BioC 3.2: CHECK report for Clomial on windows1.bioconductor.org
This page was generated on 2015-10-27 17:31:04 -0400 (Tue, 27 Oct 2015).
Clomial 1.6.0
Habil Zare
| Snapshot Date: 2015-10-26 19:24:07 -0400 (Mon, 26 Oct 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/Clomial | | Last Changed Rev: 109589 / Revision: 109947 | | Last Changed Date: 2015-10-13 15:36:05 -0400 (Tue, 13 Oct 2015) |
| linux1.bioconductor.org | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | OK | |  |
| windows1.bioconductor.org | Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | [ OK ] | OK | |
| perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | OK | OK | OK | |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | OK | OK | |
Summary
| Package: Clomial
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| Version: 1.6.0
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| Command: rm -rf Clomial.buildbin-libdir Clomial.Rcheck && mkdir Clomial.buildbin-libdir Clomial.Rcheck && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=Clomial.buildbin-libdir Clomial_1.6.0.tar.gz >Clomial.Rcheck\00install.out 2>&1 && cp Clomial.Rcheck\00install.out Clomial-install.out && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=Clomial.buildbin-libdir --install="check:Clomial-install.out" --force-multiarch --no-vignettes --timings Clomial_1.6.0.tar.gz
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| StartedAt: 2015-10-27 00:37:36 -0400 (Tue, 27 Oct 2015)
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| EndedAt: 2015-10-27 00:39:54 -0400 (Tue, 27 Oct 2015)
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| EllapsedTime: 138.7 seconds
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| RetCode: 0
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| Status: OK
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| CheckDir: Clomial.Rcheck
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| Warnings: 0
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Command output
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### Running command:
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### rm -rf Clomial.buildbin-libdir Clomial.Rcheck && mkdir Clomial.buildbin-libdir Clomial.Rcheck && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=Clomial.buildbin-libdir Clomial_1.6.0.tar.gz >Clomial.Rcheck\00install.out 2>&1 && cp Clomial.Rcheck\00install.out Clomial-install.out && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=Clomial.buildbin-libdir --install="check:Clomial-install.out" --force-multiarch --no-vignettes --timings Clomial_1.6.0.tar.gz
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* using log directory 'C:/biocbld/bbs-3.2-bioc/meat/Clomial.Rcheck'
* using R version 3.2.2 Patched (2015-08-16 r69094)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'Clomial/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'Clomial' version '1.6.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'Clomial' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [52s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
choose.best 22.37 0 22.37
Clomial-package 6.74 0 6.73
Clomial 6.70 0 6.70
** running examples for arch 'x64' ... [62s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
choose.best 24.22 0.03 24.25
Clomial-package 9.07 0.00 9.07
Clomial 8.31 0.00 8.31
compute.bic 7.09 0.00 7.10
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
Clomial.Rcheck/00install.out:
install for i386
* installing *source* package 'Clomial' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'Clomial' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Clomial' as Clomial_1.6.0.zip
* DONE (Clomial)
Clomial.Rcheck/examples_i386/Clomial-Ex.timings:
| name | user | system | elapsed
|
| Clomial-package | 6.74 | 0.00 | 6.73 |
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| Clomial | 6.7 | 0.0 | 6.7 |
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| Clomial.generate.data | 0.39 | 0.00 | 0.39 |
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| Clomial.iterate | 4.27 | 0.00 | 4.27 |
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| Clomial.likelihood | 4.58 | 0.00 | 4.58 |
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| Clomial1000 | 0.31 | 0.00 | 0.31 |
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| breastCancer | 0.00 | 0.02 | 0.02 |
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| choose.best | 22.37 | 0.00 | 22.37 |
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| compute.bic | 4.38 | 0.00 | 4.38 |
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| compute.errors | 2.09 | 0.01 | 2.11 |
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Clomial.Rcheck/examples_x64/Clomial-Ex.timings:
| name | user | system | elapsed
|
| Clomial-package | 9.07 | 0.00 | 9.07 |
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| Clomial | 8.31 | 0.00 | 8.31 |
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| Clomial.generate.data | 0.46 | 0.00 | 0.46 |
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| Clomial.iterate | 4.37 | 0.04 | 4.42 |
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| Clomial.likelihood | 4.72 | 0.02 | 4.73 |
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| Clomial1000 | 0.25 | 0.00 | 0.25 |
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| breastCancer | 0 | 0 | 0 |
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| choose.best | 24.22 | 0.03 | 24.25 |
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| compute.bic | 7.09 | 0.00 | 7.10 |
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| compute.errors | 3.56 | 0.00 | 3.56 |
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