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BioC 3.2: INSTALL report for openCyto on windows1.bioconductor.org

This page was generated on 2015-10-27 17:30:51 -0400 (Tue, 27 Oct 2015).

Package 731/1104HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
openCyto 1.8.1
Mike Jiang
Snapshot Date: 2015-10-26 19:24:07 -0400 (Mon, 26 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/openCyto
Last Changed Rev: 109947 / Revision: 109947
Last Changed Date: 2015-10-26 18:02:35 -0400 (Mon, 26 Oct 2015)
linux1.bioconductor.org Linux (Ubuntu 14.04.2 LTS) / x86_64  ERROR  ERROR  skipped 
windows1.bioconductor.org Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64 [ ERROR ] ERROR  skipped  skipped 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  ERROR  ERROR  skipped  skipped 
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  ERROR  ERROR  skipped  skipped 

Summary

Package: openCyto
Version: 1.8.1
Command: C:\cygwin64\bin\curl.exe -O http://linux1.bioconductor.org/BBS/3.2/bioc/src/contrib/openCyto_1.8.1.tar.gz && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch openCyto_1.8.1.tar.gz && rm openCyto_1.8.1.tar.gz
StartedAt: 2015-10-26 20:17:28 -0400 (Mon, 26 Oct 2015)
EndedAt: 2015-10-26 20:17:38 -0400 (Mon, 26 Oct 2015)
EllapsedTime: 10.1 seconds
RetCode: 1
Status:  ERROR  

Command output

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###
### Running command:
###
###   C:\cygwin64\bin\curl.exe -O http://linux1.bioconductor.org/BBS/3.2/bioc/src/contrib/openCyto_1.8.1.tar.gz && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch openCyto_1.8.1.tar.gz && rm openCyto_1.8.1.tar.gz
###
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##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  109k  100  109k    0     0  17.7M      0 --:--:-- --:--:-- --:--:-- 53.3M

install for i386

* installing to library 'C:/biocbld/bbs-3.2-bioc/R/library'
* installing *source* package 'openCyto' ...
** libs
g++ -m32 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c RcppExports.cpp -o RcppExports.o
g++ -m32 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c misc.cpp -o misc.o
misc.cpp: In function 'Rcpp::NumericMatrix collapseData(Rcpp::List, Rcpp::StringVector)':
misc.cpp:10:40: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
misc.cpp:21:47: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
gcc -m32 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c unlockNamespace.c -o unlockNamespace.o
g++ -m32 -shared -s -static-libgcc -o openCyto.dll tmp.def RcppExports.o misc.o unlockNamespace.o -Ld:/RCompile/r-compiling/local/local320/lib/i386 -Ld:/RCompile/r-compiling/local/local320/lib -LC:/biocbld/BBS-3˜1.2-B/R/bin/i386 -lR
installing to C:/biocbld/bbs-3.2-bioc/R/library/openCyto/libs/i386
** R
** inst
** preparing package for lazy loading
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : 
  namespace 'flowStats' 3.28.1 is being loaded, but >= 3.29.1 is required
ERROR: lazy loading failed for package 'openCyto'
* removing 'C:/biocbld/bbs-3.2-bioc/R/library/openCyto'
* restoring previous 'C:/biocbld/bbs-3.2-bioc/R/library/openCyto'
Warning: running command 'C:/biocbld/bbs-3.2-bioc/R/bin/i386/Rcmd.exe INSTALL openCyto_1.8.1.tar.gz --no-multiarch' had status 1