BioC 3.2: CHECK report for RedeR on linux1.bioconductor.org
This page was generated on 2015-10-27 17:24:58 -0400 (Tue, 27 Oct 2015).
RedeR 1.18.0 Mauro Castro
Snapshot Date: 2015-10-26 19:24:07 -0400 (Mon, 26 Oct 2015) | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/RedeR | Last Changed Rev: 109589 / Revision: 109947 | Last Changed Date: 2015-10-13 15:36:05 -0400 (Tue, 13 Oct 2015) |
| linux1.bioconductor.org | Linux (Ubuntu 14.04.2 LTS) / x86_64 | OK | OK | [ OK ] | |  |
windows1.bioconductor.org | Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK | OK |  |
perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK | OK |  |
oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | OK | OK |  |
Summary
Package: RedeR |
Version: 1.18.0 |
Command: /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD check --no-vignettes --timings RedeR_1.18.0.tar.gz |
StartedAt: 2015-10-27 07:19:41 -0400 (Tue, 27 Oct 2015) |
EndedAt: 2015-10-27 07:20:17 -0400 (Tue, 27 Oct 2015) |
EllapsedTime: 35.9 seconds |
RetCode: 0 |
Status: OK |
CheckDir: RedeR.Rcheck |
Warnings: 0 |
Command output
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###
### Running command:
###
### /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD check --no-vignettes --timings RedeR_1.18.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.2-bioc/meat/RedeR.Rcheck’
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RedeR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RedeR’ version ‘1.18.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RedeR’ can be installed ... [2s/2s] OK
* checking installed package size ... NOTE
installed size is 8.8Mb
sub-directories of 1Mb or more:
data 3.2Mb
java 4.3Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
addSubgraph.list,RedPort : .local: no visible global function
definition for ‘G<-’
addSubgraph,RedPort : .local: no visible global function definition for
‘G<-’
nesthc,RedPort : .local: no visible global function definition for
‘pvpick’
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [2s/2s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/home/biocbuild/bbs-3.2-bioc/meat/RedeR.Rcheck/00check.log’
for details.
RedeR.Rcheck/00install.out:
* installing *source* package ‘RedeR’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (RedeR)
RedeR.Rcheck/RedeR-Ex.timings:
name | user | system | elapsed
|
RedPort-class | 0.002 | 0.000 | 0.001 |
|
RedPort | 0.001 | 0.000 | 0.001 |
|
RedeR.data | 0.522 | 0.004 | 0.529 |
|
addEdgeBetweenContainers | 0.000 | 0.003 | 0.003 |
|
addEdges | 0.000 | 0.000 | 0.001 |
|
addGraph | 0.001 | 0.000 | 0.001 |
|
addLegend | 0.001 | 0.000 | 0.001 |
|
addNodes | 0 | 0 | 0 |
|
addSeries | 0.001 | 0.000 | 0.001 |
|
addSubgraph | 0.001 | 0.000 | 0.001 |
|
addSubgraph.list | 0.001 | 0.000 | 0.001 |
|
att | 0.079 | 0.000 | 0.079 |
|
calld | 0 | 0 | 0 |
|
cea | 0.048 | 0.000 | 0.048 |
|
deSelectEdges | 0.001 | 0.000 | 0.001 |
|
deSelectGraph | 0.000 | 0.000 | 0.001 |
|
deSelectNodes | 0.001 | 0.000 | 0.001 |
|
deleteEdges | 0.001 | 0.000 | 0.000 |
|
deleteNodes | 0.001 | 0.000 | 0.001 |
|
deleteSelectedEdges | 0.001 | 0.000 | 0.000 |
|
deleteSelectedNodes | 0.001 | 0.000 | 0.001 |
|
duplicateGraph | 0.001 | 0.000 | 0.001 |
|
exitd | 0.001 | 0.000 | 0.001 |
|
getContainerComponets | 0.001 | 0.000 | 0.001 |
|
getEdgeIDs | 0.001 | 0.000 | 0.001 |
|
getEdges | 0.001 | 0.000 | 0.000 |
|
getGraph | 0.001 | 0.000 | 0.001 |
|
getNodeIDs | 0 | 0 | 0 |
|
getNodes | 0.001 | 0.000 | 0.001 |
|
getSourceEdgeIDs | 0.001 | 0.000 | 0.000 |
|
getTargetEdgeIDs | 0.001 | 0.000 | 0.001 |
|
gtoy.rm | 0 | 0 | 0 |
|
isDynamicsActive | 0 | 0 | 0 |
|
mergeNodes | 0.000 | 0.004 | 0.001 |
|
mergeOutEdges | 0.000 | 0.000 | 0.001 |
|
nestNodes | 0.000 | 0.000 | 0.001 |
|
nesthc | 0 | 0 | 0 |
|
ping | 0.001 | 0.000 | 0.001 |
|
relax | 0.001 | 0.000 | 0.001 |
|
resetd | 0.001 | 0.000 | 0.001 |
|
selectAllEdges | 0.001 | 0.000 | 0.001 |
|
selectAllNodes | 0.001 | 0.000 | 0.001 |
|
selectEdges | 0 | 0 | 0 |
|
selectGraph | 0.001 | 0.000 | 0.001 |
|
selectNodes | 0.001 | 0.000 | 0.001 |
|
setArrowDirection | 0.001 | 0.000 | 0.001 |
|
subg | 0.078 | 0.000 | 0.077 |
|
updateContainerSize | 0.001 | 0.000 | 0.001 |
|
updateGraph | 0.001 | 0.000 | 0.001 |
|
version | 0.000 | 0.000 | 0.001 |
|