Back to Multiple platform build/check report for BioC 3.21: simplified long |
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This page was generated on 2025-03-17 11:41 -0400 (Mon, 17 Mar 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences" | 4545 |
lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" | 4576 |
kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" | 4528 |
kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4459 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 443/2313 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
CoSIA 1.7.0 (landing page) Amanda D. Clark
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ![]() | |||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | ![]() | ||||||||
kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
To the developers/maintainers of the CoSIA package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CoSIA.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
Package: CoSIA |
Version: 1.7.0 |
Command: /home/biocbuild/R/R/bin/R CMD check --install=check:CoSIA.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings CoSIA_1.7.0.tar.gz |
StartedAt: 2025-03-17 05:12:08 -0000 (Mon, 17 Mar 2025) |
EndedAt: 2025-03-17 05:39:23 -0000 (Mon, 17 Mar 2025) |
EllapsedTime: 1635.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: CoSIA.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD check --install=check:CoSIA.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings CoSIA_1.7.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.21-bioc/meat/CoSIA.Rcheck’ * using R Under development (unstable) (2025-02-19 r87757) * using platform: aarch64-unknown-linux-gnu * R was compiled by aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0 GNU Fortran (GCC) 14.2.0 * running under: openEuler 24.03 (LTS-SP1) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘CoSIA/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘CoSIA’ version ‘1.7.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘CoSIA’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE License stub is invalid DCF. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed plotCVGEx-CoSIAn-method 362.847 28.542 401.349 plotCVGEx 298.490 18.085 323.875 getTissues 117.547 3.111 123.701 plotSpeciesGEx 96.190 3.534 102.554 plotSpeciesGEx-CoSIAn-method 92.434 5.778 101.187 plotDSGEx 82.281 3.902 89.606 plotTissueGEx 78.370 1.788 83.695 plotDSGEx-CoSIAn-method 76.511 2.733 82.222 plotTissueGEx-CoSIAn-method 77.162 1.969 82.157 getGEx-CoSIAn-method 23.303 0.786 27.814 getGExMetrics-CoSIAn-method 21.160 0.698 24.610 getGExMetrics 19.549 0.396 22.695 getGEx 18.673 0.798 22.250 getConversion-CoSIAn-method 5.592 0.279 5.913 * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.21-bioc/meat/CoSIA.Rcheck/00check.log’ for details.
CoSIA.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL CoSIA ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-devel_2025-02-19/site-library’ * installing *source* package ‘CoSIA’ ... ** this is package ‘CoSIA’ version ‘1.7.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CoSIA)
CoSIA.Rcheck/CoSIA-Ex.timings
name | user | system | elapsed | |
CoSIA-constructor | 0.005 | 0.008 | 0.013 | |
getConversion-CoSIAn-method | 5.592 | 0.279 | 5.913 | |
getConversion | 2.858 | 0.060 | 2.924 | |
getGEx-CoSIAn-method | 23.303 | 0.786 | 27.814 | |
getGEx | 18.673 | 0.798 | 22.250 | |
getGExMetrics-CoSIAn-method | 21.160 | 0.698 | 24.610 | |
getGExMetrics | 19.549 | 0.396 | 22.695 | |
getTissues | 117.547 | 3.111 | 123.701 | |
plotCVGEx-CoSIAn-method | 362.847 | 28.542 | 401.349 | |
plotCVGEx | 298.490 | 18.085 | 323.875 | |
plotDSGEx-CoSIAn-method | 76.511 | 2.733 | 82.222 | |
plotDSGEx | 82.281 | 3.902 | 89.606 | |
plotSpeciesGEx-CoSIAn-method | 92.434 | 5.778 | 101.187 | |
plotSpeciesGEx | 96.190 | 3.534 | 102.554 | |
plotTissueGEx-CoSIAn-method | 77.162 | 1.969 | 82.157 | |
plotTissueGEx | 78.370 | 1.788 | 83.695 | |
viewCoSIAn-CoSIAn-method | 0.002 | 0.000 | 0.002 | |
viewCoSIAn | 0.002 | 0.000 | 0.002 | |