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This page was generated on 2025-03-17 11:38 -0400 (Mon, 17 Mar 2025).

HostnameOSArch (*)R versionInstalled pkgs
palomino7Windows Server 2022 Datacenterx64R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences" 4545
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" 4576
kjohnson3macOS 13.7.1 Venturaarm64R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" 4528
kunpeng2Linux (openEuler 24.03 LTS)aarch64R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" 4459
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1532/2313HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
PCAtools 2.19.0  (landing page)
Kevin Blighe
Snapshot Date: 2025-03-16 13:40 -0400 (Sun, 16 Mar 2025)
git_url: https://git.bioconductor.org/packages/PCAtools
git_branch: devel
git_last_commit: fb5bb35
git_last_commit_date: 2024-10-29 10:33:59 -0400 (Tue, 29 Oct 2024)
palomino7Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.1 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 24.03 LTS) / aarch64  OK    OK    OK  


BUILD results for PCAtools on palomino7

To the developers/maintainers of the PCAtools package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/PCAtools.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: PCAtools
Version: 2.19.0
Command: chmod a+r PCAtools -R && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data PCAtools
StartedAt: 2025-03-16 20:37:10 -0400 (Sun, 16 Mar 2025)
EndedAt: 2025-03-16 20:41:34 -0400 (Sun, 16 Mar 2025)
EllapsedTime: 264.4 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r PCAtools -R && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data PCAtools
###
##############################################################################
##############################################################################


* checking for file 'PCAtools/DESCRIPTION' ... OK
* preparing 'PCAtools':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'PCAtools.Rmd' using rmarkdown
Warning: ggrepel: 18 unlabeled data points (too many overlaps). Consider increasing max.overlaps
Warning: ggrepel: 23 unlabeled data points (too many overlaps). Consider increasing max.overlaps

Quitting from PCAtools.Rmd:406-426 [ex9]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'proj4'
---
Backtrace:
    ▆
 1. ├─PCAtools::biplot(...)
 2. └─base::loadNamespace(x)
 3.   ├─base::namespaceImport(...)
 4.   └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
 5.     └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
 6.       └─base (local) withOneRestart(expr, restarts[[1L]])
 7.         └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'PCAtools.Rmd' failed with diagnostics:
there is no package called 'proj4'
--- failed re-building 'PCAtools.Rmd'

SUMMARY: processing the following file failed:
  'PCAtools.Rmd'

Error: Vignette re-building failed.
Execution halted