##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data RSVSim
###
##############################################################################
##############################################################################
* checking for file ‘RSVSim/DESCRIPTION’ ... OK
* preparing ‘RSVSim’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘vignette.Rnw’ using Sweave
Loading required package: Biostrings
Loading required package: BiocGenerics
Loading required package: generics
Attaching package: ‘generics’
The following objects are masked from ‘package:base’:
as.difftime, as.factor, as.ordered, intersect, is.element, setdiff,
setequal, union
Attaching package: ‘BiocGenerics’
The following objects are masked from ‘package:stats’:
IQR, mad, sd, var, xtabs
The following objects are masked from ‘package:base’:
Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
as.data.frame, basename, cbind, colnames, dirname, do.call, duplicated,
eval, evalq, get, grep, grepl, is.unsorted, lapply, mapply, match, mget,
order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply,
saveRDS, table, tapply, unique, unsplit, which.max, which.min
Loading required package: S4Vectors
Loading required package: stats4
Attaching package: ‘S4Vectors’
The following object is masked from ‘package:utils’:
findMatches
The following objects are masked from ‘package:base’:
I, expand.grid, unname
Loading required package: IRanges
Loading required package: XVector
Loading required package: GenomeInfoDb
Attaching package: ‘Biostrings’
The following object is masked from ‘package:base’:
strsplit
Loading required package: GenomicRanges
Sensitivity: 0%
Precision: 0%
Error: processing vignette 'vignette.Rnw' failed with diagnostics:
chunk 25 (label = comparisonExample4)
Error in unlist(substitutionMatrix, substitutionMatrix) :
'recursive' must be a length-1 vector
--- failed re-building ‘vignette.Rnw’
SUMMARY: processing the following file failed:
‘vignette.Rnw’
Error: Vignette re-building failed.
Execution halted