuration’,
inlined from ‘igraph_degree_sequence_game’ at /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/games/degree_sequence.c:783:16:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/games/degree_sequence.c:92:53: warning: ‘bag2’ may be used uninitialized [-Wmaybe-uninitialized]
92 | igraph_vector_int_push_back(&edges, bag2[to]); /* ditto */
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/games/degree_sequence.c: In function ‘igraph_degree_sequence_game’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/games/degree_sequence.c:44:30: note: ‘bag2’ was declared here
44 | igraph_integer_t *bag1, *bag2;
| ^~~~
[ 73%] Building C object src/CMakeFiles/igraph.dir/games/dotproduct.c.o
[ 73%] Building C object src/CMakeFiles/igraph.dir/games/erdos_renyi.c.o
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[ 73%] Building C object src/CMakeFiles/igraph.dir/games/grg.c.o
[ 73%] Building C object src/CMakeFiles/igraph.dir/games/growing_random.c.o
[ 73%] Building C object src/CMakeFiles/igraph.dir/games/islands.c.o
[ 73%] Building C object src/CMakeFiles/igraph.dir/games/k_regular.c.o
[ 73%] Building C object src/CMakeFiles/igraph.dir/games/preference.c.o
[ 73%] Building C object src/CMakeFiles/igraph.dir/games/recent_degree.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/games/recent_degree.c: In function ‘igraph_recent_degree_aging_game’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/games/recent_degree.c:331:23: warning: ‘no_of_neighbors’ may be used uninitialized [-Wmaybe-uninitialized]
331 | for (j = 0; j < no_of_neighbors; j++) {
| ~~^~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/games/recent_degree.c:246:22: note: ‘no_of_neighbors’ was declared here
246 | igraph_integer_t no_of_neighbors;
| ^~~~~~~~~~~~~~~
[ 73%] Building C object src/CMakeFiles/igraph.dir/games/sbm.c.o
[ 73%] Building C object src/CMakeFiles/igraph.dir/games/static_fitness.c.o
[ 73%] Building C object src/CMakeFiles/igraph.dir/games/tree.c.o
[ 73%] Building C object src/CMakeFiles/igraph.dir/games/watts_strogatz.c.o
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[ 76%] Building C object src/CMakeFiles/igraph.dir/centrality/centrality_other.c.o
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[ 76%] Building C object src/CMakeFiles/igraph.dir/centrality/closeness.c.o
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[ 76%] Building C object src/CMakeFiles/igraph.dir/centrality/eigenvector.c.o
[ 76%] Building C object src/CMakeFiles/igraph.dir/centrality/hub_authority.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/centrality/hub_authority.c: In function ‘igraph_hub_and_authority_scores’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/centrality/hub_authority.c:392:86: warning: ‘my_hub_vector_p’ may be used uninitialized [-Wmaybe-uninitialized]
392 | igraph_i_kleinberg_unweighted_hub_to_auth(no_of_nodes, authority_vector, &VECTOR(*my_hub_vector_p)[0], &inadjlist);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/centrality/hub_authority.c:222:22: note: ‘my_hub_vector_p’ was declared here
222 | igraph_vector_t *my_hub_vector_p;
| ^~~~~~~~~~~~~~~
[ 76%] Building C object src/CMakeFiles/igraph.dir/centrality/pagerank.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/centrality/pagerank.c: In function ‘igraph_i_personalized_pagerank_arpack’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/centrality/pagerank.c:603:9: warning: ‘reset_sum’ may be used uninitialized [-Wmaybe-uninitialized]
603 | igraph_vector_scale(&normalized_reset, 1.0 / reset_sum);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/centrality/pagerank.c:498:19: note: ‘reset_sum’ was declared here
498 | igraph_real_t reset_sum; /* used only when reset != NULL */
| ^~~~~~~~~
[ 76%] Building CXX object src/CMakeFiles/igraph.dir/centrality/truss.cpp.o
[ 76%] Building CXX object src/CMakeFiles/igraph.dir/centrality/prpack.cpp.o
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[ 76%] Building CXX object src/CMakeFiles/igraph.dir/community/infomap/infomap_Greedy.cc.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/community/infomap/infomap_Greedy.cc: In member function ‘bool Greedy::optimize()’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/community/infomap/infomap_Greedy.cc:126:36: warning: comparison of integer expressions of different signedness: ‘__gnu_cxx::__alloc_traits<std::allocator<long int>, long int>::value_type’ {aka ‘long int’} and ‘igraph_uint_t’ {aka ‘long unsigned int’} [-Wsign-compare]
126 | if (redirect[nb_M] >= offset) {
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/community/infomap/infomap_Greedy.cc:143:32: warning: comparison of integer expressions of different signedness: ‘__gnu_cxx::__alloc_traits<std::allocator<long int>, long int>::value_type’ {aka ‘long int’} and ‘igraph_uint_t’ {aka ‘long unsigned int’} [-Wsign-compare]
143 | if (redirect[nb_M] >= offset) {
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/community/infomap/infomap_Greedy.cc:184:28: warning: comparison of integer expressions of different signedness: ‘__gnu_cxx::__alloc_traits<std::allocator<long int>, long int>::value_type’ {aka ‘long int’} and ‘igraph_uint_t’ {aka ‘long unsigned int’} [-Wsign-compare]
184 | if (redirect[oldM] >= offset) {
[ 76%] Building CXX object src/CMakeFiles/igraph.dir/community/infomap/infomap.cc.o
[ 76%] Building C object src/CMakeFiles/igraph.dir/community/label_propagation.c.o
[ 79%] Building C object src/CMakeFiles/igraph.dir/community/leading_eigenvector.c.o
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/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/io/parsers/dl-lexer.c:2158:24: warning: ‘yy_fatal_error’ defined but not used [-Wunused-function]
2158 | static void yynoreturn yy_fatal_error (const char* msg , yyscan_t yyscanner)
| ^~~~~~~~~~~~~~
[ 82%] Building C object src/CMakeFiles/igraph.dir/io/parsers/dl-parser.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/io/parsers/dl-parser.c: In function ‘igraph_dl_yyparse’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/io/parsers/dl-parser.c:351:21: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
351 | # define YYMALLOC malloc
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/io/parsers/dl-parser.c:337:25: note: in expansion of macro ‘YYMALLOC’
337 | # define YYSTACK_ALLOC YYMALLOC
| ^~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/io/parsers/dl-parser.c:1963:30: note: in expansion of macro ‘YYSTACK_ALLOC’
1963 | yymsg = (char *) YYSTACK_ALLOC (yyalloc);
| ^~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/internal/hacks.h:36,
from /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/io/parsers/dl-parser.c:140:
/usr/include/stdlib.h:672:14: note: in a call to allocation function ‘malloc’ declared here
672 | extern void *malloc (size_t __size) __THROW __attribute_malloc__
| ^~~~~~
[ 82%] Building C object src/CMakeFiles/igraph.dir/io/parsers/gml-lexer.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/io/parsers/gml-lexer.c:1971:24: warning: ‘yy_fatal_error’ defined but not used [-Wunused-function]
1971 | static void yynoreturn yy_fatal_error (const char* msg , yyscan_t yyscanner)
| ^~~~~~~~~~~~~~
[ 82%] Building C object src/CMakeFiles/igraph.dir/io/parsers/gml-parser.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/io/parsers/gml-parser.c: In function ‘igraph_gml_yyparse’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/io/parsers/gml-parser.c:353:21: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
353 | # define YYMALLOC malloc
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/io/parsers/gml-parser.c:339:25: note: in expansion of macro ‘YYMALLOC’
339 | # define YYSTACK_ALLOC YYMALLOC
| ^~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/io/parsers/gml-parser.c:1563:30: note: in expansion of macro ‘YYSTACK_ALLOC’
1563 | yymsg = (char *) YYSTACK_ALLOC (yyalloc);
| ^~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_memory.h:30,
from /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/io/parsers/gml-parser.c:125:
/usr/include/stdlib.h:672:14: note: in a call to allocation function ‘malloc’ declared here
672 | extern void *malloc (size_t __size) __THROW __attribute_malloc__
| ^~~~~~
[ 85%] Building C object src/CMakeFiles/igraph.dir/io/parsers/lgl-lexer.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/io/parsers/lgl-lexer.c:1909:24: warning: ‘yy_fatal_error’ defined but not used [-Wunused-function]
1909 | static void yynoreturn yy_fatal_error (const char* msg , yyscan_t yyscanner)
| ^~~~~~~~~~~~~~
[ 85%] Building C object src/CMakeFiles/igraph.dir/io/parsers/lgl-parser.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/io/parsers/lgl-parser.c: In function ‘igraph_lgl_yyparse’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/io/parsers/lgl-parser.c:329:21: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
329 | # define YYMALLOC malloc
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/io/parsers/lgl-parser.c:315:25: note: in expansion of macro ‘YYMALLOC’
315 | # define YYSTACK_ALLOC YYMALLOC
| ^~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/io/parsers/lgl-parser.c:1508:30: note: in expansion of macro ‘YYSTACK_ALLOC’
1508 | yymsg = (char *) YYSTACK_ALLOC (yyalloc);
| ^~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_memory.h:30,
from /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/io/parsers/lgl-parser.c:121:
/usr/include/stdlib.h:672:14: note: in a call to allocation function ‘malloc’ declared here
672 | extern void *malloc (size_t __size) __THROW __attribute_malloc__
| ^~~~~~
[ 85%] Building C object src/CMakeFiles/igraph.dir/io/parsers/ncol-lexer.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/io/parsers/ncol-lexer.c:1904:24: warning: ‘yy_fatal_error’ defined but not used [-Wunused-function]
1904 | static void yynoreturn yy_fatal_error (const char* msg , yyscan_t yyscanner)
| ^~~~~~~~~~~~~~
[ 85%] Building C object src/CMakeFiles/igraph.dir/io/parsers/ncol-parser.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/io/parsers/ncol-parser.c: In function ‘igraph_ncol_yyparse’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/io/parsers/ncol-parser.c:328:21: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
328 | # define YYMALLOC malloc
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/io/parsers/ncol-parser.c:314:25: note: in expansion of macro ‘YYMALLOC’
314 | # define YYSTACK_ALLOC YYMALLOC
| ^~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/io/parsers/ncol-parser.c:1499:30: note: in expansion of macro ‘YYSTACK_ALLOC’
1499 | yymsg = (char *) YYSTACK_ALLOC (yyalloc);
| ^~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_memory.h:30,
from /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/io/parsers/ncol-parser.c:119:
/usr/include/stdlib.h:672:14: note: in a call to allocation function ‘malloc’ declared here
672 | extern void *malloc (size_t __size) __THROW __attribute_malloc__
| ^~~~~~
[ 85%] Building C object src/CMakeFiles/igraph.dir/io/parsers/pajek-lexer.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/io/parsers/pajek-lexer.c:2308:24: warning: ‘yy_fatal_error’ defined but not used [-Wunused-function]
2308 | static void yynoreturn yy_fatal_error (const char* msg , yyscan_t yyscanner)
| ^~~~~~~~~~~~~~
[ 85%] Building C object src/CMakeFiles/igraph.dir/io/parsers/pajek-parser.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/io/parsers/pajek-parser.c: In function ‘igraph_pajek_yyparse’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/io/parsers/pajek-parser.c:460:21: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
460 | # define YYMALLOC malloc
| ^
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/io/parsers/pajek-parser.c:446:25: note: in expansion of macro ‘YYMALLOC’
446 | # define YYSTACK_ALLOC YYMALLOC
| ^~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/io/parsers/pajek-parser.c:2360:30: note: in expansion of macro ‘YYSTACK_ALLOC’
2360 | yymsg = (char *) YYSTACK_ALLOC (yyalloc);
| ^~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/include/igraph_memory.h:30,
from /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/io/parsers/pajek-parser.c:208:
/usr/include/stdlib.h:672:14: note: in a call to allocation function ‘malloc’ declared here
672 | extern void *malloc (size_t __size) __THROW __attribute_malloc__
| ^~~~~~
[ 85%] Building C object src/CMakeFiles/igraph.dir/layout/circular.c.o
[ 85%] Building C object src/CMakeFiles/igraph.dir/layout/davidson_harel.c.o
[ 85%] Building CXX object src/CMakeFiles/igraph.dir/layout/drl/DensityGrid.cpp.o
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[ 85%] Building CXX object src/CMakeFiles/igraph.dir/layout/drl/drl_graph_3d.cpp.o
[ 85%] Building CXX object src/CMakeFiles/igraph.dir/layout/drl/drl_layout.cpp.o
[ 85%] Building CXX object src/CMakeFiles/igraph.dir/layout/drl/drl_layout_3d.cpp.o
[ 85%] Building C object src/CMakeFiles/igraph.dir/layout/fruchterman_reingold.c.o
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[ 91%] Building C object src/CMakeFiles/igraph.dir/paths/unweighted.c.o
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[ 91%] Building C object src/CMakeFiles/igraph.dir/paths/widest_paths.c.o
[ 94%] Building C object src/CMakeFiles/igraph.dir/properties/basic_properties.c.o
[ 94%] Building C object src/CMakeFiles/igraph.dir/properties/complete.c.o
[ 94%] Building C object src/CMakeFiles/igraph.dir/properties/constraint.c.o
[ 94%] Building C object src/CMakeFiles/igraph.dir/properties/convergence_degree.c.o
[ 94%] Building C object src/CMakeFiles/igraph.dir/properties/dag.c.o
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[ 94%] Building C object src/CMakeFiles/igraph.dir/properties/ecc.c.o
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[ 94%] Building C object src/CMakeFiles/igraph.dir/properties/loops.c.o
[ 94%] Building C object src/CMakeFiles/igraph.dir/properties/multiplicity.c.o
[ 94%] Building C object src/CMakeFiles/igraph.dir/properties/neighborhood.c.o
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[ 94%] Building CXX object src/CMakeFiles/igraph.dir/isomorphism/bliss.cc.o
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[ 94%] Building C object src/CMakeFiles/igraph.dir/isomorphism/queries.c.o
[ 94%] Building C object src/CMakeFiles/igraph.dir/isomorphism/vf2.c.o
[ 97%] Building C object src/CMakeFiles/igraph.dir/misc/bipartite.c.o
[ 97%] Building C object src/CMakeFiles/igraph.dir/misc/chordality.c.o
[ 97%] Building C object src/CMakeFiles/igraph.dir/misc/cocitation.c.o
[ 97%] Building C object src/CMakeFiles/igraph.dir/misc/coloring.c.o
[ 97%] Building C object src/CMakeFiles/igraph.dir/misc/conversion.c.o
[ 97%] Building C object src/CMakeFiles/igraph.dir/misc/cycle_bases.c.o
[ 97%] Building CXX object src/CMakeFiles/igraph.dir/misc/degree_sequence.cpp.o
[ 97%] Building C object src/CMakeFiles/igraph.dir/misc/embedding.c.o
[ 97%] Building C object src/CMakeFiles/igraph.dir/misc/feedback_arc_set.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/misc/feedback_arc_set.c: In function ‘igraph_i_find_cycle’:
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/misc/feedback_arc_set.c:167:13: warning: ‘ea’ may be used uninitialized [-Wmaybe-uninitialized]
167 | igraph_vector_int_push_back(edges, ea);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/misc/feedback_arc_set.c:61:22: note: ‘ea’ was declared here
61 | igraph_integer_t ea, va;
| ^~
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/misc/feedback_arc_set.c:154:35: warning: ‘va’ may be used uninitialized [-Wmaybe-uninitialized]
154 | while (VECTOR(vpath)[i-1] != va) i--;
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/misc/feedback_arc_set.c:61:26: note: ‘va’ was declared here
61 | igraph_integer_t ea, va;
| ^~
[ 97%] Building C object src/CMakeFiles/igraph.dir/misc/graphicality.c.o
[ 97%] Building C object src/CMakeFiles/igraph.dir/misc/matching.c.o
[ 97%] Building C object src/CMakeFiles/igraph.dir/misc/microscopic_update.c.o
[ 97%] Building C object src/CMakeFiles/igraph.dir/misc/mixing.c.o
[ 97%] Building C object src/CMakeFiles/igraph.dir/misc/motifs.c.o
[ 97%] Building CXX object src/CMakeFiles/igraph.dir/misc/order_cycle.cpp.o
[ 97%] Building C object src/CMakeFiles/igraph.dir/misc/other.c.o
[ 97%] Building C object src/CMakeFiles/igraph.dir/misc/power_law_fit.c.o
[ 97%] Building C object src/CMakeFiles/igraph.dir/misc/scan.c.o
/home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/src/misc/scan.c:76:23: warning: ‘igraph_i_trans4_il_simplify’ defined but not used [-Wunused-function]
76 | static igraph_error_t igraph_i_trans4_il_simplify(const igraph_t *graph, igraph_inclist_t *il,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 97%] Building C object src/CMakeFiles/igraph.dir/misc/sir.c.o
[ 97%] Building C object src/CMakeFiles/igraph.dir/misc/spanning_trees.c.o
[ 97%] Building C object src/CMakeFiles/igraph.dir/internal/glpk_support.c.o
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[100%] Building C object src/CMakeFiles/igraph.dir/internal/zeroin.c.o
[100%] Building C object src/CMakeFiles/igraph.dir/version.c.o
[100%] Linking CXX static library libigraph.a
[100%] Built target igraph
[100%] Building C object tests/CMakeFiles/test_utilities.dir/unit/test_utilities.c.o
[100%] Built target test_utilities
-- Install configuration: "Release"
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/lib64/libigraph.a
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_constants.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_vector_ptr.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_vector_list.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_dqueue_pmt.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_cocitation.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_epidemics.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_hrg.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_sparsemat.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_neighborhood.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_mixing.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_random.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_blas.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_graphicality.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_attributes.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_lapack.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_flow.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_layout.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_microscopic_update.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_topology.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_vector_pmt.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_arpack.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_dqueue.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_psumtree.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_bipartite.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_progress.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_decls.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_cycles.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_types.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_stack.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_community.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_structural.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_scan.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_visitor.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_transitivity.h
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-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_centrality.h
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-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_datatype.h
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-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_games.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_coloring.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_graphlets.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_interrupt.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_operators.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_constructors.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_bitset_list.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_nongraph.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_memory.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_statusbar.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_components.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_array.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_cliques.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_matrix_pmt.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_bitset.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_iterators.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_error.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_embedding.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_vector.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_matrix.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_pmt_off.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_eigen.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_stack_pmt.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_qsort.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_cohesive_blocks.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_interface.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_strvector.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_pmt.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_adjlist.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_motifs.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_eulerian.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_matching.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_lsap.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_matrix_list.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_separators.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_paths.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_foreign.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_complex.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_reachability.h
-- Up-to-date: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_version.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_threading.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_config.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/include/igraph/igraph_export.h
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/lib64/pkgconfig/igraph.pc
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/lib64/cmake/igraph/igraph-config.cmake
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/lib64/cmake/igraph/igraph-config-version.cmake
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/lib64/cmake/igraph/igraph-targets.cmake
-- Installing: /home/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/inst/lib64/cmake/igraph/igraph-targets-release.cmake
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Rigraphlib)
Rigraphlib.Rcheck/Rigraphlib-Ex.timings
| name | user | system | elapsed | |
| pkgconfig | 0.003 | 0.000 | 0.003 | |