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This page was generated on 2025-03-17 11:37 -0400 (Mon, 17 Mar 2025).

HostnameOSArch (*)R versionInstalled pkgs
palomino7Windows Server 2022 Datacenterx64R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences" 4545
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" 4576
kjohnson3macOS 13.7.1 Venturaarm64R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" 4528
kunpeng2Linux (openEuler 24.03 LTS)aarch64R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" 4459
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1453/2313HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
OGRE 1.11.0  (landing page)
Sven Berres
Snapshot Date: 2025-03-16 13:40 -0400 (Sun, 16 Mar 2025)
git_url: https://git.bioconductor.org/packages/OGRE
git_branch: devel
git_last_commit: 817241b
git_last_commit_date: 2024-10-29 11:07:40 -0400 (Tue, 29 Oct 2024)
palomino7Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson3macOS 13.7.1 Ventura / arm64  OK    ERROR  skippedskipped
kunpeng2Linux (openEuler 24.03 LTS) / aarch64  OK    ERROR  skipped


BUILD results for OGRE on palomino7

To the developers/maintainers of the OGRE package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/OGRE.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: OGRE
Version: 1.11.0
Command: chmod a+r OGRE -R && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data OGRE
StartedAt: 2025-03-16 20:22:26 -0400 (Sun, 16 Mar 2025)
EndedAt: 2025-03-16 20:24:07 -0400 (Sun, 16 Mar 2025)
EllapsedTime: 100.5 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r OGRE -R && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data OGRE
###
##############################################################################
##############################################################################


* checking for file 'OGRE/DESCRIPTION' ... OK
* preparing 'OGRE':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'OGRE.Rmd' using rmarkdown

Quitting from OGRE.Rmd:128-131 [gvizPlot]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `errorHandler()`:
! Internal Server Error
---
Backtrace:
     ▆
  1. └─OGRE::gvizPlot(...)
  2.   └─Gviz::IdeogramTrack(genome = "hg38", chromosome = chr)
  3.     └─methods::new(...)
  4.       ├─methods::initialize(value, ...)
  5.       └─Gviz::initialize(value, ...)
  6.         └─Gviz (local) .local(.Object, ...)
  7.           └─Gviz:::.cacheGenomes(genome = genome)
  8.             ├─Gviz::.doCache(...)
  9.             │ ├─BiocGenerics::eval(expression, envir = callEnv)
 10.             │ └─base::eval(expression, envir = callEnv)
 11.             │   └─base::eval(expression, envir = callEnv)
 12.             ├─rtracklayer::getTable(query)
 13.             └─rtracklayer::getTable(query)
 14.               └─rtracklayer (local) .local(object, ...)
 15.                 ├─restfulr::read(url$getData$track, query)
 16.                 └─restfulr::read(url$getData$track, query)
 17.                   ├─base::tryCatch(...)
 18.                   │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
 19.                   │   └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 20.                   │     └─base (local) doTryCatch(return(expr), name, parentenv, handler)
 21.                   └─x@protocol$read(x, cacheInfo)
 22.                     └─restfulr:::handleResponse(content, reader, cache.info, x@errorHandler)
 23.                       └─restfulr (local) errorHandler(responseError)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'OGRE.Rmd' failed with diagnostics:
Internal Server Error

--- failed re-building 'OGRE.Rmd'

SUMMARY: processing the following file failed:
  'OGRE.Rmd'

Error: Vignette re-building failed.
Execution halted