Back to Multiple platform build/check report for BioC 3.21: simplified long |
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This page was generated on 2025-03-17 11:38 -0400 (Mon, 17 Mar 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences" | 4545 |
lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" | 4576 |
kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" | 4528 |
kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4459 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1532/2313 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
PCAtools 2.19.0 (landing page) Kevin Blighe
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | ||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | ![]() | ||||||||
kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
To the developers/maintainers of the PCAtools package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/PCAtools.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: PCAtools |
Version: 2.19.0 |
Command: chmod a+r PCAtools -R && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data PCAtools |
StartedAt: 2025-03-16 20:37:10 -0400 (Sun, 16 Mar 2025) |
EndedAt: 2025-03-16 20:41:34 -0400 (Sun, 16 Mar 2025) |
EllapsedTime: 264.4 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r PCAtools -R && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data PCAtools ### ############################################################################## ############################################################################## * checking for file 'PCAtools/DESCRIPTION' ... OK * preparing 'PCAtools': * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'PCAtools.Rmd' using rmarkdown Warning: ggrepel: 18 unlabeled data points (too many overlaps). Consider increasing max.overlaps Warning: ggrepel: 23 unlabeled data points (too many overlaps). Consider increasing max.overlaps Quitting from PCAtools.Rmd:406-426 [ex9] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `loadNamespace()`: ! there is no package called 'proj4' --- Backtrace: ▆ 1. ├─PCAtools::biplot(...) 2. └─base::loadNamespace(x) 3. ├─base::namespaceImport(...) 4. └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) 5. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) 6. └─base (local) withOneRestart(expr, restarts[[1L]]) 7. └─base (local) doWithOneRestart(return(expr), restart) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'PCAtools.Rmd' failed with diagnostics: there is no package called 'proj4' --- failed re-building 'PCAtools.Rmd' SUMMARY: processing the following file failed: 'PCAtools.Rmd' Error: Vignette re-building failed. Execution halted