Back to Multiple platform build/check report for BioC 3.21:   simplified   long
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This page was generated on 2025-03-19 11:40 -0400 (Wed, 19 Mar 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2025-03-13 r87965) -- "Unsuffered Consequences" 4742
palomino7Windows Server 2022 Datacenterx64R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences" 4545
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" 4576
kjohnson3macOS 13.7.1 Venturaarm64R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" 4528
kunpeng2Linux (openEuler 24.03 LTS)aarch64R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" 4459
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 296/2313HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CellBarcode 1.13.2  (landing page)
Wenjie Sun
Snapshot Date: 2025-03-18 13:40 -0400 (Tue, 18 Mar 2025)
git_url: https://git.bioconductor.org/packages/CellBarcode
git_branch: devel
git_last_commit: 9c54c56
git_last_commit_date: 2025-03-04 15:05:23 -0400 (Tue, 04 Mar 2025)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  ERROR    ERROR  skippedskipped
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.1 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 24.03 LTS) / aarch64  OK    OK    OK  


INSTALL results for CellBarcode on nebbiolo1

To the developers/maintainers of the CellBarcode package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CellBarcode.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: CellBarcode
Version: 1.13.2
Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL CellBarcode
StartedAt: 2025-03-18 15:51:44 -0400 (Tue, 18 Mar 2025)
EndedAt: 2025-03-18 15:53:15 -0400 (Tue, 18 Mar 2025)
EllapsedTime: 91.8 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL CellBarcode
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’
* installing *source* package ‘CellBarcode’ ...
** this is package ‘CellBarcode’ version ‘1.13.2’
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
rm -Rf CellBarcode.so ./rust/target/release/libCellBarcode.a entrypoint.o
gcc -std=gnu2x -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/BH/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security -c entrypoint.c -o entrypoint.o
# In some environments, ~/.cargo/bin might not be included in PATH, so we need
# to set it here to ensure cargo can be invoked. It is appended to PATH and
# therefore is only used if cargo is absent from the user's PATH.
if [ "" != "true" ]; then \
	export CARGO_HOME=/home/biocbuild/bbs-3.21-bioc/meat/CellBarcode/src/.cargo; \
fi && \
	export PATH="/home/biocbuild/.virtualenvs/r-reticulate/bin:/usr/local/bin:/usr/bin:/bin:/snap/bin:/home/biocbuild/.dotnet/tools:/home/biocbuild/.cargo/bin" && \
	cargo build --lib --release --manifest-path=./rust/Cargo.toml --target-dir ./rust/target
    Updating crates.io index
 Downloading crates ...
  Downloaded extendr-macros v0.7.1
  Downloaded adler2 v2.0.0
  Downloaded leven-distance v1.0.0
  Downloaded lazy_static v1.5.0
  Downloaded cfg-if v1.0.0
  Downloaded paste v1.0.15
  Downloaded either v1.14.0
  Downloaded crc32fast v1.4.2
  Downloaded quote v1.0.38
  Downloaded proc-macro2 v1.0.93
  Downloaded itertools v0.10.5
  Downloaded unicode-ident v1.0.17
  Downloaded miniz_oxide v0.8.5
  Downloaded once_cell v1.20.3
  Downloaded memchr v2.7.4
  Downloaded flate2 v1.1.0
  Downloaded extendr-api v0.7.1
  Downloaded aho-corasick v1.1.3
  Downloaded regex v1.11.1
  Downloaded syn v2.0.98
  Downloaded regex-syntax v0.8.5
  Downloaded regex-automata v0.4.9
  Downloaded libR-sys v0.7.1
   Compiling proc-macro2 v1.0.93
   Compiling unicode-ident v1.0.17
   Compiling libR-sys v0.7.1
   Compiling paste v1.0.15
   Compiling memchr v2.7.4
   Compiling adler2 v2.0.0
   Compiling cfg-if v1.0.0
   Compiling regex-syntax v0.8.5
   Compiling extendr-api v0.7.1
   Compiling once_cell v1.20.3
   Compiling either v1.14.0
   Compiling lazy_static v1.5.0
   Compiling leven-distance v1.0.0
   Compiling crc32fast v1.4.2
   Compiling miniz_oxide v0.8.5
   Compiling itertools v0.10.5
   Compiling aho-corasick v1.1.3
   Compiling flate2 v1.1.0
   Compiling quote v1.0.38
   Compiling syn v2.0.98
   Compiling regex-automata v0.4.9
   Compiling regex v1.11.1
   Compiling extendr-macros v0.7.1
   Compiling CellBarcode v0.1.0 (/home/biocbuild/bbs-3.21-bioc/meat/CellBarcode/src/rust)
warning: crate `CellBarcode` should have a snake case name
  |
  = help: convert the identifier to snake case: `cell_barcode`
  = note: `#[warn(non_snake_case)]` on by default

warning: `CellBarcode` (lib) generated 1 warning
    Finished release [optimized] target(s) in 55.30s
if [ "" != "true" ]; then \
	rm -Rf /home/biocbuild/bbs-3.21-bioc/meat/CellBarcode/src/.cargo && \
	rm -Rf ./rust/target/release/build; \
fi
gcc -std=gnu2x -shared -L/home/biocbuild/bbs-3.21-bioc/R/lib -L/usr/local/lib -o CellBarcode.so entrypoint.o -L./rust/target/release -lCellBarcode -L/home/biocbuild/bbs-3.21-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.21-bioc/R/site-library/00LOCK-CellBarcode/00new/CellBarcode/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (CellBarcode)