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This page was generated on 2025-03-17 11:40 -0400 (Mon, 17 Mar 2025).

HostnameOSArch (*)R versionInstalled pkgs
palomino7Windows Server 2022 Datacenterx64R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences" 4545
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" 4576
kjohnson3macOS 13.7.1 Venturaarm64R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" 4528
kunpeng2Linux (openEuler 24.03 LTS)aarch64R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" 4459
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1151/2313HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MAGeCKFlute 2.11.1  (landing page)
Wubing Zhang
Snapshot Date: 2025-03-16 13:40 -0400 (Sun, 16 Mar 2025)
git_url: https://git.bioconductor.org/packages/MAGeCKFlute
git_branch: devel
git_last_commit: 29ad26b
git_last_commit_date: 2024-12-17 10:54:40 -0400 (Tue, 17 Dec 2024)
palomino7Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson3macOS 13.7.1 Ventura / arm64  OK    ERROR  skippedskipped
kunpeng2Linux (openEuler 24.03 LTS) / aarch64  OK    ERROR  skipped

BUILD results for MAGeCKFlute on kjohnson3

To the developers/maintainers of the MAGeCKFlute package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MAGeCKFlute.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: MAGeCKFlute
Version: 2.11.1
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MAGeCKFlute
StartedAt: 2025-03-16 16:51:53 -0400 (Sun, 16 Mar 2025)
EndedAt: 2025-03-16 16:53:01 -0400 (Sun, 16 Mar 2025)
EllapsedTime: 67.8 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MAGeCKFlute
###
##############################################################################
##############################################################################


* checking for file ‘MAGeCKFlute/DESCRIPTION’ ... OK
* preparing ‘MAGeCKFlute’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘MAGeCKFlute.Rmd’ using rmarkdown
2025-03-16 16:52:10.020 R[82803:732741949] XType: Using static font registry.
Warning: ggrepel: 5 unlabeled data points (too many overlaps). Consider increasing max.overlaps
Warning: ggrepel: 8 unlabeled data points (too many overlaps). Consider increasing max.overlaps
Warning: ggrepel: 3 unlabeled data points (too many overlaps). Consider increasing max.overlaps
Warning: ggrepel: 5 unlabeled data points (too many overlaps). Consider increasing max.overlaps
Warning: ggrepel: 9 unlabeled data points (too many overlaps). Consider increasing max.overlaps
Warning: ggrepel: 4 unlabeled data points (too many overlaps). Consider increasing max.overlaps
--- finished re-building ‘MAGeCKFlute.Rmd’

--- re-building ‘MAGeCKFlute_enrichment.Rmd’ using rmarkdown

Quitting from MAGeCKFlute_enrichment.Rmd:103-110 [enrichplot]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `get()`:
! invalid first argument
---
Backtrace:
     ▆
  1. ├─ggtangle::cnetplot(hgtRes1, 5)
  2. └─enrichplot:::cnetplot.enrichResult(hgtRes1, 5)
  3.   ├─ggtangle::cnetplot(...)
  4.   └─ggtangle:::cnetplot.list(...)
  5.     ├─ggplot2::ggplot(g, layout = layout)
  6.     └─ggtangle:::ggplot.igraph(g, layout = layout)
  7.       └─ggtangle:::get_igraph_layout(layout)
  8.         └─yulab.utils::get_fun_from_pkg("igraph", layout)
  9.           └─utils::getFromNamespace(fun, pkg)
 10.             └─base::get(x, envir = ns, inherits = FALSE)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'MAGeCKFlute_enrichment.Rmd' failed with diagnostics:
invalid first argument
--- failed re-building ‘MAGeCKFlute_enrichment.Rmd’

SUMMARY: processing the following file failed:
  ‘MAGeCKFlute_enrichment.Rmd’

Error: Vignette re-building failed.
Execution halted