Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-01-14 11:48 -0500 (Tue, 14 Jan 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" | 4767 |
palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" | 4487 |
lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4450 |
kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4405 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" | 4398 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1260/2281 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
MineICA 1.47.0 (landing page) Anne Biton
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
palomino7 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | ERROR | skipped | ||||||||||
To the developers/maintainers of the MineICA package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MineICA.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
Package: MineICA |
Version: 1.47.0 |
Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data MineICA |
StartedAt: 2025-01-14 00:28:23 -0000 (Tue, 14 Jan 2025) |
EndedAt: 2025-01-14 00:29:41 -0000 (Tue, 14 Jan 2025) |
EllapsedTime: 78.0 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data MineICA ### ############################################################################## ############################################################################## * checking for file ‘MineICA/DESCRIPTION’ ... OK * preparing ‘MineICA’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘MineICA.Rnw’ using Sweave Loading required package: BiocGenerics Loading required package: generics Attaching package: ‘generics’ The following objects are masked from ‘package:base’: as.difftime, as.factor, as.ordered, intersect, is.element, setdiff, setequal, union Attaching package: ‘BiocGenerics’ The following objects are masked from ‘package:stats’: IQR, mad, sd, var, xtabs The following objects are masked from ‘package:base’: Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append, as.data.frame, basename, cbind, colnames, dirname, do.call, duplicated, eval, evalq, get, grep, grepl, is.unsorted, lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply, saveRDS, table, tapply, unique, unsplit, which.max, which.min Welcome to Bioconductor Vignettes contain introductory material; view with 'browseVignettes()'. To cite Bioconductor, see 'citation("Biobase")', and for packages 'citation("pkgname")'. Warning: program compiled against libxml 212 using older 211 Loading required package: Category Loading required package: stats4 Loading required package: AnnotationDbi Loading required package: IRanges Loading required package: S4Vectors Attaching package: ‘S4Vectors’ The following object is masked from ‘package:plyr’: rename The following object is masked from ‘package:utils’: findMatches The following objects are masked from ‘package:base’: I, expand.grid, unname Attaching package: ‘IRanges’ The following object is masked from ‘package:plyr’: desc Loading required package: Matrix Attaching package: ‘Matrix’ The following object is masked from ‘package:S4Vectors’: expand Loading required package: graph Attaching package: ‘graph’ The following object is masked from ‘package:plyr’: join Attaching package: ‘GOstats’ The following object is masked from ‘package:AnnotationDbi’: makeGOGraph Loading required package: limma Attaching package: ‘limma’ The following object is masked from ‘package:BiocGenerics’: plotMA Package 'mclust' version 6.1.1 Type 'citation("mclust")' for citing this R package in publications. Attaching package: ‘mclust’ The following object is masked from ‘package:limma’: logsumexp Attaching package: ‘igraph’ The following objects are masked from ‘package:graph’: degree, edges, intersection, union The following object is masked from ‘package:IRanges’: union The following object is masked from ‘package:S4Vectors’: union The following objects are masked from ‘package:BiocGenerics’: normalize, path, union The following objects are masked from ‘package:generics’: components, union The following objects are masked from ‘package:stats’: decompose, spectrum The following object is masked from ‘package:base’: union Loading required package: grid Attaching package: ‘Rgraphviz’ The following objects are masked from ‘package:IRanges’: from, to The following objects are masked from ‘package:S4Vectors’: from, to Loading required package: XML Attaching package: ‘XML’ The following object is masked from ‘package:graph’: addNode Attaching package: ‘annotate’ The following object is masked from ‘package:Rgraphviz’: toFile Attaching package: ‘gtools’ The following object is masked from ‘package:igraph’: permute Loading required package: Hmisc Attaching package: ‘Hmisc’ The following object is masked from ‘package:AnnotationDbi’: contents The following objects are masked from ‘package:xtable’: label, label<- The following objects are masked from ‘package:plyr’: is.discrete, summarize The following object is masked from ‘package:Biobase’: contents The following objects are masked from ‘package:base’: format.pval, units Loading required package: fastICA Loading required package: JADE Number of selected genes is 10000 Max IQR is 0.89 Loading required package: org.Hs.eg.db Error: processing vignette 'MineICA.Rnw' failed with diagnostics: chunk 10 (label = mart) Error : Your query has been redirected to http://status.ensembl.org indicating this Ensembl service is currently unavailable. Look at ?useEnsembl for details on how to try a mirror site. --- failed re-building ‘MineICA.Rnw’ SUMMARY: processing the following file failed: ‘MineICA.Rnw’ Error: Vignette re-building failed. Execution halted