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This page was generated on 2025-03-14 11:40 -0400 (Fri, 14 Mar 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" 4781
palomino7Windows Server 2022 Datacenterx64R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences" 4537
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" 4567
kjohnson3macOS 13.7.1 Venturaarm64R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" 4519
kunpeng2Linux (openEuler 24.03 LTS)aarch64R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" 4451
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 943/2309HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Harshlight 1.79.0  (landing page)
Maurizio Pellegrino
Snapshot Date: 2025-03-13 13:40 -0400 (Thu, 13 Mar 2025)
git_url: https://git.bioconductor.org/packages/Harshlight
git_branch: devel
git_last_commit: ed62604
git_last_commit_date: 2024-10-29 09:26:34 -0400 (Tue, 29 Oct 2024)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  ERROR    ERROR  skipped
palomino7Windows Server 2022 Datacenter / x64  ERROR    ERROR  skippedskipped
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.1 Ventura / arm64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 24.03 LTS) / aarch64  ERROR    ERROR  skipped

BUILD results for Harshlight on nebbiolo1

To the developers/maintainers of the Harshlight package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Harshlight.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: Harshlight
Version: 1.79.0
Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data Harshlight
StartedAt: 2025-03-13 17:28:41 -0400 (Thu, 13 Mar 2025)
EndedAt: 2025-03-13 17:28:42 -0400 (Thu, 13 Mar 2025)
EllapsedTime: 1.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data Harshlight
###
##############################################################################
##############################################################################


* checking for file ‘Harshlight/DESCRIPTION’ ... OK
* preparing ‘Harshlight’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘Harshlight’ ...
** this is package ‘Harshlight’ version ‘1.79.0’
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
gcc -std=gnu2x -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -c Harshlight.c -o Harshlight.o
Harshlight.c: In function ‘report_overall_header’:
Harshlight.c:1471:26: warning: unknown conversion type character ‘)’ in format [-Wformat=]
 1471 |   PP "%d %d moveto (%.2f%) show\n", x_text_val, y_text - 215, *diff_br);
      |                          ^
Harshlight.c:1474:26: warning: unknown conversion type character ‘)’ in format [-Wformat=]
 1474 |   PP "%d %d moveto (%.2f%) show\n", x_text_val, y_text - 230, *diff_dr);
      |                          ^
Harshlight.c: At top level:
Harshlight.c:1504:6: error: conflicting types for ‘chip_overall_header’; have ‘void(int *, char **)’
 1504 | void chip_overall_header(int *chip_number, char **chip_name){
      |      ^~~~~~~~~~~~~~~~~~~
Harshlight.c:93:6: note: previous declaration of ‘chip_overall_header’ with type ‘void(void)’
   93 | void chip_overall_header(); //general header for a chip
      |      ^~~~~~~~~~~~~~~~~~~
Harshlight.c: In function ‘chip_summary’:
Harshlight.c:1532:107: warning: unknown conversion type character ‘)’ in format [-Wformat=]
 1532 |   PP "%d %d moveto (Extended defects: the variance of the Error Image explained by the background is %.2f%) show\n", x_text, y_text - 30, *var);
      |                                                                                                           ^
Harshlight.c:1542:26: warning: unknown conversion type character ‘)’ in format [-Wformat=]
 1542 |   PP "%d %d moveto (%.2f%) show\n", x_val_1, y_text - 100, *perc_c);
      |                          ^
Harshlight.c:1543:26: warning: unknown conversion type character ‘)’ in format [-Wformat=]
 1543 |   PP "%d %d moveto (%.2f%) show\n", x_val_2, y_text - 100, *perc_d);
      |                          ^
Harshlight.c: In function ‘extended_stop’:
Harshlight.c:1555:107: warning: unknown conversion type character ‘)’ in format [-Wformat=]
 1555 |   PP "%d %d moveto (Extended defects: the variance of the Error Image explained by the background is %.2f%) show\n", x_text, y_text - 30, *var);
      |                                                                                                           ^
make: *** [/home/biocbuild/bbs-3.21-bioc/R/etc/Makeconf:201: Harshlight.o] Error 1
ERROR: compilation failed for package ‘Harshlight’
* removing ‘/tmp/RtmpXOxOGJ/Rinst8c3954ef579c3/Harshlight’
      -----------------------------------
ERROR: package installation failed