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This page was generated on 2025-03-17 11:41 -0400 (Mon, 17 Mar 2025).

HostnameOSArch (*)R versionInstalled pkgs
palomino7Windows Server 2022 Datacenterx64R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences" 4545
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" 4576
kjohnson3macOS 13.7.1 Venturaarm64R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" 4528
kunpeng2Linux (openEuler 24.03 LTS)aarch64R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" 4459
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1172/2313HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MAST 1.33.0  (landing page)
Andrew McDavid
Snapshot Date: 2025-03-16 13:40 -0400 (Sun, 16 Mar 2025)
git_url: https://git.bioconductor.org/packages/MAST
git_branch: devel
git_last_commit: 35654e5
git_last_commit_date: 2024-10-29 10:14:50 -0400 (Tue, 29 Oct 2024)
palomino7Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson3macOS 13.7.1 Ventura / arm64  OK    ERROR  skippedskipped
kunpeng2Linux (openEuler 24.03 LTS) / aarch64  OK    ERROR  skipped


BUILD results for MAST on kunpeng2

To the developers/maintainers of the MAST package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MAST.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: MAST
Version: 1.33.0
Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data MAST
StartedAt: 2025-03-16 23:58:37 -0000 (Sun, 16 Mar 2025)
EndedAt: 2025-03-17 00:04:44 -0000 (Mon, 17 Mar 2025)
EllapsedTime: 367.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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### Running command:
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###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data MAST
###
##############################################################################
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* checking for file ‘MAST/DESCRIPTION’ ... OK
* preparing ‘MAST’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘MAITAnalysis.Rmd’ using rmarkdown
Warning: code chunks must not depend on the uncached chunk "data"
Warning: code chunks must not depend on the uncached chunk "zlm"
Warning: code chunks must not depend on the uncached chunk "boots"
--- finished re-building ‘MAITAnalysis.Rmd’

--- re-building ‘MAST-Intro.Rmd’ using rmarkdown

Quitting from MAST-Intro.Rmd:217-223 [tests]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `melt.default()`:
! The melt generic in data.table has been passed a matrix and will attempt to redirect to the relevant reshape2 method; please note that reshape2 is superseded and is no longer actively developed, and this redirection is now deprecated. To continue using melt methods from reshape2 while both packages are attached, e.g. melt.list, you can prepend the namespace, i.e. reshape2::melt(zlm.lr[, , "Pr(>Chisq)"]). In the next version, this warning will become an error.
---
Backtrace:
    ▆
 1. ├─ggplot2::ggplot(...)
 2. ├─data.table::melt(zlm.lr[, , "Pr(>Chisq)"])
 3. └─data.table:::melt.default(zlm.lr[, , "Pr(>Chisq)"])
 4.   └─data.table:::stopf(...)
 5.     └─data.table:::raise_condition(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'MAST-Intro.Rmd' failed with diagnostics:
The melt generic in data.table has been passed a matrix and will attempt to redirect to the relevant reshape2 method; please note that reshape2 is superseded and is no longer actively developed, and this redirection is now deprecated. To continue using melt methods from reshape2 while both packages are attached, e.g. melt.list, you can prepend the namespace, i.e. reshape2::melt(zlm.lr[, , "Pr(>Chisq)"]). In the next version, this warning will become an error.
--- failed re-building ‘MAST-Intro.Rmd’

--- re-building ‘MAST-interoperability.Rmd’ using rmarkdown
--- finished re-building ‘MAST-interoperability.Rmd’

SUMMARY: processing the following file failed:
  ‘MAST-Intro.Rmd’

Error: Vignette re-building failed.
Execution halted