BioC 3.2: CHECK report for acde on windows1.bioconductor.org
This page was generated on 2015-10-27 17:32:19 -0400 (Tue, 27 Oct 2015).
acde 1.0.0
Juan Pablo Acosta
| Snapshot Date: 2015-10-26 19:24:07 -0400 (Mon, 26 Oct 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/acde | | Last Changed Rev: 109589 / Revision: 109947 | | Last Changed Date: 2015-10-13 15:36:05 -0400 (Tue, 13 Oct 2015) |
| linux1.bioconductor.org | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | OK | |  |
| windows1.bioconductor.org | Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | [ OK ] | OK | |
| perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | OK | OK | OK | |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | OK | OK | |
Summary
| Package: acde
|
| Version: 1.0.0
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| Command: rm -rf acde.buildbin-libdir acde.Rcheck && mkdir acde.buildbin-libdir acde.Rcheck && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=acde.buildbin-libdir acde_1.0.0.tar.gz >acde.Rcheck\00install.out 2>&1 && cp acde.Rcheck\00install.out acde-install.out && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=acde.buildbin-libdir --install="check:acde-install.out" --force-multiarch --no-vignettes --timings acde_1.0.0.tar.gz
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| StartedAt: 2015-10-26 23:33:57 -0400 (Mon, 26 Oct 2015)
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| EndedAt: 2015-10-26 23:36:01 -0400 (Mon, 26 Oct 2015)
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| EllapsedTime: 123.5 seconds
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| RetCode: 0
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| Status: OK
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| CheckDir: acde.Rcheck
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| Warnings: 0
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Command output
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### Running command:
###
### rm -rf acde.buildbin-libdir acde.Rcheck && mkdir acde.buildbin-libdir acde.Rcheck && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=acde.buildbin-libdir acde_1.0.0.tar.gz >acde.Rcheck\00install.out 2>&1 && cp acde.Rcheck\00install.out acde-install.out && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=acde.buildbin-libdir --install="check:acde-install.out" --force-multiarch --no-vignettes --timings acde_1.0.0.tar.gz
###
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* using log directory 'C:/biocbld/bbs-3.2-bioc/meat/acde.Rcheck'
* using R version 3.2.2 Patched (2015-08-16 r69094)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'acde/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'acde' version '1.0.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'acde' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [45s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
bcaFDR 33.75 0.01 33.8
** running examples for arch 'x64' ... [53s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
bcaFDR 39.57 0 39.61
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'runTests.R' [1s]
[2s] OK
** running tests for arch 'x64' ...
Running 'runTests.R' [1s]
[1s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
acde.Rcheck/00install.out:
install for i386
* installing *source* package 'acde' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'acde' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'acde' as acde_1.0.0.zip
* DONE (acde)
acde.Rcheck/examples_i386/acde-Ex.timings:
| name | user | system | elapsed
|
| ac | 0.19 | 0.02 | 0.20 |
|
| acde-package | 2.21 | 0.03 | 2.27 |
|
| bcaFDR | 33.75 | 0.01 | 33.80 |
|
| fdr | 0.66 | 0.00 | 0.65 |
|
| phytophthora | 0 | 0 | 0 |
|
| plot.STP | 0.70 | 0.02 | 0.72 |
|
| plot.TC | 1.66 | 0.00 | 1.65 |
|
| print.STP | 0.56 | 0.00 | 0.56 |
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| print.TC | 1.83 | 0.00 | 1.83 |
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| qval | 0.55 | 0.00 | 0.55 |
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| stp | 0.53 | 0.00 | 0.53 |
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| tc | 1.94 | 0.00 | 1.94 |
|
acde.Rcheck/examples_x64/acde-Ex.timings:
| name | user | system | elapsed
|
| ac | 0.23 | 0.00 | 0.24 |
|
| acde-package | 2.80 | 0.02 | 2.81 |
|
| bcaFDR | 39.57 | 0.00 | 39.61 |
|
| fdr | 0.65 | 0.00 | 0.64 |
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| phytophthora | 0.01 | 0.00 | 0.01 |
|
| plot.STP | 0.8 | 0.0 | 0.8 |
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| plot.TC | 2.25 | 0.00 | 2.25 |
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| print.STP | 0.66 | 0.00 | 0.65 |
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| print.TC | 2.44 | 0.00 | 2.44 |
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| qval | 0.65 | 0.00 | 0.66 |
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| stp | 0.68 | 0.00 | 0.67 |
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| tc | 2.03 | 0.00 | 2.03 |
|