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### Running command:
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###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:RcisTarget.hg19.motifDBs.cisbpOnly.500bp.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings RcisTarget.hg19.motifDBs.cisbpOnly.500bp_1.26.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.20-data-experiment/meat/RcisTarget.hg19.motifDBs.cisbpOnly.500bp.Rcheck’
* using R version 4.4.2 (2024-10-31)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
* running under: Ubuntu 24.04.1 LTS
* using session charset: UTF-8
* checking for file ‘RcisTarget.hg19.motifDBs.cisbpOnly.500bp/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RcisTarget.hg19.motifDBs.cisbpOnly.500bp’ version ‘1.26.0’
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
  cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
 OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RcisTarget.hg19.motifDBs.cisbpOnly.500bp’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 53.6Mb
  sub-directories of 1Mb or more:
    data  53.5Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... NOTE
checkRd: (-1) RcisTarget.hg19.motifDBs.Rd:69: Lost braces in \itemize; meant \describe ?
checkRd: (-1) RcisTarget.hg19.motifDBs.Rd:70: Lost braces in \itemize; meant \describe ?
checkRd: (-1) RcisTarget.hg19.motifDBs.Rd:72-75: Lost braces in \itemize; meant \describe ?
checkRd: (-1) RcisTarget.hg19.motifDBs.Rd:76: Lost braces in \itemize; meant \describe ?
checkRd: (-1) RcisTarget.hg19.motifDBs.Rd:77-80: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... WARNING
  Error loading dataset 'hg19_500bpUpstream_motifRanking_cispbOnly':
   Error in .requirePackage(package) : 
    unable to find required package 'RcisTarget'
  
  The dataset(s) may use package(s) not declared in Depends/Imports.
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... NONE
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.20-data-experiment/meat/RcisTarget.hg19.motifDBs.cisbpOnly.500bp.Rcheck/00check.log’
for details.

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### Running command:
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###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL RcisTarget.hg19.motifDBs.cisbpOnly.500bp
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* installing to library ‘/home/biocbuild/bbs-3.20-bioc/R/site-library’
* installing *source* package ‘RcisTarget.hg19.motifDBs.cisbpOnly.500bp’ ...
** using staged installation
** data
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RcisTarget.hg19.motifDBs.cisbpOnly.500bp)