Back to Multiple platform build/check report for BioC 3.21: simplified long |
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This page was generated on 2025-03-19 11:40 -0400 (Wed, 19 Mar 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-03-13 r87965) -- "Unsuffered Consequences" | 4742 |
palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences" | 4545 |
lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" | 4576 |
kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" | 4528 |
kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4459 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 296/2313 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
CellBarcode 1.13.2 (landing page) Wenjie Sun
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
palomino7 | Windows Server 2022 Datacenter / x64 | ERROR | ERROR | skipped | skipped | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | ![]() | ||||||||
kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
To the developers/maintainers of the CellBarcode package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CellBarcode.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: CellBarcode |
Version: 1.13.2 |
Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL CellBarcode |
StartedAt: 2025-03-18 15:51:44 -0400 (Tue, 18 Mar 2025) |
EndedAt: 2025-03-18 15:53:15 -0400 (Tue, 18 Mar 2025) |
EllapsedTime: 91.8 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL CellBarcode ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’ * installing *source* package ‘CellBarcode’ ... ** this is package ‘CellBarcode’ version ‘1.13.2’ ** using staged installation ** libs using C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’ rm -Rf CellBarcode.so ./rust/target/release/libCellBarcode.a entrypoint.o gcc -std=gnu2x -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c entrypoint.c -o entrypoint.o # In some environments, ~/.cargo/bin might not be included in PATH, so we need # to set it here to ensure cargo can be invoked. It is appended to PATH and # therefore is only used if cargo is absent from the user's PATH. if [ "" != "true" ]; then \ export CARGO_HOME=/home/biocbuild/bbs-3.21-bioc/meat/CellBarcode/src/.cargo; \ fi && \ export PATH="/home/biocbuild/.virtualenvs/r-reticulate/bin:/usr/local/bin:/usr/bin:/bin:/snap/bin:/home/biocbuild/.dotnet/tools:/home/biocbuild/.cargo/bin" && \ cargo build --lib --release --manifest-path=./rust/Cargo.toml --target-dir ./rust/target Updating crates.io index Downloading crates ... Downloaded extendr-macros v0.7.1 Downloaded adler2 v2.0.0 Downloaded leven-distance v1.0.0 Downloaded lazy_static v1.5.0 Downloaded cfg-if v1.0.0 Downloaded paste v1.0.15 Downloaded either v1.14.0 Downloaded crc32fast v1.4.2 Downloaded quote v1.0.38 Downloaded proc-macro2 v1.0.93 Downloaded itertools v0.10.5 Downloaded unicode-ident v1.0.17 Downloaded miniz_oxide v0.8.5 Downloaded once_cell v1.20.3 Downloaded memchr v2.7.4 Downloaded flate2 v1.1.0 Downloaded extendr-api v0.7.1 Downloaded aho-corasick v1.1.3 Downloaded regex v1.11.1 Downloaded syn v2.0.98 Downloaded regex-syntax v0.8.5 Downloaded regex-automata v0.4.9 Downloaded libR-sys v0.7.1 Compiling proc-macro2 v1.0.93 Compiling unicode-ident v1.0.17 Compiling libR-sys v0.7.1 Compiling paste v1.0.15 Compiling memchr v2.7.4 Compiling adler2 v2.0.0 Compiling cfg-if v1.0.0 Compiling regex-syntax v0.8.5 Compiling extendr-api v0.7.1 Compiling once_cell v1.20.3 Compiling either v1.14.0 Compiling lazy_static v1.5.0 Compiling leven-distance v1.0.0 Compiling crc32fast v1.4.2 Compiling miniz_oxide v0.8.5 Compiling itertools v0.10.5 Compiling aho-corasick v1.1.3 Compiling flate2 v1.1.0 Compiling quote v1.0.38 Compiling syn v2.0.98 Compiling regex-automata v0.4.9 Compiling regex v1.11.1 Compiling extendr-macros v0.7.1 Compiling CellBarcode v0.1.0 (/home/biocbuild/bbs-3.21-bioc/meat/CellBarcode/src/rust) warning: crate `CellBarcode` should have a snake case name | = help: convert the identifier to snake case: `cell_barcode` = note: `#[warn(non_snake_case)]` on by default warning: `CellBarcode` (lib) generated 1 warning Finished release [optimized] target(s) in 55.30s if [ "" != "true" ]; then \ rm -Rf /home/biocbuild/bbs-3.21-bioc/meat/CellBarcode/src/.cargo && \ rm -Rf ./rust/target/release/build; \ fi gcc -std=gnu2x -shared -L/home/biocbuild/bbs-3.21-bioc/R/lib -L/usr/local/lib -o CellBarcode.so entrypoint.o -L./rust/target/release -lCellBarcode -L/home/biocbuild/bbs-3.21-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.21-bioc/R/site-library/00LOCK-CellBarcode/00new/CellBarcode/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CellBarcode)