Back to Multiple platform build/check report for BioC 3.21:   simplified   long
AB[C]DEFGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2025-01-14 11:40 -0500 (Tue, 14 Jan 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" 4767
palomino7Windows Server 2022 Datacenterx64R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" 4487
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" 4450
kjohnson3macOS 13.7.1 Venturaarm64R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" 4405
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch64R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" 4398
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 332/2281HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ChIPpeakAnno 3.41.1  (landing page)
Jianhong Ou
Snapshot Date: 2025-01-13 13:40 -0500 (Mon, 13 Jan 2025)
git_url: https://git.bioconductor.org/packages/ChIPpeakAnno
git_branch: devel
git_last_commit: cfbf335
git_last_commit_date: 2025-01-03 09:42:19 -0500 (Fri, 03 Jan 2025)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped
palomino7Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson3macOS 13.7.1 Ventura / arm64  OK    ERROR  skippedskipped
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    ERROR  skipped

BUILD results for ChIPpeakAnno on nebbiolo1

To the developers/maintainers of the ChIPpeakAnno package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ChIPpeakAnno.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: ChIPpeakAnno
Version: 3.41.1
Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data ChIPpeakAnno
StartedAt: 2025-01-13 16:32:48 -0500 (Mon, 13 Jan 2025)
EndedAt: 2025-01-13 16:36:36 -0500 (Mon, 13 Jan 2025)
EllapsedTime: 228.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data ChIPpeakAnno
###
##############################################################################
##############################################################################


* checking for file ‘ChIPpeakAnno/DESCRIPTION’ ... OK
* preparing ‘ChIPpeakAnno’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘ChIPpeakAnno.Rmd’ using rmarkdown

Quitting from lines 117-127 [unnamed-chunk-5] (ChIPpeakAnno.Rmd)
Error: processing vignette 'ChIPpeakAnno.Rmd' failed with diagnostics:
The given dataset:  hsapiens_gene_ensembl , is not valid.  Correct dataset names can be obtained with the listDatasets() function.
--- failed re-building ‘ChIPpeakAnno.Rmd’

SUMMARY: processing the following file failed:
  ‘ChIPpeakAnno.Rmd’

Error: Vignette re-building failed.
Execution halted