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This page was generated on 2025-03-17 11:41 -0400 (Mon, 17 Mar 2025).

HostnameOSArch (*)R versionInstalled pkgs
palomino7Windows Server 2022 Datacenterx64R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences" 4545
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" 4576
kjohnson3macOS 13.7.1 Venturaarm64R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" 4528
kunpeng2Linux (openEuler 24.03 LTS)aarch64R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" 4459
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 437/2313HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CopyNumberPlots 1.23.0  (landing page)
Bernat Gel
Snapshot Date: 2025-03-16 13:40 -0400 (Sun, 16 Mar 2025)
git_url: https://git.bioconductor.org/packages/CopyNumberPlots
git_branch: devel
git_last_commit: f101583
git_last_commit_date: 2024-10-29 10:36:48 -0400 (Tue, 29 Oct 2024)
palomino7Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson3macOS 13.7.1 Ventura / arm64  OK    ERROR  skippedskipped
kunpeng2Linux (openEuler 24.03 LTS) / aarch64  OK    ERROR  skipped


BUILD results for CopyNumberPlots on kunpeng2

To the developers/maintainers of the CopyNumberPlots package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CopyNumberPlots.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: CopyNumberPlots
Version: 1.23.0
Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data CopyNumberPlots
StartedAt: 2025-03-16 21:59:07 -0000 (Sun, 16 Mar 2025)
EndedAt: 2025-03-16 22:00:50 -0000 (Sun, 16 Mar 2025)
EllapsedTime: 103.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data CopyNumberPlots
###
##############################################################################
##############################################################################


* checking for file ‘CopyNumberPlots/DESCRIPTION’ ... OK
* preparing ‘CopyNumberPlots’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘CopyNumberPlots.Rmd’ using rmarkdown

Quitting from CopyNumberPlots.Rmd:406-410 [unnamed-chunk-18]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `options()`:
! invalid 'scipen'
---
Backtrace:
    ▆
 1. └─karyoploteR::kpAddBaseNumbers(kp)
 2.   └─base::options(scipen = old.scipen)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'CopyNumberPlots.Rmd' failed with diagnostics:
invalid 'scipen'
--- failed re-building ‘CopyNumberPlots.Rmd’

SUMMARY: processing the following file failed:
  ‘CopyNumberPlots.Rmd’

Error: Vignette re-building failed.
Execution halted