| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-03-21 11:45 -0400 (Fri, 21 Mar 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-03-13 r87965) -- "Unsuffered Consequences" | 4777 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences" | 4545 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" | 4576 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" | 4528 |
| kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4458 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 968/2313 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HiCool 1.7.1 (landing page) Jacques Serizay
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | ... NOT SUPPORTED ... | ||||||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the HiCool package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HiCool.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: HiCool |
| Version: 1.7.1 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data HiCool |
| StartedAt: 2025-03-20 16:41:16 -0400 (Thu, 20 Mar 2025) |
| EndedAt: 2025-03-20 16:41:57 -0400 (Thu, 20 Mar 2025) |
| EllapsedTime: 41.4 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data HiCool
###
##############################################################################
##############################################################################
* checking for file ‘HiCool/DESCRIPTION’ ... OK
* preparing ‘HiCool’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘HiCool.Rmd’ using rmarkdown
python-build: use openssl from homebrew
python-build: use readline from homebrew
Downloading Python-3.7.12.tar.xz...
-> https://www.python.org/ftp/python/3.7.12/Python-3.7.12.tar.xz
cat: /Users/biocbuild/Library/Application: No such file or directory
cat: Support/r-reticulate/pyenv/plugins/python-build/bin/../share/python-build/patches/3.7.12/Python-3.7.12/0001-Port-ctypes-and-system-libffi-patches-for-arm64-macO.patch: No such file or directory
cat: /Users/biocbuild/Library/Application: No such file or directory
cat: Support/r-reticulate/pyenv/plugins/python-build/bin/../share/python-build/patches/3.7.12/Python-3.7.12/0002-bpo-41100-fix-_decimal-for-arm64-Mac-OS-GH-21228.patch: No such file or directory
cat: /Users/biocbuild/Library/Application: No such file or directory
cat: Support/r-reticulate/pyenv/plugins/python-build/bin/../share/python-build/patches/3.7.12/Python-3.7.12/0003-bpo-42351-Avoid-error-when-opening-header-with-non-U.patch: No such file or directory
cat: /Users/biocbuild/Library/Application: No such file or directory
cat: Support/r-reticulate/pyenv/plugins/python-build/bin/../share/python-build/patches/3.7.12/Python-3.7.12/0004-bpo-45405-Prevent-internal-configure-error-when-runn.patch: No such file or directory
BUILD FAILED (OS X 13.7.1 using python-build 20180424)
Inspect or clean up the working tree at /var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/python-build.20250320164154.4612
Results logged to /var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/python-build.20250320164154.4612.log
Last 10 log lines:
/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/python-build.20250320164154.4612 /private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpP60Zq0/Rbuild79b656110f1/HiCool/vignettes
/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/python-build.20250320164154.4612/Python-3.7.12 /var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/python-build.20250320164154.4612 /private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpP60Zq0/Rbuild79b656110f1/HiCool/vignettes
Quitting from HiCool.Rmd:70-80 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! installation of Python 3.7.12 failed
---
Backtrace:
▆
1. └─HiCool::HiCool(...)
2. └─basilisk::basiliskStart(env_HiCool)
3. └─basilisk::obtainEnvironmentPath(env)
4. └─basilisk::setupBasiliskEnv(...)
5. ├─base::suppressMessages(install_python(version))
6. │ └─base::withCallingHandlers(...)
7. └─reticulate::install_python(version)
8. └─reticulate:::stopf("installation of Python %s failed", version)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'HiCool.Rmd' failed with diagnostics:
installation of Python 3.7.12 failed
--- failed re-building ‘HiCool.Rmd’
SUMMARY: processing the following file failed:
‘HiCool.Rmd’
Error: Vignette re-building failed.
Execution halted