Back to Multiple platform build/check report for BioC 3.21: simplified long |
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This page was generated on 2025-03-17 11:40 -0400 (Mon, 17 Mar 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences" | 4545 |
lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" | 4576 |
kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" | 4528 |
kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4459 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1151/2313 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Wubing Zhang
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | ||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
To the developers/maintainers of the MAGeCKFlute package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MAGeCKFlute.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: MAGeCKFlute |
Version: 2.11.1 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MAGeCKFlute |
StartedAt: 2025-03-16 16:51:53 -0400 (Sun, 16 Mar 2025) |
EndedAt: 2025-03-16 16:53:01 -0400 (Sun, 16 Mar 2025) |
EllapsedTime: 67.8 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MAGeCKFlute ### ############################################################################## ############################################################################## * checking for file ‘MAGeCKFlute/DESCRIPTION’ ... OK * preparing ‘MAGeCKFlute’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘MAGeCKFlute.Rmd’ using rmarkdown 2025-03-16 16:52:10.020 R[82803:732741949] XType: Using static font registry. Warning: ggrepel: 5 unlabeled data points (too many overlaps). Consider increasing max.overlaps Warning: ggrepel: 8 unlabeled data points (too many overlaps). Consider increasing max.overlaps Warning: ggrepel: 3 unlabeled data points (too many overlaps). Consider increasing max.overlaps Warning: ggrepel: 5 unlabeled data points (too many overlaps). Consider increasing max.overlaps Warning: ggrepel: 9 unlabeled data points (too many overlaps). Consider increasing max.overlaps Warning: ggrepel: 4 unlabeled data points (too many overlaps). Consider increasing max.overlaps --- finished re-building ‘MAGeCKFlute.Rmd’ --- re-building ‘MAGeCKFlute_enrichment.Rmd’ using rmarkdown Quitting from MAGeCKFlute_enrichment.Rmd:103-110 [enrichplot] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `get()`: ! invalid first argument --- Backtrace: ▆ 1. ├─ggtangle::cnetplot(hgtRes1, 5) 2. └─enrichplot:::cnetplot.enrichResult(hgtRes1, 5) 3. ├─ggtangle::cnetplot(...) 4. └─ggtangle:::cnetplot.list(...) 5. ├─ggplot2::ggplot(g, layout = layout) 6. └─ggtangle:::ggplot.igraph(g, layout = layout) 7. └─ggtangle:::get_igraph_layout(layout) 8. └─yulab.utils::get_fun_from_pkg("igraph", layout) 9. └─utils::getFromNamespace(fun, pkg) 10. └─base::get(x, envir = ns, inherits = FALSE) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'MAGeCKFlute_enrichment.Rmd' failed with diagnostics: invalid first argument --- failed re-building ‘MAGeCKFlute_enrichment.Rmd’ SUMMARY: processing the following file failed: ‘MAGeCKFlute_enrichment.Rmd’ Error: Vignette re-building failed. Execution halted