BioC 3.2: CHECK report for piano on linux1.bioconductor.org
This page was generated on 2015-10-27 17:25:53 -0400 (Tue, 27 Oct 2015).
piano 1.10.0 Leif Varemo
Snapshot Date: 2015-10-26 19:24:07 -0400 (Mon, 26 Oct 2015) | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/piano | Last Changed Rev: 109589 / Revision: 109947 | Last Changed Date: 2015-10-13 15:36:05 -0400 (Tue, 13 Oct 2015) |
| linux1.bioconductor.org | Linux (Ubuntu 14.04.2 LTS) / x86_64 | OK | OK | [ WARNINGS ] | |  |
windows1.bioconductor.org | Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | WARNINGS | OK |  |
perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | WARNINGS | OK |  |
oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | WARNINGS | OK |  |
Summary
Package: piano |
Version: 1.10.0 |
Command: /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD check --no-vignettes --timings piano_1.10.0.tar.gz |
StartedAt: 2015-10-27 06:41:59 -0400 (Tue, 27 Oct 2015) |
EndedAt: 2015-10-27 06:43:11 -0400 (Tue, 27 Oct 2015) |
EllapsedTime: 71.3 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: piano.Rcheck |
Warnings: 1 |
Command output
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### Running command:
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### /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD check --no-vignettes --timings piano_1.10.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.2-bioc/meat/piano.Rcheck’
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘piano/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘piano’ version ‘1.10.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘piano’ can be installed ... [3s/3s] WARNING
Found the following significant warnings:
Warning: replacing previous import by ‘igraph::union’ when loading ‘piano’
Warning: replacing previous import by ‘igraph::normalize’ when loading ‘piano’
See ‘/home/biocbuild/bbs-3.2-bioc/meat/piano.Rcheck/00install.out’ for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [26s/26s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING
See
‘/home/biocbuild/bbs-3.2-bioc/meat/piano.Rcheck/00check.log’
for details.
piano.Rcheck/00install.out:
* installing *source* package ‘piano’ ...
** R
** data
** inst
** preparing package for lazy loading
Warning: replacing previous import by ‘igraph::union’ when loading ‘piano’
Warning: replacing previous import by ‘igraph::normalize’ when loading ‘piano’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: replacing previous import by ‘igraph::union’ when loading ‘piano’
Warning: replacing previous import by ‘igraph::normalize’ when loading ‘piano’
* DONE (piano)
piano.Rcheck/piano-Ex.timings:
name | user | system | elapsed
|
GSAheatmap | 3.409 | 0.008 | 3.421 |
|
GSAsummaryTable | 3.306 | 0.020 | 3.326 |
|
consensusHeatmap | 0.156 | 0.008 | 0.164 |
|
consensusScores | 0.068 | 0.000 | 0.068 |
|
diffExp | 3.137 | 0.060 | 3.199 |
|
extractFactors | 0.216 | 0.000 | 0.217 |
|
geneSetSummary | 3.371 | 0.007 | 3.379 |
|
loadGSC | 0.012 | 0.001 | 0.012 |
|
loadMAdata | 0.198 | 0.015 | 0.214 |
|
networkPlot | 4.898 | 0.021 | 4.920 |
|
polarPlot | 0.536 | 0.020 | 0.556 |
|
runGSA | 4.074 | 0.000 | 4.076 |
|
runGSAhyper | 0.18 | 0.00 | 0.18 |
|
runQC | 0.910 | 0.011 | 0.923 |
|
writeFilesForKiwi | 0.43 | 0.00 | 0.43 |
|