BioC 3.2: CHECK report for EBSeq on windows1.bioconductor.org
This page was generated on 2015-10-27 17:30:32 -0400 (Tue, 27 Oct 2015).
EBSeq 1.10.0 Ning Leng
Snapshot Date: 2015-10-26 19:24:07 -0400 (Mon, 26 Oct 2015) | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/EBSeq | Last Changed Rev: 109589 / Revision: 109947 | Last Changed Date: 2015-10-13 15:36:05 -0400 (Tue, 13 Oct 2015) |
| linux1.bioconductor.org | Linux (Ubuntu 14.04.2 LTS) / x86_64 | OK | OK | OK | |  |
windows1.bioconductor.org | Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | [ OK ] | OK |  |
perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK | OK |  |
oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | OK | OK |  |
Summary
Package: EBSeq
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Version: 1.10.0
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Command: rm -rf EBSeq.buildbin-libdir EBSeq.Rcheck && mkdir EBSeq.buildbin-libdir EBSeq.Rcheck && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=EBSeq.buildbin-libdir EBSeq_1.10.0.tar.gz >EBSeq.Rcheck\00install.out 2>&1 && cp EBSeq.Rcheck\00install.out EBSeq-install.out && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=EBSeq.buildbin-libdir --install="check:EBSeq-install.out" --force-multiarch --no-vignettes --timings EBSeq_1.10.0.tar.gz
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StartedAt: 2015-10-27 01:27:30 -0400 (Tue, 27 Oct 2015)
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EndedAt: 2015-10-27 01:28:49 -0400 (Tue, 27 Oct 2015)
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EllapsedTime: 78.8 seconds
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RetCode: 0
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Status: OK
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CheckDir: EBSeq.Rcheck
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Warnings: 0
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Command output
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### Running command:
###
### rm -rf EBSeq.buildbin-libdir EBSeq.Rcheck && mkdir EBSeq.buildbin-libdir EBSeq.Rcheck && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=EBSeq.buildbin-libdir EBSeq_1.10.0.tar.gz >EBSeq.Rcheck\00install.out 2>&1 && cp EBSeq.Rcheck\00install.out EBSeq-install.out && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=EBSeq.buildbin-libdir --install="check:EBSeq-install.out" --force-multiarch --no-vignettes --timings EBSeq_1.10.0.tar.gz
###
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* using log directory 'C:/biocbld/bbs-3.2-bioc/meat/EBSeq.Rcheck'
* using R version 3.2.2 Patched (2015-08-16 r69094)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'EBSeq/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'EBSeq' version '1.10.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'EBSeq' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [24s] OK
** running examples for arch 'x64' ... [25s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
EBMultiTest 5.14 0 5.14
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'C:/biocbld/bbs-3.2-bioc/meat/EBSeq.Rcheck/00check.log'
for details.
EBSeq.Rcheck/00install.out:
install for i386
* installing *source* package 'EBSeq' ...
** R
** data
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'EBSeq' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'EBSeq' as EBSeq_1.10.0.zip
* DONE (EBSeq)
EBSeq.Rcheck/examples_i386/EBSeq-Ex.timings:
name | user | system | elapsed
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DenNHist | 3.03 | 0.00 | 3.03 |
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EBMultiTest | 4.14 | 0.00 | 4.14 |
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EBSeq_NingLeng-package | 0.45 | 0.00 | 0.45 |
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EBTest | 0.39 | 0.00 | 0.39 |
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GeneMat | 0 | 0 | 0 |
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GetDEResults | 0.48 | 0.00 | 0.48 |
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GetMultiFC | 4.20 | 0.00 | 4.21 |
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GetMultiPP | 4.55 | 0.01 | 4.56 |
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GetNg | 0 | 0 | 0 |
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GetNormalizedMat | 0.02 | 0.00 | 0.02 |
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GetPP | 0.43 | 0.00 | 0.43 |
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GetPPMat | 0.58 | 0.00 | 0.58 |
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GetPatterns | 0 | 0 | 0 |
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IsoList | 0 | 0 | 0 |
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IsoMultiList | 0.02 | 0.00 | 0.02 |
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Likefun | 0 | 0 | 0 |
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LikefunMulti | 0 | 0 | 0 |
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LogN | 0 | 0 | 0 |
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LogNMulti | 0 | 0 | 0 |
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MedianNorm | 0 | 0 | 0 |
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MultiGeneMat | 0.00 | 0.02 | 0.01 |
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PlotPattern | 0 | 0 | 0 |
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PlotPostVsRawFC | 0.94 | 0.00 | 0.94 |
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PolyFitPlot | 0.01 | 0.00 | 0.02 |
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PostFC | 0.59 | 0.00 | 0.59 |
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QQP | 3.3 | 0.0 | 3.3 |
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QuantileNorm | 0.00 | 0.02 | 0.01 |
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RankNorm | 0.02 | 0.00 | 0.02 |
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beta.mom | 0 | 0 | 0 |
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crit_fun | 0.78 | 0.00 | 0.78 |
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f0 | 0 | 0 | 0 |
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f1 | 0 | 0 | 0 |
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EBSeq.Rcheck/examples_x64/EBSeq-Ex.timings:
name | user | system | elapsed
|
DenNHist | 2.69 | 0.03 | 2.71 |
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EBMultiTest | 5.14 | 0.00 | 5.14 |
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EBSeq_NingLeng-package | 0.41 | 0.00 | 0.41 |
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EBTest | 0.42 | 0.00 | 0.42 |
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GeneMat | 0 | 0 | 0 |
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GetDEResults | 0.37 | 0.00 | 0.37 |
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GetMultiFC | 4.90 | 0.00 | 4.89 |
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GetMultiPP | 4.59 | 0.02 | 4.61 |
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GetNg | 0.01 | 0.00 | 0.02 |
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GetNormalizedMat | 0.02 | 0.00 | 0.02 |
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GetPP | 0.56 | 0.00 | 0.56 |
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GetPPMat | 0.92 | 0.00 | 0.92 |
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GetPatterns | 0 | 0 | 0 |
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IsoList | 0 | 0 | 0 |
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IsoMultiList | 0.02 | 0.00 | 0.02 |
|
Likefun | 0 | 0 | 0 |
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LikefunMulti | 0 | 0 | 0 |
|
LogN | 0 | 0 | 0 |
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LogNMulti | 0 | 0 | 0 |
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MedianNorm | 0 | 0 | 0 |
|
MultiGeneMat | 0 | 0 | 0 |
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PlotPattern | 0.01 | 0.00 | 0.02 |
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PlotPostVsRawFC | 0.81 | 0.00 | 0.81 |
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PolyFitPlot | 0.02 | 0.00 | 0.01 |
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PostFC | 0.55 | 0.00 | 0.55 |
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QQP | 2.57 | 0.00 | 2.58 |
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QuantileNorm | 0 | 0 | 0 |
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RankNorm | 0.02 | 0.00 | 0.02 |
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beta.mom | 0 | 0 | 0 |
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crit_fun | 0.66 | 0.00 | 0.66 |
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f0 | 0 | 0 | 0 |
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f1 | 0 | 0 | 0 |
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