BioC 3.2: CHECK report for netbiov on linux1.bioconductor.org
This page was generated on 2015-10-27 17:26:35 -0400 (Tue, 27 Oct 2015).
netbiov 1.4.0 Shailesh tripathi
Snapshot Date: 2015-10-26 19:24:07 -0400 (Mon, 26 Oct 2015) | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/netbiov | Last Changed Rev: 109589 / Revision: 109947 | Last Changed Date: 2015-10-13 15:36:05 -0400 (Tue, 13 Oct 2015) |
| linux1.bioconductor.org | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | [ OK ] | |  |
windows1.bioconductor.org | Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | OK | OK |  |
perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | OK | OK | OK |  |
oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | OK | OK |  |
Summary
Package: netbiov |
Version: 1.4.0 |
Command: /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD check --no-vignettes --timings netbiov_1.4.0.tar.gz |
StartedAt: 2015-10-27 06:14:35 -0400 (Tue, 27 Oct 2015) |
EndedAt: 2015-10-27 06:19:14 -0400 (Tue, 27 Oct 2015) |
EllapsedTime: 278.4 seconds |
RetCode: 0 |
Status: OK |
CheckDir: netbiov.Rcheck |
Warnings: 0 |
Command output
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### Running command:
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### /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD check --no-vignettes --timings netbiov_1.4.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.2-bioc/meat/netbiov.Rcheck’
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘netbiov/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘netbiov’ version ‘1.4.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘netbiov’ can be installed ... [1s/1s] OK
* checking installed package size ... NOTE
installed size is 18.6Mb
sub-directories of 1Mb or more:
doc 17.8Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... NOTE
The following files are already in R: ‘Sweave.sty’
Please remove them from your package.
* checking examples ... [236s/237s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
level.plot 100.953 0.447 101.567
plot.abstract.module 53.655 0.052 53.754
plot.modules 45.868 0.132 46.075
mst.plot 17.717 0.068 17.813
mst.plot.mod 10.942 0.016 10.967
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’ [16s/16s]
[16s/16s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 3 NOTEs
See
‘/home/biocbuild/bbs-3.2-bioc/meat/netbiov.Rcheck/00check.log’
for details.
netbiov.Rcheck/00install.out:
* installing *source* package ‘netbiov’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (netbiov)
netbiov.Rcheck/netbiov-Ex.timings:
name | user | system | elapsed
|
PPI_Athalina | 0.024 | 0.000 | 0.024 |
|
level.plot | 100.953 | 0.447 | 101.567 |
|
mst.plot | 17.717 | 0.068 | 17.813 |
|
mst.plot.mod | 10.942 | 0.016 | 10.967 |
|
plot.NetworkSperical | 0.968 | 0.004 | 0.972 |
|
plot.NetworkSperical.startSet | 0.66 | 0.02 | 0.68 |
|
plot.abstract.module | 53.655 | 0.052 | 53.754 |
|
plot.abstract.nodes | 0.620 | 0.004 | 0.625 |
|
plot.modules | 45.868 | 0.132 | 46.075 |
|
plot.netbiov | 1.745 | 0.004 | 1.749 |
|
plot.spiral.graph | 0.596 | 0.004 | 0.600 |
|
split.mst | 1.415 | 0.000 | 1.415 |
|