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This page was generated on 2015-10-27 17:32:34 -0400 (Tue, 27 Oct 2015).
| Package 248/1104 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | |||||
| DAPAR 1.0.0 Samuel Wieczorek
| linux1.bioconductor.org | Linux (Ubuntu 14.04.2 LTS) / x86_64 | OK | OK | OK |  | |||||
| windows1.bioconductor.org | Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | [ OK ] | OK | | |||||
| perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | TIMEOUT | skipped | skipped | ||||||
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | OK | OK | |
| Package: DAPAR |
| Version: 1.0.0 |
| Command: rm -rf DAPAR.buildbin-libdir DAPAR.Rcheck && mkdir DAPAR.buildbin-libdir DAPAR.Rcheck && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=DAPAR.buildbin-libdir DAPAR_1.0.0.tar.gz >DAPAR.Rcheck\00install.out 2>&1 && cp DAPAR.Rcheck\00install.out DAPAR-install.out && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=DAPAR.buildbin-libdir --install="check:DAPAR-install.out" --force-multiarch --no-vignettes --timings DAPAR_1.0.0.tar.gz |
| StartedAt: 2015-10-27 01:06:43 -0400 (Tue, 27 Oct 2015) |
| EndedAt: 2015-10-27 01:10:16 -0400 (Tue, 27 Oct 2015) |
| EllapsedTime: 213.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: DAPAR.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf DAPAR.buildbin-libdir DAPAR.Rcheck && mkdir DAPAR.buildbin-libdir DAPAR.Rcheck && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=DAPAR.buildbin-libdir DAPAR_1.0.0.tar.gz >DAPAR.Rcheck\00install.out 2>&1 && cp DAPAR.Rcheck\00install.out DAPAR-install.out && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=DAPAR.buildbin-libdir --install="check:DAPAR-install.out" --force-multiarch --no-vignettes --timings DAPAR_1.0.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/biocbld/bbs-3.2-bioc/meat/DAPAR.Rcheck' * using R version 3.2.2 Patched (2015-08-16 r69094) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'DAPAR/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'DAPAR' version '1.0.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'DAPAR' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE boxPlotD: no visible global function definition for 'exprs' boxPlotD: no visible global function definition for 'pData' corrMatrixD: no visible global function definition for 'pData' corrMatrixD: no visible global function definition for 'exprs' createMSnset: no visible global function definition for 'exprs<-' createMSnset: no visible global function definition for 'exprs' densityPlotD: no visible global function definition for 'pData' densityPlotD: no visible global function definition for 'exprs' diffAna: no visible global function definition for 'exprs' diffAnaLimma: no visible global function definition for 'exprs' diffAnaLimma: no visible global function definition for 'pData' diffAnaWelch: no visible global function definition for 'exprs' getIndicesConditions: no visible global function definition for 'pData' getNumberOfEmptyLines: no visible global function definition for 'exprs' getPaletteForLabels: no visible global function definition for 'pData' getPourcentageOfMV: no visible global function definition for 'exprs' heatmapD: no visible global function definition for 'exprs' mvFilter: no visible global function definition for 'pData' mvFilter: no visible global function definition for 'exprs' mvHisto: no visible global function definition for 'pData' mvHisto: no visible global function definition for 'exprs' mvImage: no visible global function definition for 'pData' mvImage: no visible global function definition for 'exprs' mvImage: no visible global function definition for 'exprs<-' mvImputation: no visible global function definition for 'exprs' mvImputation: no visible global function definition for 'exprs<-' mvPerLinesHisto: no visible global function definition for 'exprs' mvPerLinesHisto: no visible global function definition for 'pData' mvTypePlot: no visible global function definition for 'exprs' mvTypePlot: no visible global function definition for 'pData' normalizeD: no visible global function definition for 'exprs' normalizeD: no visible global function definition for 'exprs<-' normalizeD: no visible global function definition for 'pData' varianceDistD: no visible global function definition for 'pData' varianceDistD: no visible global function definition for 'exprs' writeMSnsetToExcel: no visible global function definition for 'exprs' writeMSnsetToExcel: no visible global function definition for 'pData' * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... [15s] OK ** running examples for arch 'x64' ... [15s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... Running 'testthat.R' [5s] [6s] OK ** running tests for arch 'x64' ... Running 'testthat.R' [7s] [7s] OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'C:/biocbld/bbs-3.2-bioc/meat/DAPAR.Rcheck/00check.log' for details.
DAPAR.Rcheck/00install.out:
install for i386 * installing *source* package 'DAPAR' ... ** R ** data ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded install for x64 * installing *source* package 'DAPAR' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'DAPAR' as DAPAR_1.0.0.zip * DONE (DAPAR)
DAPAR.Rcheck/examples_i386/DAPAR-Ex.timings:
| name | user | system | elapsed | |
| boxPlotD | 0.15 | 0.00 | 0.14 | |
| corrMatrixD | 0.31 | 0.00 | 0.32 | |
| createMSnset | 0.12 | 0.00 | 0.12 | |
| densityPlotD | 0.16 | 0.01 | 0.17 | |
| diffAna | 0.48 | 0.07 | 0.55 | |
| diffAnaComputeFDR | 0.24 | 0.04 | 0.28 | |
| diffAnaGetSignificant | 0.12 | 0.00 | 0.13 | |
| diffAnaLimma | 0.11 | 0.00 | 0.11 | |
| diffAnaSave | 0.11 | 0.02 | 0.12 | |
| diffAnaVolcanoplot | 0.13 | 0.00 | 0.13 | |
| diffAnaWelch | 0.12 | 0.00 | 0.12 | |
| getIndicesConditions | 0.11 | 0.00 | 0.11 | |
| getNumberOfEmptyLines | 0.13 | 0.01 | 0.14 | |
| getPaletteForLabels | 0.17 | 0.00 | 0.17 | |
| getPourcentageOfMV | 0.19 | 0.00 | 0.19 | |
| heatmapD | 0.06 | 0.00 | 0.06 | |
| mvFilter | 0.42 | 0.00 | 0.43 | |
| mvHisto | 0.11 | 0.00 | 0.10 | |
| mvImage | 2.39 | 0.02 | 2.41 | |
| mvImputation | 0.14 | 0.00 | 0.14 | |
| mvPerLinesHisto | 0.13 | 0.00 | 0.13 | |
| mvPieChart | 0.13 | 0.00 | 0.13 | |
| mvTypePlot | 0.29 | 0.00 | 0.29 | |
| normalizeD | 0.13 | 0.00 | 0.13 | |
| varianceDistD | 0.36 | 0.00 | 0.36 | |
| writeMSnsetToExcel | 1.32 | 0.11 | 2.25 | |
DAPAR.Rcheck/examples_x64/DAPAR-Ex.timings:
| name | user | system | elapsed | |
| boxPlotD | 0.11 | 0.00 | 0.11 | |
| corrMatrixD | 0.26 | 0.02 | 0.28 | |
| createMSnset | 0.13 | 0.02 | 0.14 | |
| densityPlotD | 0.14 | 0.00 | 0.14 | |
| diffAna | 0.45 | 0.03 | 0.48 | |
| diffAnaComputeFDR | 0.17 | 0.00 | 0.18 | |
| diffAnaGetSignificant | 0.09 | 0.00 | 0.09 | |
| diffAnaLimma | 0.11 | 0.01 | 0.13 | |
| diffAnaSave | 0.09 | 0.00 | 0.09 | |
| diffAnaVolcanoplot | 0.11 | 0.00 | 0.11 | |
| diffAnaWelch | 0.10 | 0.00 | 0.09 | |
| getIndicesConditions | 0.09 | 0.02 | 0.11 | |
| getNumberOfEmptyLines | 0.09 | 0.00 | 0.10 | |
| getPaletteForLabels | 0.09 | 0.00 | 0.09 | |
| getPourcentageOfMV | 0.11 | 0.00 | 0.11 | |
| heatmapD | 0.03 | 0.00 | 0.04 | |
| mvFilter | 0.18 | 0.00 | 0.17 | |
| mvHisto | 0.10 | 0.00 | 0.11 | |
| mvImage | 3.04 | 0.00 | 3.03 | |
| mvImputation | 0.09 | 0.02 | 0.11 | |
| mvPerLinesHisto | 0.11 | 0.00 | 0.11 | |
| mvPieChart | 0.13 | 0.00 | 0.12 | |
| mvTypePlot | 0.23 | 0.03 | 0.27 | |
| normalizeD | 0.16 | 0.00 | 0.15 | |
| varianceDistD | 0.34 | 0.03 | 0.38 | |
| writeMSnsetToExcel | 2.80 | 0.24 | 0.98 | |