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This page was generated on 2025-03-17 11:41 -0400 (Mon, 17 Mar 2025).

HostnameOSArch (*)R versionInstalled pkgs
palomino7Windows Server 2022 Datacenterx64R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences" 4545
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" 4576
kjohnson3macOS 13.7.1 Venturaarm64R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" 4528
kunpeng2Linux (openEuler 24.03 LTS)aarch64R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" 4459
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 967/2313HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
HiContacts 1.9.0  (landing page)
Jacques Serizay
Snapshot Date: 2025-03-16 13:40 -0400 (Sun, 16 Mar 2025)
git_url: https://git.bioconductor.org/packages/HiContacts
git_branch: devel
git_last_commit: 8328e67
git_last_commit_date: 2024-10-29 11:14:31 -0400 (Tue, 29 Oct 2024)
palomino7Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.1 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 24.03 LTS) / aarch64  OK    ERROR  skipped


BUILD results for HiContacts on kunpeng2

To the developers/maintainers of the HiContacts package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HiContacts.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: HiContacts
Version: 1.9.0
Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data HiContacts
StartedAt: 2025-03-16 23:32:08 -0000 (Sun, 16 Mar 2025)
EndedAt: 2025-03-16 23:38:34 -0000 (Sun, 16 Mar 2025)
EllapsedTime: 385.5 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data HiContacts
###
##############################################################################
##############################################################################


* checking for file ‘HiContacts/DESCRIPTION’ ... OK
* preparing ‘HiContacts’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘HiContacts.Rmd’ using rmarkdown
Warning in for (i in seq_len(n)) { :
  closing unused connection 4 (/home/biocbuild/.cache/R/ExperimentHub/1751a96897fa50_7751)

Quitting from HiContacts.Rmd:169-177 [unnamed-chunk-12]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'terra'
---
Backtrace:
    ▆
 1. ├─HiContacts::despeckle(hic_1)
 2. └─base::loadNamespace(x)
 3.   └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
 4.     └─base (local) withOneRestart(expr, restarts[[1L]])
 5.       └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'HiContacts.Rmd' failed with diagnostics:
there is no package called 'terra'
--- failed re-building ‘HiContacts.Rmd’

SUMMARY: processing the following file failed:
  ‘HiContacts.Rmd’

Error: Vignette re-building failed.
Execution halted