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BioC 3.2: INSTALL report for SeqArray on linux1.bioconductor.org

This page was generated on 2015-10-27 17:25:50 -0400 (Tue, 27 Oct 2015).

Package 955/1104HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SeqArray 1.10.1
Xiuwen Zheng
Snapshot Date: 2015-10-26 19:24:07 -0400 (Mon, 26 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/SeqArray
Last Changed Rev: 109846 / Revision: 109947
Last Changed Date: 2015-10-22 20:16:34 -0400 (Thu, 22 Oct 2015)
linux1.bioconductor.org Linux (Ubuntu 14.04.2 LTS) / x86_64 [ OK ] OK  OK UNNEEDED, same version exists in internal repository
windows1.bioconductor.org Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: SeqArray
Version: 1.10.1
Command: /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD INSTALL SeqArray
StartedAt: 2015-10-26 20:13:56 -0400 (Mon, 26 Oct 2015)
EndedAt: 2015-10-26 20:14:28 -0400 (Mon, 26 Oct 2015)
EllapsedTime: 32.0 seconds
RetCode: 0
Status:  OK 

Command output

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###
### Running command:
###
###   /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD INSTALL SeqArray
###
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* installing to library ‘/home/biocbuild/bbs-3.2-bioc/R/library’
* installing *source* package ‘SeqArray’ ...
** libs
g++ -I/home/biocbuild/bbs-3.2-bioc/R/include -DNDEBUG -I. -DUSING_R -I/usr/local/include -I"/home/biocbuild/bbs-3.2-bioc/R/library/gdsfmt/include"   -fpic  -g -O2  -Wall -c ConvGDS2VCF.cpp -o ConvGDS2VCF.o
g++ -I/home/biocbuild/bbs-3.2-bioc/R/include -DNDEBUG -I. -DUSING_R -I/usr/local/include -I"/home/biocbuild/bbs-3.2-bioc/R/library/gdsfmt/include"   -fpic  -g -O2  -Wall -c ConvToGDS.cpp -o ConvToGDS.o
g++ -I/home/biocbuild/bbs-3.2-bioc/R/include -DNDEBUG -I. -DUSING_R -I/usr/local/include -I"/home/biocbuild/bbs-3.2-bioc/R/library/gdsfmt/include"   -fpic  -g -O2  -Wall -c ConvVCF2GDS.cpp -o ConvVCF2GDS.o
g++ -I/home/biocbuild/bbs-3.2-bioc/R/include -DNDEBUG -I. -DUSING_R -I/usr/local/include -I"/home/biocbuild/bbs-3.2-bioc/R/library/gdsfmt/include"   -fpic  -g -O2  -Wall -c GetData.cpp -o GetData.o
g++ -I/home/biocbuild/bbs-3.2-bioc/R/include -DNDEBUG -I. -DUSING_R -I/usr/local/include -I"/home/biocbuild/bbs-3.2-bioc/R/library/gdsfmt/include"   -fpic  -g -O2  -Wall -c LinkSNPRelate.cpp -o LinkSNPRelate.o
g++ -I/home/biocbuild/bbs-3.2-bioc/R/include -DNDEBUG -I. -DUSING_R -I/usr/local/include -I"/home/biocbuild/bbs-3.2-bioc/R/library/gdsfmt/include"   -fpic  -g -O2  -Wall -c Methods.cpp -o Methods.o
gcc -std=gnu99 -I/home/biocbuild/bbs-3.2-bioc/R/include -DNDEBUG -I. -DUSING_R -I/usr/local/include -I"/home/biocbuild/bbs-3.2-bioc/R/library/gdsfmt/include"   -fpic  -g -O2  -Wall -c R_SeqArray.c -o R_SeqArray.o
g++ -I/home/biocbuild/bbs-3.2-bioc/R/include -DNDEBUG -I. -DUSING_R -I/usr/local/include -I"/home/biocbuild/bbs-3.2-bioc/R/library/gdsfmt/include"   -fpic  -g -O2  -Wall -c ReadBySample.cpp -o ReadBySample.o
g++ -I/home/biocbuild/bbs-3.2-bioc/R/include -DNDEBUG -I. -DUSING_R -I/usr/local/include -I"/home/biocbuild/bbs-3.2-bioc/R/library/gdsfmt/include"   -fpic  -g -O2  -Wall -c ReadByVariant.cpp -o ReadByVariant.o
g++ -I/home/biocbuild/bbs-3.2-bioc/R/include -DNDEBUG -I. -DUSING_R -I/usr/local/include -I"/home/biocbuild/bbs-3.2-bioc/R/library/gdsfmt/include"   -fpic  -g -O2  -Wall -c SeqArray.cpp -o SeqArray.o
g++ -shared -L/home/biocbuild/bbs-3.2-bioc/R/lib -L/usr/local/lib -o SeqArray.so ConvGDS2VCF.o ConvToGDS.o ConvVCF2GDS.o GetData.o LinkSNPRelate.o Methods.o R_SeqArray.o ReadBySample.o ReadByVariant.o SeqArray.o -L/home/biocbuild/bbs-3.2-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.2-bioc/R/library/SeqArray/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘AnalysisTutorial.Rmd’ 
   ‘SeqArrayTutorial.Rmd’ 
** testing if installed package can be loaded
* DONE (SeqArray)