BioC 3.2: CHECK report for GraphAT on linux1.bioconductor.org
This page was generated on 2015-10-27 17:23:35 -0400 (Tue, 27 Oct 2015).
GraphAT 1.42.0 Thomas LaFramboise
Snapshot Date: 2015-10-26 19:24:07 -0400 (Mon, 26 Oct 2015) | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/GraphAT | Last Changed Rev: 109589 / Revision: 109947 | Last Changed Date: 2015-10-13 15:36:05 -0400 (Tue, 13 Oct 2015) |
| linux1.bioconductor.org | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | [ OK ] | |  |
windows1.bioconductor.org | Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | OK | OK |  |
perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | OK | OK | OK |  |
oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | OK | OK |  |
Summary
Package: GraphAT |
Version: 1.42.0 |
Command: /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD check --no-vignettes --timings GraphAT_1.42.0.tar.gz |
StartedAt: 2015-10-27 04:24:04 -0400 (Tue, 27 Oct 2015) |
EndedAt: 2015-10-27 04:24:30 -0400 (Tue, 27 Oct 2015) |
EllapsedTime: 26.5 seconds |
RetCode: 0 |
Status: OK |
CheckDir: GraphAT.Rcheck |
Warnings: 0 |
Command output
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### Running command:
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### /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD check --no-vignettes --timings GraphAT_1.42.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.2-bioc/meat/GraphAT.Rcheck’
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘GraphAT/DESCRIPTION’ ... OK
* this is package ‘GraphAT’ version ‘1.42.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘GraphAT’ can be installed ... [1s/1s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
Packages listed in more than one of Depends, Imports, Suggests, Enhances:
‘graph’ ‘methods’
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: depthmat.Rd:28: Dropping empty section \references
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [3s/3s] OK
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/home/biocbuild/bbs-3.2-bioc/meat/GraphAT.Rcheck/00check.log’
for details.
GraphAT.Rcheck/00install.out:
* installing *source* package ‘GraphAT’ ...
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (GraphAT)
GraphAT.Rcheck/GraphAT-Ex.timings:
name | user | system | elapsed
|
Phenoclusters | 0.378 | 0.068 | 0.446 |
|
causton | 0.225 | 0.016 | 0.240 |
|
cellcycle | 0.122 | 0.032 | 0.155 |
|
clust2Mat | 0.001 | 0.000 | 0.001 |
|
depthmat | 0.177 | 0.032 | 0.209 |
|
getpvalue | 0.005 | 0.000 | 0.005 |
|
giaever | 0.274 | 0.004 | 0.279 |
|
mRNAclusters | 0.164 | 0.064 | 0.228 |
|
makeClustM | 0.001 | 0.000 | 0.001 |
|
mat2UndirG | 0.008 | 0.000 | 0.008 |
|
permPower | 0.479 | 0.008 | 0.487 |
|
perms | 0.001 | 0.000 | 0.001 |
|