Back to Multiple platform build/check report for BioC 3.21: simplified long |
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This page was generated on 2025-03-17 11:37 -0400 (Mon, 17 Mar 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences" | 4545 |
lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" | 4576 |
kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" | 4528 |
kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4459 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1453/2313 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
OGRE 1.11.0 (landing page) Sven Berres
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | ||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
To the developers/maintainers of the OGRE package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/OGRE.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: OGRE |
Version: 1.11.0 |
Command: chmod a+r OGRE -R && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data OGRE |
StartedAt: 2025-03-16 20:22:26 -0400 (Sun, 16 Mar 2025) |
EndedAt: 2025-03-16 20:24:07 -0400 (Sun, 16 Mar 2025) |
EllapsedTime: 100.5 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r OGRE -R && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data OGRE ### ############################################################################## ############################################################################## * checking for file 'OGRE/DESCRIPTION' ... OK * preparing 'OGRE': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'OGRE.Rmd' using rmarkdown Quitting from OGRE.Rmd:128-131 [gvizPlot] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `errorHandler()`: ! Internal Server Error --- Backtrace: ▆ 1. └─OGRE::gvizPlot(...) 2. └─Gviz::IdeogramTrack(genome = "hg38", chromosome = chr) 3. └─methods::new(...) 4. ├─methods::initialize(value, ...) 5. └─Gviz::initialize(value, ...) 6. └─Gviz (local) .local(.Object, ...) 7. └─Gviz:::.cacheGenomes(genome = genome) 8. ├─Gviz::.doCache(...) 9. │ ├─BiocGenerics::eval(expression, envir = callEnv) 10. │ └─base::eval(expression, envir = callEnv) 11. │ └─base::eval(expression, envir = callEnv) 12. ├─rtracklayer::getTable(query) 13. └─rtracklayer::getTable(query) 14. └─rtracklayer (local) .local(object, ...) 15. ├─restfulr::read(url$getData$track, query) 16. └─restfulr::read(url$getData$track, query) 17. ├─base::tryCatch(...) 18. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) 19. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 20. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) 21. └─x@protocol$read(x, cacheInfo) 22. └─restfulr:::handleResponse(content, reader, cache.info, x@errorHandler) 23. └─restfulr (local) errorHandler(responseError) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'OGRE.Rmd' failed with diagnostics: Internal Server Error --- failed re-building 'OGRE.Rmd' SUMMARY: processing the following file failed: 'OGRE.Rmd' Error: Vignette re-building failed. Execution halted