BioC 3.2: CHECK report for Icens on linux1.bioconductor.org
This page was generated on 2015-10-27 17:23:32 -0400 (Tue, 27 Oct 2015).
Icens 1.42.0 Bioconductor Package Maintainer
Snapshot Date: 2015-10-26 19:24:07 -0400 (Mon, 26 Oct 2015) | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/Icens | Last Changed Rev: 109589 / Revision: 109947 | Last Changed Date: 2015-10-13 15:36:05 -0400 (Tue, 13 Oct 2015) |
| linux1.bioconductor.org | Linux (Ubuntu 14.04.2 LTS) / x86_64 | OK | OK | [ OK ] | |  |
windows1.bioconductor.org | Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK | OK |  |
perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK | OK |  |
oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | OK | OK |  |
Summary
Package: Icens |
Version: 1.42.0 |
Command: /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD check --no-vignettes --timings Icens_1.42.0.tar.gz |
StartedAt: 2015-10-27 04:44:33 -0400 (Tue, 27 Oct 2015) |
EndedAt: 2015-10-27 04:44:57 -0400 (Tue, 27 Oct 2015) |
EllapsedTime: 23.5 seconds |
RetCode: 0 |
Status: OK |
CheckDir: Icens.Rcheck |
Warnings: 0 |
Command output
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###
### Running command:
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### /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD check --no-vignettes --timings Icens_1.42.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.2-bioc/meat/Icens.Rcheck’
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Icens/DESCRIPTION’ ... OK
* this is package ‘Icens’ version ‘1.42.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Icens’ can be installed ... [1s/1s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: ‘survival’
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
VEMICMmac: no visible binding for global variable ‘EMstep’
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [9s/9s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testbv.R’ [1s/1s]
Comparing ‘testbv.Rout’ to ‘testbv.Rout.save’ ...117c117
< [6] 1.461001e+00 1.207129e+00 1.000000e+00 4.748624e-01 -2.640501e-16
---
> [6] 1.461001e+00 1.207129e+00 1.000000e+00 4.748624e-01 -2.480201e-16
[1s/1s] OK
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/home/biocbuild/bbs-3.2-bioc/meat/Icens.Rcheck/00check.log’
for details.
Icens.Rcheck/00install.out:
* installing *source* package ‘Icens’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (Icens)
Icens.Rcheck/Icens-Ex.timings:
name | user | system | elapsed
|
BVcliques | 0.278 | 0.000 | 0.278 |
|
BVclmat | 1.685 | 0.004 | 1.690 |
|
BVsupport | 1.294 | 0.000 | 1.296 |
|
EM | 0.079 | 0.000 | 0.080 |
|
EMICM | 0.076 | 0.000 | 0.077 |
|
ISDM | 4.201 | 0.008 | 4.211 |
|
MLEintvl | 0.015 | 0.000 | 0.015 |
|
Maclist | 0.005 | 0.004 | 0.009 |
|
Macmat | 0.008 | 0.000 | 0.008 |
|
PGM | 0.072 | 0.007 | 0.080 |
|
Plotboxes | 0.053 | 0.000 | 0.053 |
|
VEM | 0.147 | 0.000 | 0.148 |
|
cmv | 0.003 | 0.000 | 0.003 |
|
cosmesis | 0.003 | 0.000 | 0.003 |
|
hiv | 0.008 | 0.000 | 0.008 |
|
plot.icsurv | 0.297 | 0.000 | 0.297 |
|
pruitt | 0.002 | 0.000 | 0.002 |
|