BioC 3.2: CHECK report for DAPAR on windows1.bioconductor.org
This page was generated on 2015-10-27 17:32:34 -0400 (Tue, 27 Oct 2015).
DAPAR 1.0.0 Samuel Wieczorek
Snapshot Date: 2015-10-26 19:24:07 -0400 (Mon, 26 Oct 2015) | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/DAPAR | Last Changed Rev: 109589 / Revision: 109947 | Last Changed Date: 2015-10-13 15:36:05 -0400 (Tue, 13 Oct 2015) |
| linux1.bioconductor.org | Linux (Ubuntu 14.04.2 LTS) / x86_64 | OK | OK | OK | |  |
windows1.bioconductor.org | Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | [ OK ] | OK |  |
perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | TIMEOUT | skipped | skipped | |
oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | OK | OK |  |
Summary
Package: DAPAR
|
Version: 1.0.0
|
Command: rm -rf DAPAR.buildbin-libdir DAPAR.Rcheck && mkdir DAPAR.buildbin-libdir DAPAR.Rcheck && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=DAPAR.buildbin-libdir DAPAR_1.0.0.tar.gz >DAPAR.Rcheck\00install.out 2>&1 && cp DAPAR.Rcheck\00install.out DAPAR-install.out && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=DAPAR.buildbin-libdir --install="check:DAPAR-install.out" --force-multiarch --no-vignettes --timings DAPAR_1.0.0.tar.gz
|
StartedAt: 2015-10-27 01:06:43 -0400 (Tue, 27 Oct 2015)
|
EndedAt: 2015-10-27 01:10:16 -0400 (Tue, 27 Oct 2015)
|
EllapsedTime: 213.4 seconds
|
RetCode: 0
|
Status: OK
|
CheckDir: DAPAR.Rcheck
|
Warnings: 0
|
Command output
##############################################################################
##############################################################################
###
### Running command:
###
### rm -rf DAPAR.buildbin-libdir DAPAR.Rcheck && mkdir DAPAR.buildbin-libdir DAPAR.Rcheck && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=DAPAR.buildbin-libdir DAPAR_1.0.0.tar.gz >DAPAR.Rcheck\00install.out 2>&1 && cp DAPAR.Rcheck\00install.out DAPAR-install.out && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=DAPAR.buildbin-libdir --install="check:DAPAR-install.out" --force-multiarch --no-vignettes --timings DAPAR_1.0.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'C:/biocbld/bbs-3.2-bioc/meat/DAPAR.Rcheck'
* using R version 3.2.2 Patched (2015-08-16 r69094)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'DAPAR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'DAPAR' version '1.0.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'DAPAR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
boxPlotD: no visible global function definition for 'exprs'
boxPlotD: no visible global function definition for 'pData'
corrMatrixD: no visible global function definition for 'pData'
corrMatrixD: no visible global function definition for 'exprs'
createMSnset: no visible global function definition for 'exprs<-'
createMSnset: no visible global function definition for 'exprs'
densityPlotD: no visible global function definition for 'pData'
densityPlotD: no visible global function definition for 'exprs'
diffAna: no visible global function definition for 'exprs'
diffAnaLimma: no visible global function definition for 'exprs'
diffAnaLimma: no visible global function definition for 'pData'
diffAnaWelch: no visible global function definition for 'exprs'
getIndicesConditions: no visible global function definition for 'pData'
getNumberOfEmptyLines: no visible global function definition for
'exprs'
getPaletteForLabels: no visible global function definition for 'pData'
getPourcentageOfMV: no visible global function definition for 'exprs'
heatmapD: no visible global function definition for 'exprs'
mvFilter: no visible global function definition for 'pData'
mvFilter: no visible global function definition for 'exprs'
mvHisto: no visible global function definition for 'pData'
mvHisto: no visible global function definition for 'exprs'
mvImage: no visible global function definition for 'pData'
mvImage: no visible global function definition for 'exprs'
mvImage: no visible global function definition for 'exprs<-'
mvImputation: no visible global function definition for 'exprs'
mvImputation: no visible global function definition for 'exprs<-'
mvPerLinesHisto: no visible global function definition for 'exprs'
mvPerLinesHisto: no visible global function definition for 'pData'
mvTypePlot: no visible global function definition for 'exprs'
mvTypePlot: no visible global function definition for 'pData'
normalizeD: no visible global function definition for 'exprs'
normalizeD: no visible global function definition for 'exprs<-'
normalizeD: no visible global function definition for 'pData'
varianceDistD: no visible global function definition for 'pData'
varianceDistD: no visible global function definition for 'exprs'
writeMSnsetToExcel: no visible global function definition for 'exprs'
writeMSnsetToExcel: no visible global function definition for 'pData'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [15s] OK
** running examples for arch 'x64' ... [15s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'testthat.R' [5s]
[6s] OK
** running tests for arch 'x64' ...
Running 'testthat.R' [7s]
[7s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'C:/biocbld/bbs-3.2-bioc/meat/DAPAR.Rcheck/00check.log'
for details.
DAPAR.Rcheck/00install.out:
install for i386
* installing *source* package 'DAPAR' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'DAPAR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DAPAR' as DAPAR_1.0.0.zip
* DONE (DAPAR)
DAPAR.Rcheck/examples_i386/DAPAR-Ex.timings:
name | user | system | elapsed
|
boxPlotD | 0.15 | 0.00 | 0.14 |
|
corrMatrixD | 0.31 | 0.00 | 0.32 |
|
createMSnset | 0.12 | 0.00 | 0.12 |
|
densityPlotD | 0.16 | 0.01 | 0.17 |
|
diffAna | 0.48 | 0.07 | 0.55 |
|
diffAnaComputeFDR | 0.24 | 0.04 | 0.28 |
|
diffAnaGetSignificant | 0.12 | 0.00 | 0.13 |
|
diffAnaLimma | 0.11 | 0.00 | 0.11 |
|
diffAnaSave | 0.11 | 0.02 | 0.12 |
|
diffAnaVolcanoplot | 0.13 | 0.00 | 0.13 |
|
diffAnaWelch | 0.12 | 0.00 | 0.12 |
|
getIndicesConditions | 0.11 | 0.00 | 0.11 |
|
getNumberOfEmptyLines | 0.13 | 0.01 | 0.14 |
|
getPaletteForLabels | 0.17 | 0.00 | 0.17 |
|
getPourcentageOfMV | 0.19 | 0.00 | 0.19 |
|
heatmapD | 0.06 | 0.00 | 0.06 |
|
mvFilter | 0.42 | 0.00 | 0.43 |
|
mvHisto | 0.11 | 0.00 | 0.10 |
|
mvImage | 2.39 | 0.02 | 2.41 |
|
mvImputation | 0.14 | 0.00 | 0.14 |
|
mvPerLinesHisto | 0.13 | 0.00 | 0.13 |
|
mvPieChart | 0.13 | 0.00 | 0.13 |
|
mvTypePlot | 0.29 | 0.00 | 0.29 |
|
normalizeD | 0.13 | 0.00 | 0.13 |
|
varianceDistD | 0.36 | 0.00 | 0.36 |
|
writeMSnsetToExcel | 1.32 | 0.11 | 2.25 |
|
DAPAR.Rcheck/examples_x64/DAPAR-Ex.timings:
name | user | system | elapsed
|
boxPlotD | 0.11 | 0.00 | 0.11 |
|
corrMatrixD | 0.26 | 0.02 | 0.28 |
|
createMSnset | 0.13 | 0.02 | 0.14 |
|
densityPlotD | 0.14 | 0.00 | 0.14 |
|
diffAna | 0.45 | 0.03 | 0.48 |
|
diffAnaComputeFDR | 0.17 | 0.00 | 0.18 |
|
diffAnaGetSignificant | 0.09 | 0.00 | 0.09 |
|
diffAnaLimma | 0.11 | 0.01 | 0.13 |
|
diffAnaSave | 0.09 | 0.00 | 0.09 |
|
diffAnaVolcanoplot | 0.11 | 0.00 | 0.11 |
|
diffAnaWelch | 0.10 | 0.00 | 0.09 |
|
getIndicesConditions | 0.09 | 0.02 | 0.11 |
|
getNumberOfEmptyLines | 0.09 | 0.00 | 0.10 |
|
getPaletteForLabels | 0.09 | 0.00 | 0.09 |
|
getPourcentageOfMV | 0.11 | 0.00 | 0.11 |
|
heatmapD | 0.03 | 0.00 | 0.04 |
|
mvFilter | 0.18 | 0.00 | 0.17 |
|
mvHisto | 0.10 | 0.00 | 0.11 |
|
mvImage | 3.04 | 0.00 | 3.03 |
|
mvImputation | 0.09 | 0.02 | 0.11 |
|
mvPerLinesHisto | 0.11 | 0.00 | 0.11 |
|
mvPieChart | 0.13 | 0.00 | 0.12 |
|
mvTypePlot | 0.23 | 0.03 | 0.27 |
|
normalizeD | 0.16 | 0.00 | 0.15 |
|
varianceDistD | 0.34 | 0.03 | 0.38 |
|
writeMSnsetToExcel | 2.80 | 0.24 | 0.98 |
|